Wall clock time and date at job start Mon Mar 30 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21609 * 119.99893 * 359.97438 * 13 12 2 15 15 C 1.47108 * 119.99958 * 179.97438 * 13 12 2 16 16 C 1.32613 * 124.61916 * 180.02562 * 15 13 12 17 17 C 1.51108 * 110.76115 * 179.97438 * 16 15 13 18 18 C 1.54578 * 104.83931 * 16.59709 * 17 16 15 19 19 H 1.08997 * 110.98085 * 93.11112 * 18 17 16 20 20 N 1.46894 * 110.98334 * 216.87554 * 18 17 16 21 21 C 1.51107 * 124.62033 * 359.72175 * 15 13 12 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 26 26 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 27 27 H 1.08003 * 124.61782 * 0.02562 * 16 15 13 28 28 H 1.08998 * 110.36816 * 135.43807 * 17 16 15 29 29 H 1.09002 * 110.36551 * 257.75795 * 17 16 15 30 30 H 1.00902 * 110.99982 * 298.54034 * 20 18 17 31 31 H 1.00897 * 111.00345 * 62.50145 * 20 18 17 32 32 H 1.09001 * 110.36372 * 282.24154 * 21 15 13 33 33 H 1.09000 * 110.36864 * 44.56188 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8581 1.1619 2.4117 15 6 2.6368 -0.7118 3.5584 16 6 2.7977 -0.1414 4.7448 17 6 3.3155 -1.1402 5.7535 18 6 3.8523 -2.3165 4.9063 19 1 4.9172 -2.1990 4.7058 20 7 3.5820 -3.6031 5.5616 21 6 3.0190 -2.1728 3.6103 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7089 1.1612 -3.4844 26 1 2.2490 -1.6317 1.1527 27 1 2.5866 0.8955 4.9607 28 1 4.1190 -0.7008 6.3446 29 1 2.5073 -1.4779 6.4023 30 1 4.0426 -3.6563 6.4578 31 1 2.5897 -3.7598 5.6551 32 1 2.1266 -2.7968 3.6595 33 1 3.6213 -2.4385 2.7415 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695672767.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:57 Heat of formation + Delta-G solvation = -31.794685 kcal Electronic energy + Delta-G solvation = -15215.174157 eV Core-core repulsion = 12661.423276 eV Total energy + Delta-G solvation = -2553.750882 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.58005 -37.84546 -34.77960 -32.90439 -32.32425 -29.41824 -27.90214 -26.87414 -25.23444 -22.30213 -20.77554 -19.78412 -18.56182 -17.14212 -16.49172 -15.86861 -15.20643 -14.87699 -14.43614 -13.86040 -13.50344 -13.00076 -12.86189 -12.46231 -12.37961 -11.88175 -11.69526 -11.52924 -11.26369 -11.05811 -10.93994 -10.72071 -10.31193 -10.21433 -9.10090 -9.03611 -8.94382 -8.81650 -8.53005 -7.87039 -6.10274 -4.19658 1.69969 3.27480 3.32396 3.33925 3.96490 4.11476 4.22198 4.38325 4.58708 4.74129 5.00438 5.21580 5.23941 5.33956 5.54350 5.58977 5.81881 5.90129 6.03740 6.48455 6.67412 6.85225 6.89645 6.98769 7.16974 7.19801 7.47744 7.59194 7.72223 7.93826 8.16672 8.69722 8.80156 9.14989 9.47887 10.95748 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.006206 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.820549 B = 4510.905706 C = 4978.497519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.700 5.700 13 C 0.548 3.452 14 O -0.557 6.557 15 C -0.172 4.172 16 C -0.099 4.099 17 C -0.138 4.138 18 C 0.088 3.912 19 H 0.096 0.904 20 N -0.839 5.839 21 C -0.086 4.086 22 H 0.026 0.974 23 H 0.090 0.910 24 H 0.014 0.986 25 H 0.265 0.735 26 H 0.389 0.611 27 H 0.135 0.865 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.341 0.659 31 H 0.342 0.658 32 H 0.083 0.917 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.872 -7.029 13.935 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.347 5.347 13 C 0.334 3.666 14 O -0.438 6.438 15 C -0.176 4.176 16 C -0.119 4.119 17 C -0.177 4.177 18 C -0.023 4.023 19 H 0.114 0.886 20 N -0.368 5.368 21 C -0.124 4.124 22 H 0.045 0.955 23 H 0.109 0.891 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.222 0.778 27 H 0.153 0.847 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.101 0.899 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.940 -6.422 13.130 15.138 hybrid contribution -0.110 -0.232 -0.126 0.286 sum 3.830 -6.653 13.003 15.100 Atomic orbital electron populations 1.22075 0.98412 0.99125 1.00901 1.18766 0.91083 0.94042 0.80015 0.93322 1.21181 1.32501 1.13239 0.90323 0.92102 1.24888 0.94795 0.94955 0.99046 1.69893 1.35814 1.22461 1.23975 0.86497 0.79172 0.79591 0.81767 1.20143 1.21124 1.20166 1.46467 1.64283 1.13541 1.10414 1.17931 0.78800 0.86596 0.83288 1.90740 1.51992 1.15755 1.85306 1.22144 1.03898 0.96296 0.95223 1.23776 0.95470 0.99295 0.93341 1.22318 1.00629 0.96593 0.98131 1.22377 1.00071 0.86467 0.93434 0.88629 1.58824 1.16686 1.32828 1.28448 1.21307 0.99989 0.92906 0.98197 0.95454 0.89100 0.96678 0.92522 0.77791 0.84690 0.90597 0.90365 0.84586 0.84506 0.89919 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 2 C 0.26 6.89 2.56 -69.09 -0.18 6.71 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.20 11.32 55.43 0.63 -24.58 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.70 -15.26 5.06 -56.12 -0.28 -15.54 16 13 C 0.55 11.63 7.76 -12.66 -0.10 11.54 16 14 O -0.56 -14.04 16.43 5.27 0.09 -13.96 16 15 C -0.17 -2.74 6.09 -102.73 -0.63 -3.36 16 16 C -0.10 -1.35 10.43 -36.01 -0.38 -1.73 16 17 C -0.14 -1.35 6.52 -26.85 -0.18 -1.52 16 18 C 0.09 0.90 4.32 -65.97 -0.28 0.61 16 19 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 20 N -0.84 -7.12 9.36 -3.19 -0.03 -7.15 16 21 C -0.09 -1.09 5.74 -26.76 -0.15 -1.24 16 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.39 7.41 7.54 -40.82 -0.31 7.11 16 27 H 0.14 1.92 8.03 -52.48 -0.42 1.50 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.34 2.23 9.07 -39.29 -0.36 1.88 16 31 H 0.34 2.63 8.76 -39.29 -0.34 2.28 16 32 H 0.08 0.99 7.86 -51.93 -0.41 0.58 16 33 H 0.08 1.04 7.82 -51.93 -0.41 0.64 16 LS Contribution 279.17 15.07 4.21 4.21 Total: -1.00 -31.16 279.17 -6.96 -38.12 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.60 Total: 8.47 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.94 Total: -5.40 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.31 Total: -47.27 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.09 Total: -13.96 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.16 -6.96 -38.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695672767.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.328 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds