Wall clock time and date at job start Mon Mar 30 2020 02:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34330 * 126.44308 * 2 1 4 4 N 1.34479 * 107.67212 * 179.77264 * 3 2 1 5 5 C 1.30258 * 108.69485 * 0.41663 * 4 3 2 6 6 C 1.50706 * 125.61642 * 179.83786 * 5 4 3 7 7 N 1.46902 * 109.46577 * 89.69745 * 6 5 4 8 8 C 1.46905 * 110.99800 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.46881 * 35.00094 * 8 7 6 10 10 C 1.53006 * 109.47010 * 275.00400 * 8 7 6 11 11 C 1.53002 * 109.47226 * 155.00097 * 8 7 6 12 12 C 1.50693 * 109.46929 * 295.00057 * 11 8 7 13 13 H 1.08004 * 120.00612 * 0.02562 * 12 11 8 14 14 C 1.37879 * 120.00085 * 179.97438 * 12 11 8 15 15 N 1.31513 * 120.00382 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99781 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47290 * 89.99581 * 16 14 12 18 18 H 1.48499 * 109.47441 * 209.99977 * 16 14 12 19 19 H 1.48502 * 109.47219 * 329.99845 * 16 14 12 20 20 O 1.33964 * 108.76164 * 359.57974 * 5 4 3 21 21 H 1.08994 * 109.46831 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46912 * 299.99619 * 1 2 3 23 23 H 1.08996 * 109.47353 * 59.99664 * 1 2 3 24 24 H 1.08008 * 126.16763 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47318 * 209.69252 * 6 5 4 26 26 H 1.09000 * 109.47161 * 329.69883 * 6 5 4 27 27 H 1.00898 * 110.99915 * 56.05080 * 7 6 5 28 28 H 1.08993 * 109.47294 * 59.99657 * 10 8 7 29 29 H 1.09001 * 109.46566 * 179.97438 * 10 8 7 30 30 H 1.08998 * 109.47049 * 299.99591 * 10 8 7 31 31 H 1.08997 * 109.46700 * 54.99789 * 11 8 7 32 32 H 1.08997 * 109.47081 * 175.00063 * 11 8 7 33 33 H 0.97001 * 120.00114 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6479 0.0051 5 6 3.5765 -0.6547 -0.0008 6 6 4.8005 -1.5339 -0.0015 7 7 5.1986 -1.8199 1.3833 8 6 6.3910 -2.6771 1.4220 9 1 7.0478 -2.4236 0.5899 10 6 5.9687 -4.1435 1.3098 11 6 7.1330 -2.4596 2.7422 12 6 7.6555 -1.0472 2.7978 13 1 7.4759 -0.3720 1.9742 14 6 8.3620 -0.6164 3.9007 15 7 8.8184 0.6160 3.9492 16 14 8.6720 -1.7838 5.3257 17 1 9.9476 -2.5105 5.1017 18 1 8.7586 -1.0098 6.5900 19 1 7.5563 -2.7595 5.4181 20 8 2.3075 -1.0839 -0.0005 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.9822 2.1113 0.0004 25 1 4.5762 -2.4686 -0.5154 26 1 5.6147 -1.0230 -0.5155 27 1 4.4380 -2.2356 1.8997 28 1 5.4401 -4.2985 0.3694 29 1 6.8535 -4.7795 1.3380 30 1 5.3118 -4.3970 2.1419 31 1 6.4499 -2.6273 3.5748 32 1 7.9668 -3.1583 2.8097 33 1 9.3157 0.9189 4.7250 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695861155.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:37 Heat of formation + Delta-G solvation = 18.009980 kcal Electronic energy + Delta-G solvation = -15067.700147 eV Core-core repulsion = 12516.108958 eV Total energy + Delta-G solvation = -2551.591189 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.13291 -37.02504 -34.52605 -33.19489 -32.27950 -30.88749 -27.88864 -27.14321 -24.53488 -22.57272 -22.08706 -20.79691 -19.80762 -16.79587 -16.66075 -16.50529 -15.20786 -14.75736 -14.56914 -14.04405 -13.57937 -13.39992 -13.24068 -12.65840 -12.46447 -12.40553 -12.30378 -11.90859 -11.71789 -11.26788 -11.05822 -10.70272 -10.34042 -10.22182 -9.75278 -9.57172 -9.00281 -8.55446 -8.36641 -7.77439 -5.84387 -3.78603 1.55308 2.75769 2.90651 3.39418 3.47251 3.49852 4.22552 4.59429 4.77874 4.81082 5.03434 5.13136 5.24335 5.44333 5.48873 5.49373 5.56064 5.71419 5.77360 5.85916 6.02005 6.14914 6.27621 6.44195 6.47374 6.75172 7.13130 7.26011 7.67610 7.84592 7.98912 8.01621 8.77530 9.28242 9.77907 11.29766 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032541 B = 0.006312 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.259195 B = 4434.662600 C = 4877.956654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.063 4.063 3 C -0.041 4.041 4 N -0.460 5.460 5 C 0.202 3.798 6 C 0.158 3.842 7 N -0.655 5.655 8 C 0.100 3.900 9 H 0.076 0.924 10 C -0.185 4.185 11 C -0.004 4.004 12 C -0.491 4.491 13 H 0.078 0.922 14 C 0.061 3.939 15 N -0.907 5.907 16 Si 0.874 3.126 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.269 1.269 20 O -0.207 6.207 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.180 0.820 25 H 0.049 0.951 26 H 0.113 0.887 27 H 0.335 0.665 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.016 0.984 32 H 0.015 0.985 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.025 -5.638 -8.596 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 C -0.180 4.180 4 N -0.188 5.188 5 C -0.006 4.006 6 C 0.028 3.972 7 N -0.287 5.287 8 C -0.009 4.009 9 H 0.094 0.906 10 C -0.244 4.244 11 C -0.041 4.041 12 C -0.529 4.529 13 H 0.096 0.904 14 C -0.139 4.139 15 N -0.548 5.548 16 Si 0.702 3.298 17 H -0.206 1.206 18 H -0.217 1.217 19 H -0.194 1.194 20 O -0.095 6.095 21 H 0.093 0.907 22 H 0.105 0.895 23 H 0.103 0.897 24 H 0.197 0.803 25 H 0.067 0.933 26 H 0.131 0.869 27 H 0.153 0.847 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.018 -4.610 -8.411 16.985 hybrid contribution -0.834 -1.620 0.696 1.950 sum -14.851 -6.230 -7.715 17.858 Atomic orbital electron populations 1.20205 0.84334 1.03948 1.03579 1.23372 0.94866 0.84883 1.08531 1.23119 0.88096 1.00259 1.06527 1.70525 1.22376 1.09339 1.16546 1.26346 0.83621 0.90560 1.00052 1.20339 0.88670 0.94673 0.93484 1.60480 1.07759 1.51241 1.09195 1.21614 0.90590 0.87064 1.01647 0.90562 1.22618 1.01670 0.99677 1.00437 1.19606 0.94450 0.98175 0.91900 1.21054 1.31695 0.95458 1.04682 0.90359 1.25018 0.95946 0.94856 0.98066 1.69922 1.38433 1.16391 1.30036 0.86882 0.78713 0.81460 0.82716 1.20634 1.21683 1.19351 1.84366 1.18209 1.36733 1.70177 0.90693 0.89534 0.89668 0.80265 0.93310 0.86853 0.84742 0.93858 0.92052 0.92887 0.96565 0.96673 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.43 36.01 0.38 -0.13 16 2 C -0.06 -0.84 7.39 -35.69 -0.26 -1.10 16 3 C -0.04 -0.61 11.80 -17.77 -0.21 -0.82 16 4 N -0.46 -8.57 11.29 -11.10 -0.13 -8.70 16 5 C 0.20 3.45 7.86 -12.94 -0.10 3.35 16 6 C 0.16 2.54 6.11 -4.97 -0.03 2.51 16 7 N -0.66 -12.31 5.95 -107.98 -0.64 -12.95 16 8 C 0.10 1.89 2.53 -67.71 -0.17 1.72 16 9 H 0.08 1.46 7.80 -51.93 -0.41 1.05 16 10 C -0.18 -2.76 9.16 37.16 0.34 -2.42 16 11 C 0.00 -0.09 3.72 -27.89 -0.10 -0.19 16 12 C -0.49 -14.21 9.39 -34.44 -0.32 -14.53 16 13 H 0.08 2.49 7.99 -52.48 -0.42 2.07 16 14 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 15 N -0.91 -29.04 13.96 55.43 0.77 -28.27 16 16 Si 0.87 22.27 27.47 -169.99 -4.67 17.60 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 20 O -0.21 -3.21 10.77 5.39 0.06 -3.15 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.18 2.08 8.06 -52.48 -0.42 1.66 16 25 H 0.05 0.65 7.43 -51.93 -0.39 0.26 16 26 H 0.11 1.87 8.06 -51.93 -0.42 1.45 16 27 H 0.33 5.87 8.46 -39.29 -0.33 5.53 16 28 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 32 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 33 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 283.09 15.07 4.27 4.27 Total: -1.00 -34.36 283.09 -5.74 -40.10 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.82 Total: 1.00 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -0.59 Total: -9.90 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.01 Total: -49.92 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: 0.06 Total: -3.15 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -34.36 -5.74 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861155.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.113 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds