Wall clock time and date at job start Mon Mar 30 2020 02:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34746 * 126.44257 * 2 1 4 4 C 1.33969 * 107.75296 * 179.97438 * 3 2 1 5 5 N 1.30250 * 108.76346 * 359.72500 * 4 3 2 6 6 C 1.34330 * 126.44017 * 179.97438 * 2 1 3 7 7 C 1.50693 * 126.16981 * 0.02562 * 6 2 1 8 8 N 1.46908 * 109.47347 * 89.99844 * 7 6 2 9 9 C 1.46894 * 110.99955 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47779 * 324.99869 * 9 8 7 11 11 C 1.52998 * 109.47018 * 85.00186 * 9 8 7 12 12 C 1.53002 * 109.47229 * 204.99899 * 9 8 7 13 13 C 1.50706 * 109.47153 * 64.99752 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 H 1.08998 * 109.47083 * 270.02113 * 1 2 3 22 22 H 1.08995 * 109.47038 * 30.03025 * 1 2 3 23 23 H 1.09010 * 109.46680 * 150.02711 * 1 2 3 24 24 H 1.08003 * 125.61428 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47128 * 329.99954 * 7 6 2 26 26 H 1.09003 * 109.47028 * 209.99550 * 7 6 2 27 27 H 1.00904 * 110.99848 * 56.04922 * 8 7 6 28 28 H 1.08995 * 109.47190 * 60.00037 * 11 9 8 29 29 H 1.09007 * 109.46878 * 179.97438 * 11 9 8 30 30 H 1.09001 * 109.46923 * 299.99707 * 11 9 8 31 31 H 1.09004 * 109.47178 * 305.00542 * 12 9 8 32 32 H 1.08993 * 109.47411 * 185.00225 * 12 9 8 33 33 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3075 1.0840 0.0000 4 6 3.5765 0.6547 0.0006 5 7 3.5782 -0.6478 0.0068 6 6 2.3050 -1.0807 0.0005 7 6 1.8546 -2.5187 0.0006 8 7 1.7087 -2.9863 -1.3844 9 6 1.2704 -4.3878 -1.4235 10 1 1.7177 -4.9318 -0.5915 11 6 -0.2543 -4.4486 -1.3117 12 6 1.7107 -5.0233 -2.7438 13 6 3.2158 -5.0745 -2.7993 14 1 3.7999 -4.6924 -1.9751 15 6 3.8473 -5.6091 -3.9022 16 7 3.1359 -6.0793 -4.9035 17 14 5.7129 -5.6733 -3.9708 18 1 6.1402 -6.2955 -5.2497 19 1 6.2591 -4.2950 -3.8840 20 1 6.2225 -6.4803 -2.8331 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8897 -0.5143 23 1 -0.3633 -0.8903 -0.5135 24 1 4.4536 1.2849 0.0011 25 1 0.8965 -2.5994 0.5141 26 1 2.5952 -3.1313 0.5147 27 1 2.5668 -2.8616 -1.9005 28 1 -0.7016 -3.9048 -2.1437 29 1 -0.5795 -5.4886 -1.3411 30 1 -0.5680 -3.9959 -0.3711 31 1 1.3365 -4.4275 -3.5764 32 1 1.3099 -6.0346 -2.8117 33 1 2.1672 -6.0462 -4.8679 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695840707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:35 Heat of formation + Delta-G solvation = -22.493168 kcal Electronic energy + Delta-G solvation = -15296.316582 eV Core-core repulsion = 12742.969045 eV Total energy + Delta-G solvation = -2553.347538 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.27200 -38.56579 -36.11016 -34.99659 -33.69175 -31.72812 -28.96245 -28.12546 -26.03429 -24.90173 -23.09798 -21.67204 -21.38617 -18.95322 -18.08031 -17.67989 -16.84875 -16.17080 -15.82994 -15.63238 -15.27552 -14.89608 -14.28716 -13.84588 -13.79692 -13.46313 -13.30663 -13.16431 -12.99589 -12.55467 -12.54335 -12.38668 -12.09868 -11.98461 -11.51723 -11.35106 -10.66983 -10.57362 -9.64518 -9.33267 -8.69810 -6.39477 0.53036 1.48638 1.56347 1.66723 1.75950 1.89839 2.53025 3.11461 3.24992 3.56574 3.81520 3.91845 4.16550 4.34444 4.41680 4.54854 4.59970 4.64463 4.69292 4.78718 4.93583 5.08149 5.10769 5.15013 5.22796 5.27048 5.36718 5.44836 5.94964 6.16241 6.23955 6.37513 6.58200 6.79502 7.40655 8.71262 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.007458 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.352571 B = 3753.367828 C = 4548.523747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.026 4.026 3 O -0.211 6.211 4 C 0.173 3.827 5 N -0.527 5.527 6 C -0.042 4.042 7 C 0.145 3.855 8 N -0.674 5.674 9 C 0.099 3.901 10 H 0.023 0.977 11 C -0.127 4.127 12 C 0.011 3.989 13 C -0.611 4.611 14 H 0.042 0.958 15 C -0.034 4.034 16 N -0.935 5.935 17 Si 1.112 2.888 18 H -0.281 1.281 19 H -0.273 1.273 20 H -0.272 1.272 21 H 0.104 0.896 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.293 0.707 25 H 0.106 0.894 26 H 0.022 0.978 27 H 0.338 0.662 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.071 0.929 31 H -0.005 1.005 32 H -0.004 1.004 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 13.591 11.890 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 O -0.098 6.098 4 C -0.053 4.053 5 N -0.256 5.256 6 C -0.160 4.160 7 C 0.016 3.984 8 N -0.306 5.306 9 C -0.010 4.010 10 H 0.041 0.959 11 C -0.185 4.185 12 C -0.026 4.026 13 C -0.649 4.649 14 H 0.060 0.940 15 C -0.232 4.232 16 N -0.573 5.573 17 Si 0.934 3.066 18 H -0.206 1.206 19 H -0.199 1.199 20 H -0.197 1.197 21 H 0.122 0.878 22 H 0.109 0.891 23 H 0.113 0.887 24 H 0.308 0.692 25 H 0.124 0.876 26 H 0.040 0.960 27 H 0.157 0.843 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.013 0.987 32 H 0.014 0.986 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.446 13.016 10.905 17.327 hybrid contribution -0.734 0.148 0.889 1.163 sum -4.181 13.165 11.794 18.163 Atomic orbital electron populations 1.20454 0.81446 1.05311 1.04997 1.23735 0.96299 0.83349 1.04676 1.84428 1.18787 1.36412 1.70167 1.28929 0.86429 0.90688 0.99253 1.70301 1.23954 1.12350 1.18970 1.21453 0.88407 0.97445 1.08709 1.20153 1.00078 0.87448 0.90720 1.60744 1.38008 1.19932 1.11959 1.21370 0.96004 0.87263 0.96384 0.95882 1.21726 0.93466 1.01137 1.02156 1.19310 0.95451 0.94070 0.93777 1.22339 0.93081 1.43954 1.05568 0.93975 1.27258 1.11068 0.92735 0.92176 1.70909 1.07782 1.45224 1.33346 0.82991 0.69554 0.77478 0.76590 1.20577 1.19878 1.19708 0.87756 0.89054 0.88665 0.69210 0.87639 0.95971 0.84328 0.92782 0.92699 0.91011 0.98700 0.98595 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.04 71.24 0.72 -0.47 16 2 C -0.03 -0.70 7.39 24.79 0.18 -0.52 16 3 O -0.21 -5.29 10.78 -3.68 -0.04 -5.33 16 4 C 0.17 4.14 13.23 130.48 1.73 5.87 16 5 N -0.53 -17.54 11.29 -304.07 -3.43 -20.98 16 6 C -0.04 -1.36 6.62 41.26 0.27 -1.08 16 7 C 0.15 4.90 5.64 85.55 0.48 5.39 16 8 N -0.67 -27.03 6.30 -495.58 -3.12 -30.15 16 9 C 0.10 4.18 2.59 44.92 0.12 4.29 16 10 H 0.02 1.01 7.80 -2.39 -0.02 0.99 16 11 C -0.13 -4.21 9.41 71.98 0.68 -3.53 16 12 C 0.01 0.59 3.88 29.85 0.12 0.71 16 13 C -0.61 -35.60 8.12 25.60 0.21 -35.39 16 14 H 0.04 2.44 7.49 -2.91 -0.02 2.42 16 15 C -0.03 -2.04 5.46 84.65 0.46 -1.58 16 16 N -0.94 -59.09 13.65 21.45 0.29 -58.80 16 17 Si 1.11 52.30 29.90 68.60 2.05 54.35 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.09 1.86 7.79 -2.38 -0.02 1.84 16 24 H 0.29 3.44 8.06 -2.91 -0.02 3.42 16 25 H 0.11 2.90 7.08 -2.39 -0.02 2.88 16 26 H 0.02 0.82 8.05 -2.39 -0.02 0.81 16 27 H 0.34 16.00 7.20 -89.69 -0.65 15.35 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.07 1.92 7.45 -2.39 -0.02 1.90 16 31 H -0.01 -0.30 8.01 -2.39 -0.02 -0.32 16 32 H 0.00 -0.23 8.00 -2.39 -0.02 -0.25 16 33 H 0.26 16.36 7.22 -92.71 -0.67 15.69 16 Total: -1.00 -72.56 282.37 1.26 -71.30 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.55 Total: 15.93 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 4.96 Total: -26.33 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -6.26 Total: -109.93 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.04 Total: -5.33 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.05 Total: 54.35 kcal Total: -72.56 1.26 -71.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.807 kcal (2) G-P(sol) polarization free energy of solvation -72.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds