Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34337 * 126.44236 * 2 1 4 4 N 1.34480 * 107.66822 * 179.76306 * 3 2 1 5 5 C 1.30255 * 108.70117 * 0.41619 * 4 3 2 6 6 C 1.50693 * 125.62014 * 179.84242 * 5 4 3 7 7 N 1.46908 * 109.47347 * 89.69323 * 6 5 4 8 8 C 1.46894 * 110.99955 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47779 * 324.99869 * 8 7 6 10 10 C 1.52998 * 109.47018 * 85.00186 * 8 7 6 11 11 C 1.53002 * 109.47229 * 204.99899 * 8 7 6 12 12 C 1.50706 * 109.47153 * 64.99752 * 11 8 7 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 O 1.33970 * 108.75966 * 359.57906 * 5 4 3 21 21 H 1.08995 * 109.46672 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47437 * 300.00871 * 1 2 3 23 23 H 1.09001 * 109.46339 * 60.00976 * 1 2 3 24 24 H 1.07996 * 126.16244 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.47128 * 329.69434 * 6 5 4 26 26 H 1.09003 * 109.47028 * 209.69030 * 6 5 4 27 27 H 1.00904 * 110.99848 * 56.04922 * 7 6 5 28 28 H 1.08995 * 109.47190 * 60.00037 * 10 8 7 29 29 H 1.09007 * 109.46878 * 179.97438 * 10 8 7 30 30 H 1.09001 * 109.46923 * 299.99707 * 10 8 7 31 31 H 1.09004 * 109.47178 * 305.00542 * 11 8 7 32 32 H 1.08993 * 109.47411 * 185.00225 * 11 8 7 33 33 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5782 0.6479 0.0053 5 6 3.5766 -0.6547 -0.0005 6 6 4.8005 -1.5338 -0.0008 7 7 5.1985 -1.8197 1.3841 8 6 6.3908 -2.6769 1.4229 9 1 6.3596 -3.3807 0.5912 10 6 7.6462 -1.8097 1.3105 11 6 6.4210 -3.4491 2.7435 12 6 5.2484 -4.3942 2.7997 13 1 4.5517 -4.4397 1.9758 14 6 5.0651 -5.2005 3.9029 15 7 5.9166 -5.1489 4.9039 16 14 3.6121 -6.3724 3.9723 17 1 2.4527 -5.6868 4.5974 18 1 3.2526 -6.7972 2.5955 19 1 3.9759 -7.5649 4.7790 20 8 2.3075 -1.0839 -0.0002 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 1.9821 2.1112 0.0004 25 1 5.6147 -1.0229 -0.5147 26 1 4.5762 -2.4686 -0.5146 27 1 4.4378 -2.2353 1.9006 28 1 7.6775 -1.1060 2.1423 29 1 8.5310 -2.4458 1.3397 30 1 7.6247 -1.2596 0.3697 31 1 6.3625 -2.7478 3.5759 32 1 7.3489 -4.0169 2.8112 33 1 6.6713 -4.5406 4.8678 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695861158.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = 3.612619 kcal Electronic energy + Delta-G solvation = -15126.048175 eV Core-core repulsion = 12573.832669 eV Total energy + Delta-G solvation = -2552.215506 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.16766 -36.93406 -34.56949 -33.45333 -32.45304 -30.72607 -27.31801 -26.96740 -24.46532 -22.89297 -22.07975 -20.79742 -19.78424 -16.97416 -16.64141 -16.58483 -15.48245 -14.67437 -14.55636 -13.81742 -13.73899 -13.35906 -13.19202 -12.87438 -12.46408 -12.38977 -12.23186 -11.37550 -11.36040 -11.13135 -10.95574 -10.86288 -10.51954 -10.35304 -10.15742 -9.62760 -8.61838 -8.55484 -8.36944 -7.89494 -6.40064 -4.10335 1.53283 2.74699 2.83308 3.40909 3.43855 3.59237 4.18538 4.50877 4.78222 4.87811 5.03422 5.12953 5.26054 5.39993 5.45569 5.57646 5.64911 5.82796 5.97379 6.03975 6.14351 6.15369 6.37916 6.41542 6.71855 6.79425 7.18717 7.35163 7.74901 7.90143 8.00457 8.13051 8.39727 8.83685 9.62266 11.00696 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023328 B = 0.007472 C = 0.005921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.992862 B = 3746.275222 C = 4727.602090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.057 4.057 3 C -0.046 4.046 4 N -0.472 5.472 5 C 0.205 3.795 6 C 0.154 3.846 7 N -0.675 5.675 8 C 0.096 3.904 9 H 0.036 0.964 10 C -0.138 4.138 11 C 0.006 3.994 12 C -0.607 4.607 13 H 0.046 0.954 14 C 0.019 3.981 15 N -0.909 5.909 16 Si 1.068 2.932 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.284 1.284 20 O -0.200 6.200 21 H 0.077 0.923 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.180 0.820 25 H 0.107 0.893 26 H 0.055 0.945 27 H 0.360 0.640 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 8.851 -10.632 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C -0.185 4.185 4 N -0.201 5.201 5 C -0.002 4.002 6 C 0.024 3.976 7 N -0.311 5.311 8 C -0.013 4.013 9 H 0.054 0.946 10 C -0.196 4.196 11 C -0.031 4.031 12 C -0.645 4.645 13 H 0.064 0.936 14 C -0.186 4.186 15 N -0.545 5.545 16 Si 0.897 3.103 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.209 1.209 20 O -0.087 6.087 21 H 0.096 0.904 22 H 0.106 0.894 23 H 0.104 0.896 24 H 0.197 0.803 25 H 0.125 0.875 26 H 0.073 0.927 27 H 0.181 0.819 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.591 8.584 -9.612 14.957 hybrid contribution -0.326 0.050 -1.195 1.240 sum -7.917 8.635 -10.807 15.938 Atomic orbital electron populations 1.20236 0.84273 1.04270 1.03538 1.23434 0.95025 0.84815 1.07769 1.23048 0.88096 1.00156 1.07229 1.70438 1.22607 1.09319 1.17691 1.26324 0.83903 0.90350 0.99656 1.20334 0.88199 0.95053 0.94002 1.60625 1.09895 1.51448 1.09178 1.21514 0.88211 0.91524 1.00028 0.94599 1.21833 0.97135 0.99728 1.00925 1.19419 0.97433 0.94604 0.91647 1.22007 1.11757 1.24827 1.05922 0.93593 1.25788 1.01856 0.98458 0.92499 1.70742 1.14010 1.37497 1.32252 0.83549 0.74996 0.76284 0.75476 1.21430 1.21578 1.20931 1.84425 1.18102 1.36597 1.69598 0.90425 0.89449 0.89628 0.80278 0.87549 0.92749 0.81884 0.92452 0.93055 0.93997 0.96341 0.96605 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.43 36.01 0.38 -0.20 16 2 C -0.06 -0.78 7.39 -35.68 -0.26 -1.04 16 3 C -0.05 -0.66 11.80 -17.77 -0.21 -0.87 16 4 N -0.47 -8.19 11.29 -11.10 -0.13 -8.32 16 5 C 0.20 3.56 7.85 -12.95 -0.10 3.46 16 6 C 0.15 2.59 6.11 -4.98 -0.03 2.56 16 7 N -0.68 -13.45 6.30 -107.99 -0.68 -14.13 16 8 C 0.10 1.98 2.59 -67.72 -0.18 1.80 16 9 H 0.04 0.74 7.80 -51.93 -0.40 0.33 16 10 C -0.14 -2.45 9.41 37.16 0.35 -2.10 16 11 C 0.01 0.16 3.88 -27.88 -0.11 0.05 16 12 C -0.61 -16.77 8.12 -34.44 -0.28 -17.05 16 13 H 0.05 1.25 7.49 -52.49 -0.39 0.85 16 14 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 15 N -0.91 -27.67 13.65 55.43 0.76 -26.91 16 16 Si 1.07 25.22 29.90 -169.99 -5.08 20.14 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 O -0.20 -3.37 10.78 5.36 0.06 -3.31 16 21 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 25 H 0.11 1.63 7.44 -51.93 -0.39 1.24 16 26 H 0.05 0.87 8.05 -51.93 -0.42 0.45 16 27 H 0.36 7.92 7.20 -39.29 -0.28 7.64 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.65 7.45 -51.93 -0.39 0.27 16 31 H 0.02 0.50 8.01 -51.93 -0.42 0.08 16 32 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 33 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 LS Contribution 283.73 15.07 4.28 4.28 Total: -1.00 -31.83 283.73 -6.07 -37.90 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.73 Total: 3.32 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -0.54 Total: -12.96 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.05 Total: -49.36 kcal Atomic # 8 Polarization: -3.37 SS G_CDS: 0.06 Total: -3.31 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.83 -6.07 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861158.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.510 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds