Wall clock time and date at job start Mon Mar 30 2020 02:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34330 * 126.44308 * 2 1 4 4 N 1.34479 * 107.67212 * 179.77264 * 3 2 1 5 5 C 1.30258 * 108.69485 * 0.41663 * 4 3 2 6 6 C 1.50706 * 125.61642 * 179.83786 * 5 4 3 7 7 N 1.46902 * 109.46577 * 89.69745 * 6 5 4 8 8 C 1.46905 * 110.99800 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.46881 * 35.00094 * 8 7 6 10 10 C 1.53006 * 109.47010 * 275.00400 * 8 7 6 11 11 C 1.53002 * 109.47226 * 155.00097 * 8 7 6 12 12 C 1.50693 * 109.46929 * 295.00057 * 11 8 7 13 13 H 1.08004 * 120.00612 * 0.02562 * 12 11 8 14 14 C 1.37879 * 120.00085 * 179.97438 * 12 11 8 15 15 N 1.31513 * 120.00382 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99781 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47290 * 89.99581 * 16 14 12 18 18 H 1.48499 * 109.47441 * 209.99977 * 16 14 12 19 19 H 1.48502 * 109.47219 * 329.99845 * 16 14 12 20 20 O 1.33964 * 108.76164 * 359.57974 * 5 4 3 21 21 H 1.08994 * 109.46831 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46912 * 299.99619 * 1 2 3 23 23 H 1.08996 * 109.47353 * 59.99664 * 1 2 3 24 24 H 1.08008 * 126.16763 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47318 * 209.69252 * 6 5 4 26 26 H 1.09000 * 109.47161 * 329.69883 * 6 5 4 27 27 H 1.00898 * 110.99915 * 56.05080 * 7 6 5 28 28 H 1.08993 * 109.47294 * 59.99657 * 10 8 7 29 29 H 1.09001 * 109.46566 * 179.97438 * 10 8 7 30 30 H 1.08998 * 109.47049 * 299.99591 * 10 8 7 31 31 H 1.08997 * 109.46700 * 54.99789 * 11 8 7 32 32 H 1.08997 * 109.47081 * 175.00063 * 11 8 7 33 33 H 0.97001 * 120.00114 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6479 0.0051 5 6 3.5765 -0.6547 -0.0008 6 6 4.8005 -1.5339 -0.0015 7 7 5.1986 -1.8199 1.3833 8 6 6.3910 -2.6771 1.4220 9 1 7.0478 -2.4236 0.5899 10 6 5.9687 -4.1435 1.3098 11 6 7.1330 -2.4596 2.7422 12 6 7.6555 -1.0472 2.7978 13 1 7.4759 -0.3720 1.9742 14 6 8.3620 -0.6164 3.9007 15 7 8.8184 0.6160 3.9492 16 14 8.6720 -1.7838 5.3257 17 1 9.9476 -2.5105 5.1017 18 1 8.7586 -1.0098 6.5900 19 1 7.5563 -2.7595 5.4181 20 8 2.3075 -1.0839 -0.0005 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.9822 2.1113 0.0004 25 1 4.5762 -2.4686 -0.5154 26 1 5.6147 -1.0230 -0.5155 27 1 4.4380 -2.2356 1.8997 28 1 5.4401 -4.2985 0.3694 29 1 6.8535 -4.7795 1.3380 30 1 5.3118 -4.3970 2.1419 31 1 6.4499 -2.6273 3.5748 32 1 7.9668 -3.1583 2.8097 33 1 9.3157 0.9189 4.7250 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695861155.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:37 Heat of formation + Delta-G solvation = -9.494789 kcal Electronic energy + Delta-G solvation = -15068.892844 eV Core-core repulsion = 12516.108958 eV Total energy + Delta-G solvation = -2552.783886 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.30389 -38.49053 -35.75739 -34.93581 -33.80348 -32.26813 -29.65855 -28.26570 -25.74617 -24.46535 -23.25193 -21.99699 -21.42977 -18.75969 -17.98451 -17.83951 -16.67549 -16.21533 -15.94025 -15.59511 -14.98779 -14.53772 -14.31255 -14.03956 -13.79934 -13.74384 -13.44074 -13.33237 -13.17268 -12.83438 -12.42142 -12.32950 -12.13945 -11.61072 -11.46040 -11.44885 -11.15468 -10.65843 -9.65882 -9.14999 -8.14826 -6.14293 0.41474 1.38323 1.41374 1.52255 1.63262 1.71719 2.44525 3.07717 3.19633 3.47264 3.85636 4.05606 4.16813 4.17228 4.38823 4.44333 4.50798 4.60820 4.70951 4.74933 4.96092 5.06666 5.16058 5.19760 5.21462 5.28465 5.33839 5.50766 5.77935 6.18194 6.45537 6.57843 6.81189 6.94799 7.46198 9.03221 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.032541 B = 0.006312 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.259195 B = 4434.662600 C = 4877.956654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.046 4.046 3 C -0.072 4.072 4 N -0.506 5.506 5 C 0.182 3.818 6 C 0.166 3.834 7 N -0.684 5.684 8 C 0.104 3.896 9 H 0.067 0.933 10 C -0.172 4.172 11 C -0.003 4.003 12 C -0.492 4.492 13 H 0.030 0.970 14 C -0.009 4.009 15 N -0.963 5.963 16 Si 0.951 3.049 17 H -0.266 1.266 18 H -0.293 1.293 19 H -0.247 1.247 20 O -0.210 6.210 21 H 0.086 0.914 22 H 0.105 0.895 23 H 0.111 0.889 24 H 0.203 0.797 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.341 0.659 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.027 0.973 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.919 -8.026 -8.420 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.099 4.099 3 C -0.210 4.210 4 N -0.236 5.236 5 C -0.025 4.025 6 C 0.037 3.963 7 N -0.317 5.317 8 C -0.005 4.005 9 H 0.085 0.915 10 C -0.231 4.231 11 C -0.041 4.041 12 C -0.530 4.530 13 H 0.048 0.952 14 C -0.204 4.204 15 N -0.605 5.605 16 Si 0.775 3.225 17 H -0.191 1.191 18 H -0.219 1.219 19 H -0.171 1.171 20 O -0.097 6.097 21 H 0.105 0.895 22 H 0.123 0.877 23 H 0.129 0.871 24 H 0.220 0.780 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.159 0.841 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.934 -7.027 -8.257 19.273 hybrid contribution -0.341 -0.750 0.553 0.992 sum -16.274 -7.778 -7.704 19.614 Atomic orbital electron populations 1.20507 0.80261 1.05402 1.05667 1.24369 0.96785 0.83706 1.05080 1.23594 0.87215 1.02082 1.08133 1.70463 1.24898 1.10604 1.17613 1.26357 0.84452 0.90349 1.01348 1.20243 0.88110 0.95845 0.92150 1.60283 1.08098 1.51994 1.11293 1.21411 0.90420 0.90114 0.98577 0.91507 1.22452 1.02429 0.96043 1.02149 1.19588 0.95122 0.94689 0.94714 1.21358 1.31131 0.97498 1.03035 0.95207 1.26044 0.95926 0.96728 1.01664 1.70115 1.40121 1.19038 1.31261 0.85660 0.79663 0.79163 0.78037 1.19126 1.21907 1.17071 1.84369 1.17813 1.37470 1.70058 0.89541 0.87690 0.87077 0.78014 0.89783 0.88398 0.84057 0.91300 0.91123 0.92200 0.96590 0.95491 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.43 71.24 0.74 -0.04 16 2 C -0.05 -1.14 7.39 24.79 0.18 -0.96 16 3 C -0.07 -2.12 11.80 83.39 0.98 -1.13 16 4 N -0.51 -19.37 11.29 -303.82 -3.43 -22.80 16 5 C 0.18 6.26 7.86 88.34 0.69 6.95 16 6 C 0.17 5.32 6.11 85.56 0.52 5.84 16 7 N -0.68 -25.62 5.95 -495.54 -2.95 -28.57 16 8 C 0.10 3.83 2.53 44.92 0.11 3.95 16 9 H 0.07 2.56 7.80 -2.39 -0.02 2.54 16 10 C -0.17 -4.57 9.16 71.98 0.66 -3.91 16 11 C 0.00 -0.16 3.72 29.85 0.11 -0.04 16 12 C -0.49 -29.26 9.39 25.60 0.24 -29.02 16 13 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 14 C -0.01 -0.58 5.47 84.66 0.46 -0.11 16 15 N -0.96 -63.80 13.96 21.45 0.30 -63.50 16 16 Si 0.95 45.99 27.47 68.60 1.88 47.87 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 19 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 20 O -0.21 -6.24 10.77 -3.64 -0.04 -6.28 16 21 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.20 4.56 8.06 -2.91 -0.02 4.54 16 25 H 0.08 2.06 7.43 -2.39 -0.02 2.04 16 26 H 0.10 3.37 8.06 -2.39 -0.02 3.35 16 27 H 0.34 11.66 8.46 -89.70 -0.76 10.90 16 28 H 0.07 1.50 7.45 -2.39 -0.02 1.48 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 31 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 32 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 33 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -77.70 283.09 0.76 -76.94 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.28 Total: 14.82 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 4.72 Total: -18.48 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -6.08 Total: -114.87 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.04 Total: -6.28 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.87 kcal Total: -77.70 0.76 -76.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861155.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.441 kcal (2) G-P(sol) polarization free energy of solvation -77.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds