Wall clock time and date at job start Mon Mar 30 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 N 1.46507 * 109.47144 * 240.00130 * 2 1 3 13 13 C 1.34773 * 120.00337 * 85.00358 * 12 2 1 14 14 O 1.21621 * 119.99716 * 359.97438 * 13 12 2 15 15 C 1.47096 * 120.00280 * 180.02562 * 13 12 2 16 16 C 1.32613 * 124.62260 * 180.02562 * 15 13 12 17 17 C 1.51115 * 110.75858 * 180.02562 * 16 15 13 18 18 C 1.54576 * 104.83859 * 343.40681 * 17 16 15 19 19 H 1.09006 * 110.98429 * 266.88662 * 18 17 16 20 20 N 1.46895 * 110.98300 * 143.12974 * 18 17 16 21 21 C 1.51115 * 124.61597 * 359.72278 * 15 13 12 22 22 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 23 23 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 24 24 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 26 26 H 0.96999 * 119.99253 * 265.00221 * 12 2 1 27 27 H 1.08001 * 124.61693 * 0.02956 * 16 15 13 28 28 H 1.08995 * 110.36427 * 102.24674 * 17 16 15 29 29 H 1.09001 * 110.35934 * 224.56500 * 17 16 15 30 30 H 1.00910 * 111.00108 * 61.45075 * 20 18 17 31 31 H 1.00902 * 111.00188 * 185.40494 * 20 18 17 32 32 H 1.08993 * 110.36456 * 315.43546 * 21 15 13 33 33 H 1.08999 * 110.36726 * 77.76121 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.1356 -2.2945 3.6038 10 1 3.1433 -0.1956 4.8187 11 1 1.1572 -1.5869 4.8138 12 7 2.0184 -0.6906 -1.1962 13 6 2.1472 -0.0183 -2.3572 14 8 1.8575 1.1617 -2.4119 15 6 2.6370 -0.7118 -3.5584 16 6 2.7989 -0.1413 -4.7445 17 6 3.3164 -1.1403 -5.7533 18 6 3.8516 -2.3173 -4.9061 19 1 4.9166 -2.2008 -4.7050 20 7 3.5806 -3.6035 -5.5619 21 6 3.0303 -2.1701 -3.6073 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7136 1.1647 3.4844 26 1 2.2490 -1.6318 -1.1526 27 1 2.5896 0.8961 -4.9600 28 1 2.5082 -1.4770 -6.4025 29 1 4.1206 -0.7013 -6.3437 30 1 4.0416 -3.6568 -6.4580 31 1 3.8501 -4.3750 -4.9702 32 1 3.6385 -2.4281 -2.7404 33 1 2.1427 -2.8012 -3.6504 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695672764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:54 Heat of formation + Delta-G solvation = -31.167355 kcal Electronic energy + Delta-G solvation = -15204.249499 eV Core-core repulsion = 12650.525821 eV Total energy + Delta-G solvation = -2553.723679 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.49284 -37.74910 -34.76271 -32.95403 -32.32537 -29.42336 -27.85809 -26.93566 -25.23151 -22.28968 -20.53642 -19.72540 -18.57073 -17.15258 -16.14021 -15.85188 -15.36500 -15.19471 -14.46607 -13.98445 -13.49739 -12.74082 -12.63444 -12.44758 -12.27729 -12.11268 -11.65810 -11.41875 -11.08420 -10.99254 -10.94782 -10.70322 -10.28555 -10.22291 -9.11993 -9.03011 -8.96167 -8.70916 -8.53366 -7.85140 -6.10729 -4.19744 1.76441 3.24591 3.32145 3.34986 4.00410 4.14671 4.25903 4.38526 4.50025 4.75741 5.07366 5.21572 5.29287 5.60816 5.62138 5.76995 5.78198 5.95319 5.98448 6.52542 6.73708 6.86870 6.94757 7.00767 7.18357 7.20110 7.49485 7.60392 7.73005 7.94749 8.17112 8.71341 8.80981 9.17152 9.47903 10.95485 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039916 B = 0.006218 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.311231 B = 4502.137059 C = 4983.412911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.701 5.701 13 C 0.549 3.451 14 O -0.557 6.557 15 C -0.173 4.173 16 C -0.097 4.097 17 C -0.096 4.096 18 C 0.083 3.917 19 H 0.049 0.951 20 N -0.841 5.841 21 C -0.086 4.086 22 H 0.090 0.910 23 H 0.015 0.985 24 H 0.026 0.974 25 H 0.264 0.736 26 H 0.389 0.611 27 H 0.137 0.863 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.341 0.659 31 H 0.344 0.656 32 H 0.073 0.927 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -7.806 -13.183 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.348 5.348 13 C 0.335 3.665 14 O -0.438 6.438 15 C -0.176 4.176 16 C -0.117 4.117 17 C -0.133 4.133 18 C -0.029 4.029 19 H 0.067 0.933 20 N -0.372 5.372 21 C -0.124 4.124 22 H 0.108 0.892 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.221 0.779 27 H 0.155 0.845 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.154 0.846 31 H 0.157 0.843 32 H 0.092 0.908 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.427 -6.626 -12.998 15.246 hybrid contribution 1.404 -1.031 0.994 2.005 sum 5.831 -7.658 -12.004 15.386 Atomic orbital electron populations 1.22070 0.98406 0.99135 1.00905 1.18774 0.91101 0.94059 0.80040 0.93302 1.21252 1.32487 1.13014 0.90323 0.92061 1.24897 0.94820 0.94979 0.99061 1.69921 1.36088 1.22335 1.23744 0.86387 0.78575 0.79520 0.82571 1.19771 1.20879 1.20861 1.46454 1.64409 1.13484 1.10445 1.17937 0.78739 0.86587 0.83262 1.90741 1.51973 1.15776 1.85310 1.22049 1.04226 0.96080 0.95258 1.23822 0.95300 0.99248 0.93313 1.21446 1.00874 0.93570 0.97457 1.22126 0.97024 0.89528 0.94186 0.93293 1.58714 1.67080 1.03565 1.07796 1.21238 1.00474 0.93702 0.96972 0.89157 0.96609 0.95450 0.92640 0.77875 0.84493 0.89014 0.90932 0.84645 0.84345 0.90823 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.26 37.16 0.34 -3.42 16 2 C 0.26 6.90 2.56 -69.08 -0.18 6.72 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -14.37 8.73 -34.44 -0.30 -14.68 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.23 11.33 55.43 0.63 -24.60 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.70 -15.40 5.06 -56.12 -0.28 -15.68 16 13 C 0.55 11.81 7.76 -12.67 -0.10 11.71 16 14 O -0.56 -14.17 16.43 5.26 0.09 -14.08 16 15 C -0.17 -2.83 6.10 -102.73 -0.63 -3.46 16 16 C -0.10 -1.38 10.43 -36.01 -0.38 -1.75 16 17 C -0.10 -1.03 6.53 -26.85 -0.18 -1.20 16 18 C 0.08 0.86 4.25 -66.17 -0.28 0.58 16 19 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 20 N -0.84 -7.20 9.28 -3.35 -0.03 -7.23 16 21 C -0.09 -1.12 5.75 -26.96 -0.16 -1.27 16 22 H 0.09 2.49 6.08 -51.93 -0.32 2.18 16 23 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.39 7.45 7.55 -40.82 -0.31 7.14 16 27 H 0.14 1.98 8.03 -52.49 -0.42 1.56 16 28 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.34 2.26 9.07 -39.29 -0.36 1.90 16 31 H 0.34 2.52 9.07 -39.29 -0.36 2.16 16 32 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 33 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 LS Contribution 279.62 15.07 4.21 4.21 Total: -1.00 -31.40 279.62 -6.98 -38.38 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.63 Total: 8.29 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.94 Total: -5.09 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.31 Total: -47.51 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.08 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.40 -6.98 -38.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695672764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.209 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds