Wall clock time and date at job start Mon Mar 30 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21609 * 119.99893 * 359.97438 * 13 12 2 15 15 C 1.47108 * 119.99958 * 179.97438 * 13 12 2 16 16 C 1.32613 * 124.61916 * 180.02562 * 15 13 12 17 17 C 1.51108 * 110.76115 * 179.97438 * 16 15 13 18 18 C 1.54578 * 104.83931 * 16.59709 * 17 16 15 19 19 H 1.08997 * 110.98085 * 93.11112 * 18 17 16 20 20 N 1.46894 * 110.98334 * 216.87554 * 18 17 16 21 21 C 1.51107 * 124.62033 * 359.72175 * 15 13 12 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 26 26 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 27 27 H 1.08003 * 124.61782 * 0.02562 * 16 15 13 28 28 H 1.08998 * 110.36816 * 135.43807 * 17 16 15 29 29 H 1.09002 * 110.36551 * 257.75795 * 17 16 15 30 30 H 1.00902 * 110.99982 * 298.54034 * 20 18 17 31 31 H 1.00897 * 111.00345 * 62.50145 * 20 18 17 32 32 H 1.09001 * 110.36372 * 282.24154 * 21 15 13 33 33 H 1.09000 * 110.36864 * 44.56188 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8581 1.1619 2.4117 15 6 2.6368 -0.7118 3.5584 16 6 2.7977 -0.1414 4.7448 17 6 3.3155 -1.1402 5.7535 18 6 3.8523 -2.3165 4.9063 19 1 4.9172 -2.1990 4.7058 20 7 3.5820 -3.6031 5.5616 21 6 3.0190 -2.1728 3.6103 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7089 1.1612 -3.4844 26 1 2.2490 -1.6317 1.1527 27 1 2.5866 0.8955 4.9607 28 1 4.1190 -0.7008 6.3446 29 1 2.5073 -1.4779 6.4023 30 1 4.0426 -3.6563 6.4578 31 1 2.5897 -3.7598 5.6551 32 1 2.1266 -2.7968 3.6595 33 1 3.6213 -2.4385 2.7415 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695672767.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:57 Heat of formation + Delta-G solvation = -55.459784 kcal Electronic energy + Delta-G solvation = -15216.200353 eV Core-core repulsion = 12661.423276 eV Total energy + Delta-G solvation = -2554.777077 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.98576 -39.16875 -36.74663 -34.37785 -33.75321 -31.18088 -29.10078 -27.88576 -27.36010 -23.97782 -22.00012 -21.25481 -20.18052 -18.56475 -17.68956 -17.39995 -17.00998 -16.23893 -15.97449 -15.29191 -15.11283 -14.46046 -13.90592 -13.87477 -13.66735 -13.55378 -13.02764 -12.94424 -12.84328 -12.71037 -12.57041 -12.30687 -12.18470 -12.08005 -11.15316 -10.84605 -10.60192 -10.04780 -9.70551 -9.59214 -8.18857 -6.37163 0.42204 1.44643 1.47233 1.55146 2.34116 2.39041 2.64220 3.11342 3.40655 3.57274 3.85535 4.10112 4.20647 4.39652 4.59970 4.72244 4.73340 4.84216 4.88276 4.92732 5.05348 5.22138 5.34801 5.41838 5.51523 5.57728 5.66277 5.89105 6.06493 6.26290 6.67432 6.69547 6.92940 7.29580 7.49639 8.87567 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.040289 B = 0.006206 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.820549 B = 4510.905706 C = 4978.497519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.268 3.732 3 H -0.003 1.003 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.263 1.263 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.697 5.697 13 C 0.542 3.458 14 O -0.608 6.608 15 C -0.204 4.204 16 C -0.073 4.073 17 C -0.128 4.128 18 C 0.099 3.901 19 H 0.098 0.902 20 N -0.841 5.841 21 C -0.081 4.081 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.010 0.990 25 H 0.266 0.734 26 H 0.404 0.596 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.355 0.645 31 H 0.348 0.652 32 H 0.088 0.912 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -9.317 15.190 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.164 3.836 3 H 0.015 0.985 4 C -0.588 4.588 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.800 3.200 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.344 5.344 13 C 0.331 3.669 14 O -0.493 6.493 15 C -0.207 4.207 16 C -0.094 4.094 17 C -0.166 4.166 18 C -0.013 4.013 19 H 0.116 0.884 20 N -0.372 5.372 21 C -0.118 4.118 22 H 0.060 0.940 23 H 0.087 0.913 24 H 0.029 0.971 25 H 0.076 0.924 26 H 0.240 0.760 27 H 0.143 0.857 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.107 0.893 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.026 -8.759 14.420 17.604 hybrid contribution -0.451 0.559 -0.416 0.830 sum 4.575 -8.199 14.004 16.860 Atomic orbital electron populations 1.21893 0.98153 0.99517 0.99567 1.18397 0.91289 0.91925 0.81984 0.98486 1.21493 1.32851 1.13666 0.90755 0.90899 1.25833 0.94768 0.95570 1.02385 1.70046 1.36849 1.23921 1.24769 0.85349 0.78633 0.78710 0.77352 1.18761 1.21003 1.19563 1.46212 1.64445 1.14118 1.09635 1.18773 0.77537 0.86167 0.84413 1.90700 1.54237 1.18129 1.86221 1.21895 1.06992 0.98358 0.93463 1.24186 0.91943 0.99607 0.93639 1.22383 1.01833 0.95176 0.97253 1.22234 0.99638 0.87300 0.92148 0.88366 1.58771 1.17441 1.31522 1.29430 1.21288 1.00588 0.90331 0.99607 0.93984 0.91256 0.97099 0.92448 0.76046 0.85675 0.88216 0.88139 0.82984 0.83803 0.89325 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.26 71.98 0.67 -6.33 16 2 C 0.27 14.54 2.56 44.24 0.11 14.66 16 3 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 4 C -0.55 -29.95 8.73 25.60 0.22 -29.73 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -53.57 11.32 21.45 0.24 -53.33 16 8 Si 0.98 42.52 29.54 68.60 2.03 44.55 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.70 -31.06 5.06 -449.72 -2.28 -33.34 16 13 C 0.54 23.67 7.76 86.57 0.67 24.34 16 14 O -0.61 -32.18 16.43 -4.06 -0.07 -32.25 16 15 C -0.20 -6.34 6.09 -18.57 -0.11 -6.45 16 16 C -0.07 -1.89 10.43 24.65 0.26 -1.63 16 17 C -0.13 -2.02 6.52 30.51 0.20 -1.82 16 18 C 0.10 1.67 4.32 46.05 0.20 1.87 16 19 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 20 N -0.84 -11.13 9.36 -164.00 -1.54 -12.66 16 21 C -0.08 -1.87 5.74 30.57 0.18 -1.69 16 22 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 24 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.40 15.40 7.54 -92.70 -0.70 14.70 16 27 H 0.13 3.46 8.03 -2.91 -0.02 3.44 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.27 8.08 -2.39 -0.02 1.25 16 30 H 0.36 3.19 9.07 -89.69 -0.81 2.37 16 31 H 0.35 4.05 8.76 -89.70 -0.79 3.27 16 32 H 0.09 1.92 7.86 -2.39 -0.02 1.90 16 33 H 0.07 1.82 7.82 -2.39 -0.02 1.80 16 Total: -1.00 -69.71 279.17 0.07 -69.64 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -1.16 Total: 22.93 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 2.84 Total: -5.55 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -3.57 Total: -99.33 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.07 Total: -32.25 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -69.71 0.07 -69.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695672767.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.182 kcal (2) G-P(sol) polarization free energy of solvation -69.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds