Wall clock time and date at job start Mon Mar 30 2020 02:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30259 * 125.61730 * 2 1 4 4 C 1.34476 * 108.70380 * 179.97438 * 3 2 1 5 5 C 1.34334 * 107.66534 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.44281 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.46990 * 89.99834 * 6 5 4 8 8 C 1.46902 * 110.99573 * 180.02562 * 7 6 5 9 9 H 1.08997 * 109.47515 * 325.00070 * 8 7 6 10 10 C 1.52999 * 109.47197 * 85.00442 * 8 7 6 11 11 C 1.53007 * 109.46831 * 204.99716 * 8 7 6 12 12 C 1.50699 * 109.46764 * 65.00264 * 11 8 7 13 13 H 1.07998 * 120.00132 * 359.97438 * 12 11 8 14 14 C 1.37875 * 119.99812 * 179.97438 * 12 11 8 15 15 N 1.31512 * 120.00243 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00116 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47101 * 89.99888 * 16 14 12 18 18 H 1.48506 * 109.46917 * 210.00061 * 16 14 12 19 19 H 1.48500 * 109.46649 * 329.99855 * 16 14 12 20 20 O 1.33973 * 125.62568 * 180.28585 * 2 1 3 21 21 H 1.08997 * 109.46943 * 90.02807 * 1 2 3 22 22 H 1.09002 * 109.46875 * 210.01807 * 1 2 3 23 23 H 1.08999 * 109.47239 * 330.02207 * 1 2 3 24 24 H 1.07997 * 126.17099 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47064 * 330.00111 * 6 5 4 26 26 H 1.09000 * 109.47099 * 209.99837 * 6 5 4 27 27 H 1.00896 * 111.00309 * 56.04484 * 7 6 5 28 28 H 1.09000 * 109.47499 * 180.02562 * 10 8 7 29 29 H 1.09011 * 109.46887 * 299.99666 * 10 8 7 30 30 H 1.08999 * 109.47708 * 59.99506 * 10 8 7 31 31 H 1.09003 * 109.47093 * 185.00164 * 11 8 7 32 32 H 1.08994 * 109.46960 * 305.00224 * 11 8 7 33 33 H 0.97003 * 120.00854 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6677 0.0006 5 6 3.5698 -0.6755 0.0004 6 6 4.7938 -1.5547 0.0003 7 7 5.1914 -1.8406 1.3853 8 6 6.3845 -2.6968 1.4243 9 1 6.3542 -3.4004 0.5923 10 6 7.6393 -1.8286 1.3127 11 6 6.4147 -3.4694 2.7447 12 6 5.2430 -4.4154 2.8000 13 1 4.5462 -4.4608 1.9762 14 6 5.0606 -5.2230 3.9025 15 7 4.0378 -6.0483 3.9511 16 14 6.2654 -5.1440 5.3279 17 1 5.8074 -4.1261 6.3073 18 1 6.3365 -6.4713 5.9901 19 1 7.6100 -4.7719 4.8193 20 8 2.2874 -1.0890 -0.0054 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3633 -0.8898 0.5141 23 1 -0.3634 0.8902 0.5135 24 1 4.4157 1.3164 0.0011 25 1 5.6081 -1.0438 -0.5134 26 1 4.5697 -2.4895 -0.5137 27 1 4.4306 -2.2562 1.9015 28 1 8.5245 -2.4639 1.3412 29 1 7.6177 -1.2781 0.3720 30 1 7.6696 -1.1250 2.1447 31 1 7.3431 -4.0365 2.8127 32 1 6.3554 -2.7684 3.5772 33 1 3.9095 -6.6168 4.7266 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695838331.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:38 Heat of formation + Delta-G solvation = -14.314084 kcal Electronic energy + Delta-G solvation = -15104.761010 eV Core-core repulsion = 12551.768144 eV Total energy + Delta-G solvation = -2552.992866 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.31033 -38.44855 -35.76627 -35.03479 -33.79757 -32.02491 -29.75022 -28.78291 -25.62254 -24.37791 -23.19986 -21.94831 -21.14868 -18.99354 -17.94681 -17.81682 -16.84965 -16.43568 -16.04898 -15.60511 -14.92876 -14.65923 -14.22755 -13.89773 -13.70174 -13.65842 -13.49767 -13.40765 -13.24438 -12.63768 -12.52869 -12.29248 -12.10676 -11.79695 -11.64696 -11.32030 -11.27734 -10.78247 -9.72278 -9.35685 -8.30720 -6.34578 0.42209 1.36617 1.37002 1.49010 1.66271 1.73156 2.35156 3.03161 3.16603 3.44826 3.76813 4.09112 4.14861 4.25623 4.40423 4.54063 4.62517 4.66974 4.68326 4.69572 5.02476 5.03095 5.04690 5.13397 5.22330 5.30998 5.41304 5.49199 5.65904 6.16099 6.23864 6.35750 6.71532 6.72070 7.30209 8.85532 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.006766 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.836183 B = 4137.390914 C = 4825.039636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.179 3.821 3 N -0.512 5.512 4 C -0.026 4.026 5 C -0.056 4.056 6 C 0.148 3.852 7 N -0.681 5.681 8 C 0.097 3.903 9 H 0.030 0.970 10 C -0.130 4.130 11 C -0.014 4.014 12 C -0.527 4.527 13 H 0.030 0.970 14 C 0.006 3.994 15 N -0.950 5.950 16 Si 0.950 3.050 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.244 1.244 20 O -0.223 6.223 21 H 0.114 0.886 22 H 0.096 0.904 23 H 0.114 0.886 24 H 0.206 0.794 25 H 0.130 0.870 26 H 0.035 0.965 27 H 0.340 0.660 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.022 0.978 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 11.994 -8.004 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.027 4.027 3 N -0.243 5.243 4 C -0.165 4.165 5 C -0.109 4.109 6 C 0.019 3.981 7 N -0.313 5.313 8 C -0.012 4.012 9 H 0.048 0.952 10 C -0.188 4.188 11 C -0.052 4.052 12 C -0.565 4.565 13 H 0.049 0.951 14 C -0.191 4.191 15 N -0.590 5.590 16 Si 0.774 3.226 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.168 1.168 20 O -0.111 6.111 21 H 0.132 0.868 22 H 0.115 0.885 23 H 0.132 0.868 24 H 0.222 0.778 25 H 0.147 0.853 26 H 0.053 0.947 27 H 0.159 0.841 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.121 13.006 -7.844 15.189 hybrid contribution -0.059 -2.046 0.508 2.109 sum -0.180 10.960 -7.336 13.190 Atomic orbital electron populations 1.20526 0.78332 1.06217 1.06225 1.27334 0.98157 0.78123 0.99113 1.70448 1.02707 1.30888 1.20233 1.23367 0.95389 0.92900 1.04840 1.23612 0.83270 0.96084 1.07896 1.20425 0.89937 0.96086 0.91692 1.60807 1.08953 1.50179 1.11388 1.21425 0.90558 0.92234 0.97006 0.95225 1.21766 0.95305 0.99434 1.02302 1.19736 0.95842 0.94627 0.94977 1.21368 1.10479 1.21321 1.03351 0.95123 1.25977 0.97105 0.94487 1.01505 1.70068 1.31546 1.25976 1.31448 0.85653 0.80646 0.77396 0.78885 1.19621 1.21233 1.16754 1.84422 1.17614 1.38933 1.70106 0.86819 0.88484 0.86763 0.77758 0.85269 0.94723 0.84121 0.91858 0.91420 0.92420 0.95222 0.95968 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.51 71.24 0.75 -0.23 16 2 C 0.18 5.21 8.34 88.34 0.74 5.94 16 3 N -0.51 -15.96 11.29 -303.81 -3.43 -19.39 16 4 C -0.03 -0.78 11.80 83.40 0.98 0.20 16 5 C -0.06 -1.81 6.90 24.79 0.17 -1.64 16 6 C 0.15 4.59 6.03 85.56 0.52 5.10 16 7 N -0.68 -25.34 6.30 -495.55 -3.12 -28.46 16 8 C 0.10 3.63 2.59 44.92 0.12 3.75 16 9 H 0.03 1.16 7.80 -2.39 -0.02 1.14 16 10 C -0.13 -3.74 9.41 71.98 0.68 -3.06 16 11 C -0.01 -0.65 3.64 29.85 0.11 -0.54 16 12 C -0.53 -29.65 8.67 25.60 0.22 -29.43 16 13 H 0.03 1.90 7.73 -2.91 -0.02 1.88 16 14 C 0.01 0.37 5.47 84.65 0.46 0.83 16 15 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 16 Si 0.95 44.19 27.47 68.60 1.88 46.07 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 20 O -0.22 -7.68 10.78 -3.70 -0.04 -7.72 16 21 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.21 4.80 8.06 -2.91 -0.02 4.78 16 25 H 0.13 3.14 7.43 -2.39 -0.02 3.12 16 26 H 0.03 1.15 8.06 -2.39 -0.02 1.13 16 27 H 0.34 15.16 7.20 -89.70 -0.65 14.51 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.60 7.45 -2.38 -0.02 1.58 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 32 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -69.04 281.45 0.73 -68.31 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.40 Total: 19.31 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 4.75 Total: -19.08 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -6.25 Total: -106.88 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.04 Total: -7.72 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -69.04 0.73 -68.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838331.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.992 kcal (2) G-P(sol) polarization free energy of solvation -69.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds