Wall clock time and date at job start Mon Mar 30 2020 02:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34746 * 126.44257 * 2 1 4 4 C 1.33969 * 107.75296 * 179.97438 * 3 2 1 5 5 N 1.30250 * 108.76346 * 359.72500 * 4 3 2 6 6 C 1.34330 * 126.44017 * 179.97438 * 2 1 3 7 7 C 1.50693 * 126.16981 * 0.02562 * 6 2 1 8 8 N 1.46908 * 109.47347 * 89.99844 * 7 6 2 9 9 C 1.46894 * 110.99955 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47779 * 324.99869 * 9 8 7 11 11 C 1.52998 * 109.47018 * 85.00186 * 9 8 7 12 12 C 1.53002 * 109.47229 * 204.99899 * 9 8 7 13 13 C 1.50706 * 109.47153 * 64.99752 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 H 1.08998 * 109.47083 * 270.02113 * 1 2 3 22 22 H 1.08995 * 109.47038 * 30.03025 * 1 2 3 23 23 H 1.09010 * 109.46680 * 150.02711 * 1 2 3 24 24 H 1.08003 * 125.61428 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47128 * 329.99954 * 7 6 2 26 26 H 1.09003 * 109.47028 * 209.99550 * 7 6 2 27 27 H 1.00904 * 110.99848 * 56.04922 * 8 7 6 28 28 H 1.08995 * 109.47190 * 60.00037 * 11 9 8 29 29 H 1.09007 * 109.46878 * 179.97438 * 11 9 8 30 30 H 1.09001 * 109.46923 * 299.99707 * 11 9 8 31 31 H 1.09004 * 109.47178 * 305.00542 * 12 9 8 32 32 H 1.08993 * 109.47411 * 185.00225 * 12 9 8 33 33 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3075 1.0840 0.0000 4 6 3.5765 0.6547 0.0006 5 7 3.5782 -0.6478 0.0068 6 6 2.3050 -1.0807 0.0005 7 6 1.8546 -2.5187 0.0006 8 7 1.7087 -2.9863 -1.3844 9 6 1.2704 -4.3878 -1.4235 10 1 1.7177 -4.9318 -0.5915 11 6 -0.2543 -4.4486 -1.3117 12 6 1.7107 -5.0233 -2.7438 13 6 3.2158 -5.0745 -2.7993 14 1 3.7999 -4.6924 -1.9751 15 6 3.8473 -5.6091 -3.9022 16 7 3.1359 -6.0793 -4.9035 17 14 5.7129 -5.6733 -3.9708 18 1 6.1402 -6.2955 -5.2497 19 1 6.2591 -4.2950 -3.8840 20 1 6.2225 -6.4803 -2.8331 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8897 -0.5143 23 1 -0.3633 -0.8903 -0.5135 24 1 4.4536 1.2849 0.0011 25 1 0.8965 -2.5994 0.5141 26 1 2.5952 -3.1313 0.5147 27 1 2.5668 -2.8616 -1.9005 28 1 -0.7016 -3.9048 -2.1437 29 1 -0.5795 -5.4886 -1.3411 30 1 -0.5680 -3.9959 -0.3711 31 1 1.3365 -4.4275 -3.5764 32 1 1.3099 -6.0346 -2.8117 33 1 2.1672 -6.0462 -4.8679 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695840707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:36 Heat of formation + Delta-G solvation = 2.849881 kcal Electronic energy + Delta-G solvation = -15295.217625 eV Core-core repulsion = 12742.969045 eV Total energy + Delta-G solvation = -2552.248581 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.19128 -36.94218 -34.77376 -33.17661 -32.36701 -30.27075 -27.12958 -26.93305 -24.67900 -22.83246 -21.99288 -20.52145 -19.66748 -17.08032 -16.66617 -16.56872 -15.38600 -14.66822 -14.46853 -14.05370 -13.67013 -13.31226 -13.07890 -12.64826 -12.41381 -12.19076 -12.01979 -11.36813 -11.30492 -11.00368 -10.86236 -10.77268 -10.43103 -10.33032 -10.08442 -9.53192 -8.55839 -8.50045 -8.31346 -7.74279 -6.34388 -4.03721 1.57910 2.81076 2.87886 3.46773 3.48632 3.66861 4.26646 4.56957 4.86128 4.96252 5.12479 5.25605 5.41820 5.46517 5.61325 5.74214 5.86083 5.91878 6.08528 6.12103 6.18213 6.21389 6.42326 6.44730 6.77665 6.80902 7.28693 7.41682 7.86524 7.89444 8.15655 8.22863 8.46618 8.90125 9.68324 11.06344 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.007458 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.352571 B = 3753.367828 C = 4548.523747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.035 4.035 3 O -0.211 6.211 4 C 0.157 3.843 5 N -0.476 5.476 6 C -0.003 4.003 7 C 0.139 3.861 8 N -0.678 5.678 9 C 0.094 3.906 10 H 0.032 0.968 11 C -0.137 4.137 12 C 0.007 3.993 13 C -0.604 4.604 14 H 0.046 0.954 15 C 0.018 3.982 16 N -0.911 5.911 17 Si 1.066 2.934 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.289 1.289 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.100 0.900 24 H 0.247 0.753 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.360 0.640 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.016 0.984 32 H 0.013 0.987 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 12.041 10.633 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 O -0.098 6.098 4 C -0.069 4.069 5 N -0.205 5.205 6 C -0.123 4.123 7 C 0.009 3.991 8 N -0.313 5.313 9 C -0.016 4.016 10 H 0.050 0.950 11 C -0.195 4.195 12 C -0.030 4.030 13 C -0.642 4.642 14 H 0.065 0.935 15 C -0.186 4.186 16 N -0.547 5.547 17 Si 0.894 3.106 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.215 1.215 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.118 0.882 24 H 0.263 0.737 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.182 0.818 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.031 0.969 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.286 11.470 9.619 15.326 hybrid contribution -0.766 0.560 1.246 1.566 sum -4.052 12.030 10.865 16.708 Atomic orbital electron populations 1.20281 0.84012 1.04792 1.03182 1.23181 0.94894 0.83969 1.06794 1.84388 1.18463 1.36662 1.70239 1.27909 0.85572 0.91251 1.02187 1.70357 1.23233 1.10194 1.16711 1.21489 0.87698 0.97332 1.05781 1.20166 0.99237 0.86977 0.92754 1.60666 1.39459 1.20986 1.10167 1.21481 0.93388 0.86975 0.99730 0.94953 1.21825 0.96803 1.00350 1.00483 1.19399 0.96871 0.94974 0.91742 1.22007 0.91509 1.44804 1.05893 0.93529 1.25782 1.06897 0.93428 0.92490 1.70781 1.08380 1.43292 1.32265 0.83589 0.74499 0.76509 0.76000 1.20788 1.21370 1.21537 0.90342 0.90652 0.88170 0.73738 0.90330 0.94003 0.81840 0.92637 0.93238 0.94243 0.96532 0.96906 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.04 36.01 0.36 -0.33 16 2 C -0.03 -0.50 7.39 -35.68 -0.26 -0.76 16 3 O -0.21 -2.89 10.78 5.37 0.06 -2.84 16 4 C 0.16 2.05 13.23 52.09 0.69 2.74 16 5 N -0.48 -8.12 11.29 -11.18 -0.13 -8.24 16 6 C 0.00 -0.05 6.62 -82.81 -0.55 -0.60 16 7 C 0.14 2.38 5.64 -4.98 -0.03 2.35 16 8 N -0.68 -13.58 6.30 -107.99 -0.68 -14.26 16 9 C 0.09 1.97 2.59 -67.72 -0.18 1.79 16 10 H 0.03 0.70 7.80 -51.93 -0.40 0.30 16 11 C -0.14 -2.37 9.41 37.16 0.35 -2.02 16 12 C 0.01 0.19 3.88 -27.88 -0.11 0.08 16 13 C -0.60 -17.23 8.12 -34.44 -0.28 -17.50 16 14 H 0.05 1.33 7.49 -52.49 -0.39 0.93 16 15 C 0.02 0.53 5.46 -17.82 -0.10 0.44 16 16 N -0.91 -28.20 13.65 55.43 0.76 -27.44 16 17 Si 1.07 25.95 29.90 -169.99 -5.08 20.87 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.10 1.11 7.79 -51.92 -0.40 0.71 16 24 H 0.25 1.87 8.06 -52.48 -0.42 1.44 16 25 H 0.08 1.16 7.08 -51.93 -0.37 0.79 16 26 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 27 H 0.36 8.32 7.20 -39.29 -0.28 8.03 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.58 7.45 -51.93 -0.39 0.20 16 31 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 32 H 0.01 0.34 8.00 -51.93 -0.42 -0.07 16 33 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 LS Contribution 282.37 15.07 4.26 4.26 Total: -1.00 -32.85 282.37 -5.61 -38.47 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.69 Total: 3.01 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -0.10 Total: -13.83 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.05 Total: -49.94 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: 0.06 Total: -2.84 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.85 -5.61 -38.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.315 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds