Wall clock time and date at job start Mon Mar 30 2020 03:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47231 * 2 1 4 4 C 1.50696 * 109.47154 * 240.00347 * 2 1 3 5 5 H 1.08004 * 119.99910 * 245.62805 * 4 2 1 6 6 C 1.37873 * 120.00460 * 65.62816 * 4 2 1 7 7 N 1.31516 * 120.00242 * 197.51474 * 6 4 2 8 8 Si 1.86800 * 119.99823 * 17.50622 * 6 4 2 9 9 H 1.48498 * 109.47073 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47564 * 300.00637 * 8 6 4 11 11 H 1.48503 * 109.46766 * 60.00289 * 8 6 4 12 12 N 1.46498 * 109.47021 * 119.99957 * 2 1 3 13 13 C 1.34773 * 120.00367 * 274.99968 * 12 2 1 14 14 O 1.21613 * 119.99582 * 0.02562 * 13 12 2 15 15 C 1.47101 * 120.00448 * 180.02562 * 13 12 2 16 16 C 1.32610 * 124.62434 * 180.02562 * 15 13 12 17 17 C 1.51107 * 110.76085 * 179.97438 * 16 15 13 18 18 C 1.54576 * 104.84085 * 343.40225 * 17 16 15 19 19 H 1.09008 * 110.98402 * 266.89108 * 18 17 16 20 20 N 1.46902 * 110.98587 * 143.12466 * 18 17 16 21 21 C 1.51114 * 124.61859 * 359.72368 * 15 13 12 22 22 H 1.09001 * 109.46632 * 66.34359 * 1 2 3 23 23 H 1.09003 * 109.46856 * 186.34231 * 1 2 3 24 24 H 1.08998 * 109.47315 * 306.34297 * 1 2 3 25 25 H 0.97000 * 119.99642 * 354.87764 * 7 6 4 26 26 H 0.97005 * 119.99732 * 95.00666 * 12 2 1 27 27 H 1.08003 * 124.61813 * 0.02562 * 16 15 13 28 28 H 1.09001 * 110.36759 * 102.24171 * 17 16 15 29 29 H 1.09005 * 110.37036 * 224.56515 * 17 16 15 30 30 H 1.00903 * 110.99205 * 61.45909 * 20 18 17 31 31 H 1.00900 * 111.00221 * 185.40209 * 20 18 17 32 32 H 1.09004 * 110.36393 * 315.43980 * 21 15 13 33 33 H 1.09004 * 110.36584 * 77.75611 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1755 -2.4794 7 7 1.9162 -0.9294 -3.5505 8 14 1.3111 1.6199 -2.6502 9 1 1.1181 1.9460 -4.0860 10 1 0.0453 1.8621 -1.9125 11 1 2.3839 2.4791 -2.0878 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8574 1.1615 2.4118 15 6 2.6379 -0.7116 3.5581 16 6 2.7990 -0.1413 4.7444 17 6 3.3179 -1.1399 5.7528 18 6 3.0534 -2.5221 5.1133 19 1 2.0939 -2.9252 5.4377 20 7 4.1438 -3.4590 5.4157 21 6 3.0212 -2.1724 3.6097 22 1 -0.3633 0.4124 -0.9413 23 1 -0.3633 -1.0214 0.1135 24 1 -0.3634 0.6090 0.8277 25 1 2.2403 -1.8401 -3.4691 26 1 2.2491 -1.6318 1.1525 27 1 2.5873 0.8955 4.9606 28 1 4.3860 -0.9952 5.9150 29 1 2.7745 -1.0468 6.6932 30 1 4.2257 -3.6095 6.4100 31 1 4.0159 -4.3325 4.9272 32 1 2.2760 -2.7785 3.0944 33 1 4.0057 -2.3222 3.1664 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695672762.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:52 Heat of formation + Delta-G solvation = -55.902626 kcal Electronic energy + Delta-G solvation = -15261.348243 eV Core-core repulsion = 12706.551963 eV Total energy + Delta-G solvation = -2554.796280 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.02975 -39.14624 -36.84666 -34.50667 -33.87855 -31.74305 -29.22597 -28.02996 -26.90663 -23.90298 -21.85799 -21.08134 -20.49798 -19.26081 -18.10080 -17.18365 -16.94613 -16.14564 -15.95119 -15.67437 -15.17061 -14.72130 -14.29148 -13.93644 -13.65905 -13.60364 -13.43316 -13.22511 -13.08200 -12.62996 -12.44604 -12.00265 -11.86752 -11.68818 -11.19893 -10.92092 -10.49490 -10.13825 -9.84809 -9.60805 -8.83508 -6.47542 0.39866 1.43968 1.49459 1.69341 2.31987 2.39292 2.48233 2.98339 3.41895 3.48691 3.69330 4.04526 4.17546 4.41068 4.51245 4.68802 4.73180 4.74750 4.76428 4.82490 4.90845 5.04351 5.09425 5.32863 5.41693 5.49155 5.59407 5.64902 5.97363 6.26289 6.48808 6.63975 6.79431 7.24121 7.36811 8.56477 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045119 B = 0.006462 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.438719 B = 4332.082286 C = 4722.667782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.241 3.759 3 H 0.022 0.978 4 C -0.615 4.615 5 H 0.040 0.960 6 C -0.004 4.004 7 N -0.924 5.924 8 Si 1.074 2.926 9 H -0.279 1.279 10 H -0.247 1.247 11 H -0.275 1.275 12 N -0.697 5.697 13 C 0.547 3.453 14 O -0.599 6.599 15 C -0.209 4.209 16 C -0.065 4.065 17 C -0.091 4.091 18 C 0.092 3.908 19 H 0.062 0.938 20 N -0.846 5.846 21 C -0.082 4.082 22 H 0.058 0.942 23 H 0.052 0.948 24 H 0.038 0.962 25 H 0.258 0.742 26 H 0.403 0.597 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.355 0.645 31 H 0.351 0.649 32 H 0.073 0.927 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 -4.274 19.302 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.136 3.864 3 H 0.040 0.960 4 C -0.653 4.653 5 H 0.058 0.942 6 C -0.205 4.205 7 N -0.559 5.559 8 Si 0.896 3.104 9 H -0.204 1.204 10 H -0.171 1.171 11 H -0.201 1.201 12 N -0.344 5.344 13 C 0.337 3.663 14 O -0.483 6.483 15 C -0.213 4.213 16 C -0.085 4.085 17 C -0.128 4.128 18 C -0.019 4.019 19 H 0.080 0.920 20 N -0.379 5.379 21 C -0.119 4.119 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.238 0.762 27 H 0.153 0.847 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.091 0.909 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.100 -1.819 17.856 17.982 hybrid contribution -0.011 -2.330 0.821 2.470 sum 1.089 -4.149 18.677 19.163 Atomic orbital electron populations 1.22365 0.97365 1.00820 1.00477 1.18782 0.91678 0.93065 0.82855 0.96039 1.22224 1.40904 1.09693 0.92495 0.94223 1.26846 0.94056 1.07933 0.91653 1.70985 1.43040 1.09673 1.32219 0.83674 0.78752 0.71276 0.76713 1.20411 1.17134 1.20108 1.46059 1.64819 1.14139 1.09381 1.18680 0.77370 0.86178 0.84094 1.90690 1.54036 1.17520 1.86084 1.21799 1.07328 0.98492 0.93634 1.24245 0.90707 1.00029 0.93552 1.21526 1.02809 0.90963 0.97531 1.22020 0.93403 0.93233 0.93277 0.92048 1.58646 1.46641 1.17361 1.15205 1.21222 1.01940 0.90682 0.98106 0.92295 0.92896 0.94329 0.93254 0.76250 0.84718 0.88042 0.87876 0.83015 0.83494 0.90887 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.95 9.16 71.98 0.66 -6.29 16 2 C 0.24 12.02 2.14 44.25 0.09 12.12 16 3 H 0.02 1.17 6.23 -2.39 -0.01 1.16 16 4 C -0.62 -34.45 9.00 25.60 0.23 -34.22 16 5 H 0.04 2.34 7.96 -2.91 -0.02 2.32 16 6 C 0.00 -0.23 5.29 84.65 0.45 0.22 16 7 N -0.92 -56.37 13.70 21.45 0.29 -56.07 16 8 Si 1.07 51.15 26.29 68.60 1.80 52.95 16 9 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.25 -10.73 5.76 99.48 0.57 -10.15 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 N -0.70 -29.90 5.06 -449.72 -2.28 -32.18 16 13 C 0.55 22.53 7.76 86.57 0.67 23.20 16 14 O -0.60 -28.90 16.43 -4.07 -0.07 -28.97 16 15 C -0.21 -6.38 6.10 -18.57 -0.11 -6.49 16 16 C -0.07 -1.63 10.43 24.66 0.26 -1.37 16 17 C -0.09 -1.53 6.53 30.51 0.20 -1.33 16 18 C 0.09 1.56 4.26 45.93 0.20 1.76 16 19 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 20 N -0.85 -11.60 9.28 -164.46 -1.53 -13.12 16 21 C -0.08 -1.94 5.75 30.46 0.18 -1.77 16 22 H 0.06 2.71 4.88 -2.39 -0.01 2.70 16 23 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.26 15.76 8.73 -92.71 -0.81 14.95 16 26 H 0.40 15.55 7.54 -92.70 -0.70 14.85 16 27 H 0.14 3.43 8.03 -2.91 -0.02 3.40 16 28 H 0.10 1.66 8.08 -2.39 -0.02 1.64 16 29 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.36 3.29 9.07 -89.69 -0.81 2.48 16 31 H 0.35 4.15 9.07 -89.69 -0.81 3.33 16 32 H 0.07 1.68 7.84 -2.39 -0.02 1.66 16 33 H 0.08 2.06 8.07 -2.38 -0.02 2.04 16 Total: -1.00 -69.26 275.23 -0.31 -69.57 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -1.36 Total: 21.98 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 2.82 Total: -14.17 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -3.51 Total: -101.37 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.07 Total: -28.97 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 1.80 Total: 52.95 kcal Total: -69.26 -0.31 -69.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695672762.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.666 kcal (2) G-P(sol) polarization free energy of solvation -69.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds