Wall clock time and date at job start Mon Mar 30 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 N 1.46507 * 109.47144 * 240.00130 * 2 1 3 13 13 C 1.34773 * 120.00337 * 85.00358 * 12 2 1 14 14 O 1.21621 * 119.99716 * 359.97438 * 13 12 2 15 15 C 1.47096 * 120.00280 * 180.02562 * 13 12 2 16 16 C 1.32613 * 124.62260 * 180.02562 * 15 13 12 17 17 C 1.51115 * 110.75858 * 180.02562 * 16 15 13 18 18 C 1.54576 * 104.83859 * 343.40681 * 17 16 15 19 19 H 1.09006 * 110.98429 * 266.88662 * 18 17 16 20 20 N 1.46895 * 110.98300 * 143.12974 * 18 17 16 21 21 C 1.51115 * 124.61597 * 359.72278 * 15 13 12 22 22 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 23 23 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 24 24 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 26 26 H 0.96999 * 119.99253 * 265.00221 * 12 2 1 27 27 H 1.08001 * 124.61693 * 0.02956 * 16 15 13 28 28 H 1.08995 * 110.36427 * 102.24674 * 17 16 15 29 29 H 1.09001 * 110.35934 * 224.56500 * 17 16 15 30 30 H 1.00910 * 111.00108 * 61.45075 * 20 18 17 31 31 H 1.00902 * 111.00188 * 185.40494 * 20 18 17 32 32 H 1.08993 * 110.36456 * 315.43546 * 21 15 13 33 33 H 1.08999 * 110.36726 * 77.76121 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.1356 -2.2945 3.6038 10 1 3.1433 -0.1956 4.8187 11 1 1.1572 -1.5869 4.8138 12 7 2.0184 -0.6906 -1.1962 13 6 2.1472 -0.0183 -2.3572 14 8 1.8575 1.1617 -2.4119 15 6 2.6370 -0.7118 -3.5584 16 6 2.7989 -0.1413 -4.7445 17 6 3.3164 -1.1403 -5.7533 18 6 3.8516 -2.3173 -4.9061 19 1 4.9166 -2.2008 -4.7050 20 7 3.5806 -3.6035 -5.5619 21 6 3.0303 -2.1701 -3.6073 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7136 1.1647 3.4844 26 1 2.2490 -1.6318 -1.1526 27 1 2.5896 0.8961 -4.9600 28 1 2.5082 -1.4770 -6.4025 29 1 4.1206 -0.7013 -6.3437 30 1 4.0416 -3.6568 -6.4580 31 1 3.8501 -4.3750 -4.9702 32 1 3.6385 -2.4281 -2.7404 33 1 2.1427 -2.8012 -3.6504 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695672764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:54 Heat of formation + Delta-G solvation = -55.001609 kcal Electronic energy + Delta-G solvation = -15205.283030 eV Core-core repulsion = 12650.525821 eV Total energy + Delta-G solvation = -2554.757209 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.94957 -39.07815 -36.73979 -34.37148 -33.81134 -31.20391 -29.10295 -27.96869 -27.36398 -23.98853 -21.94593 -21.05854 -20.20080 -18.60446 -17.67898 -17.25887 -16.87183 -16.26776 -16.05247 -15.72227 -15.15465 -14.46086 -13.97406 -13.69556 -13.60046 -13.34189 -13.14393 -12.94677 -12.87019 -12.74538 -12.58878 -12.31305 -12.13284 -11.83322 -11.12866 -10.84798 -10.61656 -10.05546 -9.72373 -9.56303 -8.19301 -6.37293 0.44724 1.44275 1.44528 1.57348 2.34501 2.40028 2.65004 3.11198 3.46475 3.53308 3.74049 4.10323 4.21551 4.51033 4.70256 4.80046 4.81010 4.86462 4.88938 4.94958 5.05790 5.12963 5.34657 5.43084 5.53682 5.58273 5.66523 5.89262 6.06402 6.29812 6.68023 6.69948 6.93527 7.29571 7.50237 8.87746 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039916 B = 0.006218 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.311231 B = 4502.137059 C = 4983.412911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.267 3.733 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.976 3.024 9 H -0.259 1.259 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.697 5.697 13 C 0.543 3.457 14 O -0.608 6.608 15 C -0.205 4.205 16 C -0.072 4.072 17 C -0.090 4.090 18 C 0.092 3.908 19 H 0.060 0.940 20 N -0.844 5.844 21 C -0.080 4.080 22 H 0.068 0.932 23 H 0.010 0.990 24 H 0.041 0.959 25 H 0.266 0.734 26 H 0.404 0.596 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.355 0.645 31 H 0.352 0.648 32 H 0.075 0.925 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -10.111 -14.247 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.801 3.199 9 H -0.183 1.183 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.344 5.344 13 C 0.332 3.668 14 O -0.492 6.492 15 C -0.208 4.208 16 C -0.093 4.093 17 C -0.127 4.127 18 C -0.019 4.019 19 H 0.078 0.922 20 N -0.377 5.377 21 C -0.117 4.117 22 H 0.087 0.913 23 H 0.029 0.971 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.239 0.761 27 H 0.147 0.853 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.169 0.831 31 H 0.166 0.834 32 H 0.093 0.907 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.744 -8.983 -14.095 17.674 hybrid contribution 0.985 -0.232 1.226 1.590 sum 6.729 -9.216 -12.869 17.199 Atomic orbital electron populations 1.21894 0.98221 0.99511 0.99546 1.18409 0.91251 0.91977 0.82007 0.98425 1.21546 1.32836 1.13419 0.90699 0.90855 1.25849 0.94784 0.95606 1.02428 1.70069 1.37112 1.23821 1.24645 0.85231 0.78109 0.78477 0.78113 1.18313 1.20860 1.20285 1.46200 1.64523 1.14080 1.09635 1.18753 0.77517 0.86159 0.84362 1.90701 1.54202 1.18125 1.86206 1.21848 1.07200 0.98232 0.93568 1.24230 0.91896 0.99629 0.93514 1.21507 1.01915 0.92629 0.96611 1.21999 0.96966 0.90328 0.92655 0.92249 1.58641 1.67522 1.02935 1.08558 1.21213 1.00855 0.90902 0.98775 0.91281 0.97117 0.93996 0.92467 0.76085 0.85264 0.87940 0.88139 0.83074 0.83401 0.90668 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.26 71.98 0.67 -6.39 16 2 C 0.27 14.55 2.56 44.24 0.11 14.66 16 3 H 0.00 -0.14 7.58 -2.39 -0.02 -0.16 16 4 C -0.55 -29.75 8.73 25.60 0.22 -29.52 16 5 H 0.07 3.72 7.74 -2.92 -0.02 3.70 16 6 C 0.01 0.73 5.30 84.66 0.45 1.17 16 7 N -0.92 -53.62 11.33 21.45 0.24 -53.37 16 8 Si 0.98 42.42 29.54 68.60 2.03 44.44 16 9 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.70 -31.24 5.06 -449.70 -2.28 -33.52 16 13 C 0.54 23.99 7.76 86.57 0.67 24.66 16 14 O -0.61 -32.40 16.43 -4.10 -0.07 -32.47 16 15 C -0.21 -6.59 6.10 -18.57 -0.11 -6.70 16 16 C -0.07 -1.95 10.43 24.66 0.26 -1.70 16 17 C -0.09 -1.60 6.53 30.52 0.20 -1.40 16 18 C 0.09 1.61 4.25 45.92 0.20 1.80 16 19 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 20 N -0.84 -11.35 9.28 -164.53 -1.53 -12.88 16 21 C -0.08 -1.91 5.75 30.45 0.18 -1.73 16 22 H 0.07 3.96 6.08 -2.39 -0.01 3.94 16 23 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 24 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.40 15.42 7.55 -92.71 -0.70 14.72 16 27 H 0.13 3.65 8.03 -2.91 -0.02 3.63 16 28 H 0.10 1.74 8.08 -2.39 -0.02 1.72 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.35 3.28 9.07 -89.69 -0.81 2.46 16 31 H 0.35 3.95 9.07 -89.69 -0.81 3.14 16 32 H 0.07 1.74 7.84 -2.39 -0.02 1.72 16 33 H 0.09 2.11 8.07 -2.39 -0.02 2.09 16 Total: -1.00 -69.89 279.62 0.05 -69.84 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -1.19 Total: 23.10 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 2.84 Total: -5.15 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -3.56 Total: -99.77 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.07 Total: -32.47 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -69.89 0.05 -69.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695672764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.843 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds