Wall clock time and date at job start Mon Mar 30 2020 02:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34337 * 126.44236 * 2 1 4 4 N 1.34480 * 107.66822 * 179.76306 * 3 2 1 5 5 C 1.30255 * 108.70117 * 0.41619 * 4 3 2 6 6 C 1.50693 * 125.62014 * 179.84242 * 5 4 3 7 7 N 1.46908 * 109.47347 * 89.69323 * 6 5 4 8 8 C 1.46894 * 110.99955 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47779 * 324.99869 * 8 7 6 10 10 C 1.52998 * 109.47018 * 85.00186 * 8 7 6 11 11 C 1.53002 * 109.47229 * 204.99899 * 8 7 6 12 12 C 1.50706 * 109.47153 * 64.99752 * 11 8 7 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 8 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 O 1.33970 * 108.75966 * 359.57906 * 5 4 3 21 21 H 1.08995 * 109.46672 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47437 * 300.00871 * 1 2 3 23 23 H 1.09001 * 109.46339 * 60.00976 * 1 2 3 24 24 H 1.07996 * 126.16244 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.47128 * 329.69434 * 6 5 4 26 26 H 1.09003 * 109.47028 * 209.69030 * 6 5 4 27 27 H 1.00904 * 110.99848 * 56.04922 * 7 6 5 28 28 H 1.08995 * 109.47190 * 60.00037 * 10 8 7 29 29 H 1.09007 * 109.46878 * 179.97438 * 10 8 7 30 30 H 1.09001 * 109.46923 * 299.99707 * 10 8 7 31 31 H 1.09004 * 109.47178 * 305.00542 * 11 8 7 32 32 H 1.08993 * 109.47411 * 185.00225 * 11 8 7 33 33 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5782 0.6479 0.0053 5 6 3.5766 -0.6547 -0.0005 6 6 4.8005 -1.5338 -0.0008 7 7 5.1985 -1.8197 1.3841 8 6 6.3908 -2.6769 1.4229 9 1 6.3596 -3.3807 0.5912 10 6 7.6462 -1.8097 1.3105 11 6 6.4210 -3.4491 2.7435 12 6 5.2484 -4.3942 2.7997 13 1 4.5517 -4.4397 1.9758 14 6 5.0651 -5.2005 3.9029 15 7 5.9166 -5.1489 4.9039 16 14 3.6121 -6.3724 3.9723 17 1 2.4527 -5.6868 4.5974 18 1 3.2526 -6.7972 2.5955 19 1 3.9759 -7.5649 4.7790 20 8 2.3075 -1.0839 -0.0002 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 1.9821 2.1112 0.0004 25 1 5.6147 -1.0229 -0.5147 26 1 4.5762 -2.4686 -0.5146 27 1 4.4378 -2.2353 1.9006 28 1 7.6775 -1.1060 2.1423 29 1 8.5310 -2.4458 1.3397 30 1 7.6247 -1.2596 0.3697 31 1 6.3625 -2.7478 3.5759 32 1 7.3489 -4.0169 2.8112 33 1 6.6713 -4.5406 4.8678 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695861158.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:38 Heat of formation + Delta-G solvation = -20.333741 kcal Electronic energy + Delta-G solvation = -15127.086567 eV Core-core repulsion = 12573.832669 eV Total energy + Delta-G solvation = -2553.253898 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.33917 -38.57081 -35.80903 -35.30172 -33.77993 -32.11451 -28.98112 -28.39708 -25.76000 -24.89070 -23.24994 -21.99855 -21.47004 -18.95447 -17.97013 -17.84212 -17.00613 -16.21492 -15.68092 -15.59735 -15.26650 -14.58985 -14.44540 -14.02125 -13.86956 -13.59247 -13.32397 -13.23750 -13.01406 -12.67154 -12.57039 -12.42521 -12.28702 -11.97173 -11.55606 -11.46082 -10.66891 -10.56757 -9.69541 -9.42397 -8.68488 -6.39044 0.38193 1.50339 1.58767 1.60936 1.69931 1.75857 2.54467 3.01631 3.13789 3.40848 3.83032 4.04002 4.11328 4.18322 4.32054 4.46700 4.50425 4.57611 4.68552 4.69306 4.89403 5.02854 5.06358 5.14815 5.18306 5.23231 5.32188 5.40968 5.93764 6.10819 6.17067 6.29156 6.57339 6.73266 7.42284 8.72413 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.023328 B = 0.007472 C = 0.005921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.992862 B = 3746.275222 C = 4727.602090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.052 4.052 3 C -0.064 4.064 4 N -0.491 5.491 5 C 0.178 3.822 6 C 0.159 3.841 7 N -0.682 5.682 8 C 0.103 3.897 9 H 0.039 0.961 10 C -0.131 4.131 11 C 0.010 3.990 12 C -0.611 4.611 13 H 0.049 0.951 14 C -0.036 4.036 15 N -0.937 5.937 16 Si 1.116 2.884 17 H -0.275 1.275 18 H -0.270 1.270 19 H -0.283 1.283 20 O -0.219 6.219 21 H 0.078 0.922 22 H 0.107 0.893 23 H 0.114 0.886 24 H 0.212 0.788 25 H 0.122 0.878 26 H 0.063 0.937 27 H 0.344 0.656 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.067 0.933 31 H -0.008 1.008 32 H -0.001 1.001 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 9.428 -12.019 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 C -0.202 4.202 4 N -0.221 5.221 5 C -0.028 4.028 6 C 0.030 3.970 7 N -0.316 5.316 8 C -0.006 4.006 9 H 0.057 0.943 10 C -0.188 4.188 11 C -0.028 4.028 12 C -0.649 4.649 13 H 0.068 0.932 14 C -0.234 4.234 15 N -0.574 5.574 16 Si 0.938 3.062 17 H -0.200 1.200 18 H -0.194 1.194 19 H -0.209 1.209 20 O -0.106 6.106 21 H 0.097 0.903 22 H 0.125 0.875 23 H 0.133 0.867 24 H 0.229 0.771 25 H 0.140 0.860 26 H 0.081 0.919 27 H 0.163 0.837 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.011 0.989 32 H 0.017 0.983 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.326 9.182 -11.028 17.114 hybrid contribution 0.161 -0.036 -0.795 0.812 sum -9.165 9.146 -11.823 17.534 Atomic orbital electron populations 1.20522 0.80685 1.05123 1.05844 1.24435 0.96878 0.83875 1.05288 1.23625 0.87074 1.01911 1.07601 1.70391 1.24565 1.09466 1.17705 1.26264 0.84281 0.90525 1.01779 1.20332 0.88945 0.95663 0.92100 1.60640 1.09057 1.50657 1.11260 1.21371 0.90051 0.91973 0.97179 0.94304 1.21756 0.95823 0.99346 1.01911 1.19326 0.95892 0.94061 0.93486 1.22359 1.12163 1.24612 1.05738 0.93239 1.27301 1.03750 1.00133 0.92236 1.70877 1.14694 1.38341 1.33530 0.82943 0.72276 0.74404 0.76611 1.20048 1.19446 1.20879 1.84421 1.18328 1.38037 1.69820 0.90296 0.87489 0.86724 0.77111 0.86033 0.91928 0.83693 0.93415 0.92163 0.91361 0.98945 0.98276 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.43 71.24 0.74 -0.18 16 2 C -0.05 -1.31 7.39 24.79 0.18 -1.13 16 3 C -0.06 -1.69 11.80 83.40 0.98 -0.70 16 4 N -0.49 -16.55 11.29 -303.83 -3.43 -19.98 16 5 C 0.18 6.06 7.85 88.34 0.69 6.75 16 6 C 0.16 5.21 6.11 85.55 0.52 5.73 16 7 N -0.68 -27.06 6.30 -495.58 -3.12 -30.18 16 8 C 0.10 4.23 2.59 44.92 0.12 4.35 16 9 H 0.04 1.57 7.80 -2.39 -0.02 1.55 16 10 C -0.13 -4.48 9.41 71.98 0.68 -3.81 16 11 C 0.01 0.50 3.88 29.85 0.12 0.62 16 12 C -0.61 -34.08 8.12 25.60 0.21 -33.88 16 13 H 0.05 2.68 7.49 -2.91 -0.02 2.66 16 14 C -0.04 -2.09 5.46 84.65 0.46 -1.63 16 15 N -0.94 -58.23 13.65 21.45 0.29 -57.94 16 16 Si 1.12 50.35 29.90 68.60 2.05 52.40 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 O -0.22 -7.16 10.78 -3.73 -0.04 -7.20 16 21 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.21 3.85 8.06 -2.91 -0.02 3.83 16 25 H 0.12 3.54 7.44 -2.39 -0.02 3.52 16 26 H 0.06 1.93 8.05 -2.39 -0.02 1.91 16 27 H 0.34 15.33 7.20 -89.69 -0.65 14.69 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.07 1.98 7.45 -2.39 -0.02 1.97 16 31 H -0.01 -0.44 8.01 -2.39 -0.02 -0.46 16 32 H 0.00 -0.05 8.00 -2.39 -0.02 -0.07 16 33 H 0.26 16.17 7.22 -92.71 -0.67 15.50 16 Total: -1.00 -69.40 283.73 1.01 -68.39 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.55 Total: 18.37 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 4.71 Total: -23.87 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -6.26 Total: -108.10 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.04 Total: -7.20 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.40 kcal Total: -69.40 1.01 -68.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695861158.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.059 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds