Wall clock time and date at job start Mon Mar 30 2020 03:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47261 * 2 1 4 4 C 1.50699 * 109.47078 * 120.00035 * 2 1 3 5 5 H 1.08003 * 119.99963 * 120.00262 * 4 2 1 6 6 C 1.37873 * 119.99865 * 299.99557 * 4 2 1 7 7 N 1.31522 * 119.99749 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 120.00236 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47160 * 89.99730 * 8 6 4 10 10 H 1.48503 * 109.47061 * 209.99752 * 8 6 4 11 11 H 1.48500 * 109.46598 * 329.99398 * 8 6 4 12 12 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 13 13 C 1.34775 * 119.99693 * 84.99802 * 12 2 1 14 14 O 1.21615 * 120.00286 * 0.02562 * 13 12 2 15 15 C 1.47106 * 119.99574 * 180.02562 * 13 12 2 16 16 C 1.32618 * 124.61602 * 180.02562 * 15 13 12 17 17 C 1.51112 * 110.75387 * 180.02562 * 16 15 13 18 18 C 1.54572 * 104.84256 * 16.59774 * 17 16 15 19 19 H 1.09008 * 110.98248 * 93.11280 * 18 17 16 20 20 N 1.46896 * 110.98483 * 216.86984 * 18 17 16 21 21 C 1.51110 * 124.62042 * 359.72959 * 15 13 12 22 22 H 1.09001 * 109.46832 * 59.99981 * 1 2 3 23 23 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00172 * 1 2 3 25 25 H 0.97001 * 119.99269 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00117 * 265.00154 * 12 2 1 27 27 H 1.08001 * 124.62320 * 0.02562 * 16 15 13 28 28 H 1.09003 * 110.36523 * 135.43984 * 17 16 15 29 29 H 1.09006 * 110.36619 * 257.75695 * 17 16 15 30 30 H 1.00900 * 111.00158 * 298.55008 * 20 18 17 31 31 H 1.00905 * 111.00193 * 62.50402 * 20 18 17 32 32 H 1.08999 * 110.36617 * 282.23561 * 21 15 13 33 33 H 1.08999 * 110.36489 * 44.55974 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6248 1.2792 2.6541 9 1 -0.8027 0.8729 2.6998 10 1 0.9760 1.9952 3.9068 11 1 0.8472 2.1766 1.4920 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1618 -2.4117 15 6 2.6369 -0.7119 -3.5583 16 6 2.7987 -0.1413 -4.7445 17 6 3.3162 -1.1404 -5.7532 18 6 3.0498 -2.5224 -5.1143 19 1 2.0897 -2.9239 -5.4389 20 7 4.1387 -3.4607 -5.4171 21 6 3.0302 -2.1701 -3.6073 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.9026 -0.5283 4.4375 26 1 2.2491 -1.6318 -1.1526 27 1 2.5893 0.8961 -4.9601 28 1 2.7730 -1.0461 -6.6935 29 1 4.3846 -0.9971 -5.9154 30 1 4.2206 -3.6109 -6.4114 31 1 5.0120 -3.1393 -5.0268 32 1 4.0180 -2.3115 -3.1685 33 1 2.2920 -2.7798 -3.0864 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695672765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:55 Heat of formation + Delta-G solvation = -49.005313 kcal Electronic energy + Delta-G solvation = -15274.375703 eV Core-core repulsion = 12719.878512 eV Total energy + Delta-G solvation = -2554.497190 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04978 -39.21827 -36.86854 -34.44756 -33.79634 -31.89625 -29.21641 -27.92358 -27.24840 -24.06915 -22.00427 -21.27183 -20.26737 -18.70494 -17.95636 -17.38450 -17.20792 -16.35835 -15.99146 -15.38405 -15.11252 -14.84446 -14.19372 -13.97661 -13.88727 -13.69297 -13.44127 -13.25428 -12.87742 -12.77441 -12.58952 -12.17961 -12.10995 -11.63500 -11.31808 -10.90986 -10.85027 -10.09952 -9.79483 -9.59411 -8.40003 -6.46403 0.39706 1.26077 1.34087 1.43985 2.24715 2.32496 2.46060 2.95964 3.39828 3.54157 3.84916 4.07586 4.20095 4.36756 4.42188 4.50392 4.62271 4.67576 4.73116 4.83465 4.90900 4.96647 5.21353 5.27328 5.38814 5.40300 5.51363 5.59787 6.12049 6.26103 6.54419 6.66490 6.83039 7.16191 7.37898 8.75291 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.047313 B = 0.006404 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.666920 B = 4371.014494 C = 4762.940652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.239 3.761 3 H 0.022 0.978 4 C -0.535 4.535 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.932 5.932 8 Si 0.940 3.060 9 H -0.257 1.257 10 H -0.290 1.290 11 H -0.265 1.265 12 N -0.693 5.693 13 C 0.548 3.452 14 O -0.602 6.602 15 C -0.205 4.205 16 C -0.068 4.068 17 C -0.129 4.129 18 C 0.099 3.901 19 H 0.100 0.900 20 N -0.843 5.843 21 C -0.083 4.083 22 H 0.044 0.956 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.271 0.729 26 H 0.406 0.594 27 H 0.130 0.870 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.355 0.645 31 H 0.347 0.653 32 H 0.084 0.916 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -3.261 -19.051 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.134 3.866 3 H 0.040 0.960 4 C -0.573 4.573 5 H 0.074 0.926 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.767 3.233 9 H -0.183 1.183 10 H -0.217 1.217 11 H -0.190 1.190 12 N -0.341 5.341 13 C 0.338 3.662 14 O -0.486 6.486 15 C -0.209 4.209 16 C -0.088 4.088 17 C -0.168 4.168 18 C -0.013 4.013 19 H 0.118 0.882 20 N -0.374 5.374 21 C -0.121 4.121 22 H 0.063 0.937 23 H 0.085 0.915 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.242 0.758 27 H 0.147 0.853 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.170 0.830 31 H 0.161 0.839 32 H 0.102 0.898 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.030 -3.039 -18.431 18.708 hybrid contribution 0.097 1.256 0.409 1.324 sum 1.127 -1.784 -18.022 18.145 Atomic orbital electron populations 1.22336 0.97646 1.01771 0.99484 1.18813 0.91397 0.93160 0.83211 0.96039 1.21227 1.32557 1.13637 0.89905 0.92571 1.25556 0.96795 0.99369 0.95252 1.69978 1.46562 1.41876 0.98664 0.85991 0.79870 0.80248 0.77211 1.18305 1.21692 1.18955 1.45968 1.64748 1.14289 1.09103 1.18685 0.77343 0.86102 0.84109 1.90701 1.54062 1.17669 1.86119 1.21831 1.07016 0.98572 0.93460 1.24196 0.91143 0.99848 0.93599 1.22398 1.02465 0.93631 0.98329 1.22254 0.96629 0.89671 0.92751 0.88152 1.58774 1.08618 1.49844 1.20128 1.21306 1.02359 0.90154 0.98256 0.93663 0.91538 0.93851 0.91949 0.75802 0.85255 0.88043 0.88303 0.82980 0.83878 0.89801 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.95 8.96 71.98 0.65 -6.31 16 2 C 0.24 11.84 2.15 44.24 0.10 11.93 16 3 H 0.02 1.19 6.63 -2.38 -0.02 1.18 16 4 C -0.54 -29.94 9.31 25.60 0.24 -29.70 16 5 H 0.06 3.34 7.98 -2.91 -0.02 3.31 16 6 C 0.03 1.73 5.45 84.65 0.46 2.19 16 7 N -0.93 -56.41 13.96 21.45 0.30 -56.11 16 8 Si 0.94 45.38 24.37 68.60 1.67 47.05 16 9 H -0.26 -11.62 6.87 99.48 0.68 -10.94 16 10 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 11 H -0.26 -12.82 6.53 99.48 0.65 -12.17 16 12 N -0.69 -29.04 5.06 -449.69 -2.28 -31.32 16 13 C 0.55 22.01 7.76 86.57 0.67 22.69 16 14 O -0.60 -28.74 16.43 -4.08 -0.07 -28.81 16 15 C -0.21 -5.97 6.09 -18.57 -0.11 -6.08 16 16 C -0.07 -1.60 10.43 24.66 0.26 -1.34 16 17 C -0.13 -1.89 6.52 30.51 0.20 -1.69 16 18 C 0.10 1.59 4.32 46.06 0.20 1.79 16 19 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 20 N -0.84 -11.20 9.36 -163.96 -1.54 -12.73 16 21 C -0.08 -1.87 5.73 30.58 0.18 -1.70 16 22 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.04 1.97 3.27 -2.39 -0.01 1.97 16 25 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.41 15.17 7.54 -92.71 -0.70 14.47 16 27 H 0.13 3.21 8.03 -2.91 -0.02 3.19 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.19 8.08 -2.38 -0.02 1.17 16 30 H 0.36 3.16 9.07 -89.69 -0.81 2.35 16 31 H 0.35 4.22 8.77 -89.69 -0.79 3.43 16 32 H 0.08 1.87 7.87 -2.39 -0.02 1.85 16 33 H 0.08 1.77 7.82 -2.39 -0.02 1.75 16 Total: -1.00 -69.37 272.36 -0.31 -69.68 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -1.23 Total: 20.44 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 2.83 Total: -8.20 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -3.51 Total: -100.16 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.07 Total: -28.81 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.05 kcal Total: -69.37 -0.31 -69.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695672765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.676 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds