Wall clock time and date at job start Mon Mar 30 2020 03:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47261 * 2 1 4 4 C 1.50699 * 109.47078 * 120.00035 * 2 1 3 5 5 H 1.08003 * 119.99963 * 120.00262 * 4 2 1 6 6 C 1.37873 * 119.99865 * 299.99557 * 4 2 1 7 7 N 1.31522 * 119.99749 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 120.00236 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47160 * 89.99730 * 8 6 4 10 10 H 1.48503 * 109.47061 * 209.99752 * 8 6 4 11 11 H 1.48500 * 109.46598 * 329.99398 * 8 6 4 12 12 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 13 13 C 1.34775 * 119.99693 * 84.99802 * 12 2 1 14 14 O 1.21615 * 120.00286 * 0.02562 * 13 12 2 15 15 C 1.47106 * 119.99574 * 180.02562 * 13 12 2 16 16 C 1.32618 * 124.61602 * 180.02562 * 15 13 12 17 17 C 1.51112 * 110.75387 * 180.02562 * 16 15 13 18 18 C 1.54572 * 104.84256 * 16.59774 * 17 16 15 19 19 H 1.09008 * 110.98248 * 93.11280 * 18 17 16 20 20 N 1.46896 * 110.98483 * 216.86984 * 18 17 16 21 21 C 1.51110 * 124.62042 * 359.72959 * 15 13 12 22 22 H 1.09001 * 109.46832 * 59.99981 * 1 2 3 23 23 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00172 * 1 2 3 25 25 H 0.97001 * 119.99269 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00117 * 265.00154 * 12 2 1 27 27 H 1.08001 * 124.62320 * 0.02562 * 16 15 13 28 28 H 1.09003 * 110.36523 * 135.43984 * 17 16 15 29 29 H 1.09006 * 110.36619 * 257.75695 * 17 16 15 30 30 H 1.00900 * 111.00158 * 298.55008 * 20 18 17 31 31 H 1.00905 * 111.00193 * 62.50402 * 20 18 17 32 32 H 1.08999 * 110.36617 * 282.23561 * 21 15 13 33 33 H 1.08999 * 110.36489 * 44.55974 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6248 1.2792 2.6541 9 1 -0.8027 0.8729 2.6998 10 1 0.9760 1.9952 3.9068 11 1 0.8472 2.1766 1.4920 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1618 -2.4117 15 6 2.6369 -0.7119 -3.5583 16 6 2.7987 -0.1413 -4.7445 17 6 3.3162 -1.1404 -5.7532 18 6 3.0498 -2.5224 -5.1143 19 1 2.0897 -2.9239 -5.4389 20 7 4.1387 -3.4607 -5.4171 21 6 3.0302 -2.1701 -3.6073 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.9026 -0.5283 4.4375 26 1 2.2491 -1.6318 -1.1526 27 1 2.5893 0.8961 -4.9601 28 1 2.7730 -1.0461 -6.6935 29 1 4.3846 -0.9971 -5.9154 30 1 4.2206 -3.6109 -6.4114 31 1 5.0120 -3.1393 -5.0268 32 1 4.0180 -2.3115 -3.1685 33 1 2.2920 -2.7798 -3.0864 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695672765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:55 Heat of formation + Delta-G solvation = -23.514761 kcal Electronic energy + Delta-G solvation = -15273.270349 eV Core-core repulsion = 12719.878512 eV Total energy + Delta-G solvation = -2553.391837 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.70337 -37.99608 -35.00329 -32.96108 -32.34950 -30.14323 -28.18284 -26.97729 -25.17502 -22.48022 -20.82896 -19.88264 -18.72096 -17.22715 -16.55371 -16.16269 -15.43092 -14.94827 -14.63164 -13.97969 -13.46887 -13.04130 -12.95998 -12.87687 -12.59990 -12.18112 -11.91630 -11.79224 -11.63777 -11.27905 -11.24709 -10.79902 -10.17502 -9.70992 -9.22187 -9.21081 -8.97266 -8.90019 -8.74285 -8.12220 -6.19710 -4.22173 1.59676 3.24531 3.36346 3.41344 3.80549 3.97641 4.18326 4.32950 4.50967 4.67754 4.95232 5.14523 5.15161 5.28071 5.48482 5.54818 5.73075 5.83572 5.99811 6.31604 6.35921 6.43991 6.57507 6.59351 6.87225 6.88044 7.17881 7.22249 7.30345 7.53023 8.17653 8.54790 8.77267 8.94897 9.41204 10.92480 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047313 B = 0.006404 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.666920 B = 4371.014494 C = 4762.940652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.693 5.693 13 C 0.551 3.449 14 O -0.558 6.558 15 C -0.174 4.174 16 C -0.094 4.094 17 C -0.139 4.139 18 C 0.089 3.911 19 H 0.096 0.904 20 N -0.839 5.839 21 C -0.087 4.087 22 H 0.036 0.964 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.267 0.733 26 H 0.396 0.604 27 H 0.136 0.864 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.342 0.658 31 H 0.343 0.657 32 H 0.085 0.915 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 -2.977 -16.839 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.131 3.869 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.340 5.340 13 C 0.338 3.662 14 O -0.439 6.439 15 C -0.177 4.177 16 C -0.115 4.115 17 C -0.178 4.178 18 C -0.023 4.023 19 H 0.114 0.886 20 N -0.368 5.368 21 C -0.125 4.125 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.230 0.770 27 H 0.153 0.847 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.103 0.897 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.283 -2.718 -16.189 16.466 hybrid contribution -0.071 1.179 -0.194 1.197 sum 1.212 -1.539 -16.384 16.501 Atomic orbital electron populations 1.22446 0.99237 1.00900 0.99312 1.19130 0.90209 0.94717 0.82820 0.93342 1.21040 1.33263 1.14421 0.88524 0.90167 1.24831 0.95493 0.96708 0.95505 1.69876 1.44940 1.40103 0.98029 0.86870 0.80547 0.83619 0.77421 1.20277 1.22142 1.18682 1.46127 1.64380 1.13853 1.09645 1.17958 0.78527 0.86499 0.83263 1.90738 1.52103 1.15743 1.85350 1.22056 1.03899 0.96799 0.94950 1.23796 0.94687 0.99453 0.93515 1.22337 1.01258 0.95454 0.98723 1.22378 0.95825 0.89194 0.94890 0.88635 1.58820 1.08706 1.50374 1.18885 1.21323 1.02730 0.92314 0.96099 0.94534 0.92764 0.93429 0.92295 0.77002 0.84672 0.90544 0.90231 0.84565 0.84405 0.89672 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 8.96 37.16 0.33 -3.35 16 2 C 0.23 5.76 2.15 -69.08 -0.15 5.61 16 3 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 4 C -0.53 -14.68 9.31 -34.44 -0.32 -15.00 16 5 H 0.08 2.31 7.98 -52.48 -0.42 1.89 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 8 Si 0.89 22.03 24.37 -169.99 -4.14 17.89 16 9 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 11 H -0.26 -6.50 6.53 56.52 0.37 -6.14 16 12 N -0.69 -14.36 5.06 -56.11 -0.28 -14.64 16 13 C 0.55 11.02 7.76 -12.66 -0.10 10.92 16 14 O -0.56 -13.18 16.43 5.26 0.09 -13.09 16 15 C -0.17 -2.61 6.09 -102.73 -0.63 -3.24 16 16 C -0.09 -1.22 10.43 -36.01 -0.38 -1.59 16 17 C -0.14 -1.28 6.52 -26.86 -0.18 -1.46 16 18 C 0.09 0.86 4.32 -65.95 -0.28 0.57 16 19 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 20 N -0.84 -6.93 9.36 -3.17 -0.03 -6.96 16 21 C -0.09 -1.05 5.73 -26.75 -0.15 -1.20 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 25 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.40 7.30 7.54 -40.82 -0.31 6.99 16 27 H 0.14 1.79 8.03 -52.49 -0.42 1.37 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.34 2.15 9.07 -39.29 -0.36 1.79 16 31 H 0.34 2.60 8.77 -39.29 -0.34 2.26 16 32 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 33 H 0.08 0.99 7.82 -51.93 -0.41 0.58 16 LS Contribution 272.36 15.07 4.10 4.10 Total: -1.00 -31.96 272.36 -5.91 -37.87 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.47 Total: 7.33 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.95 Total: -6.62 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.46 Total: -47.47 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.96 -5.91 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695672765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.351 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds