Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46788 * 2 1 4 4 C 1.36235 * 116.99871 * 179.97438 * 3 2 1 5 5 C 1.40115 * 126.04897 * 0.02562 * 4 3 2 6 6 N 1.30866 * 108.35590 * 179.97438 * 5 4 3 7 7 N 1.40087 * 108.32280 * 0.02562 * 6 5 4 8 8 C 1.46494 * 126.07739 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47643 * 334.97145 * 8 7 6 10 10 C 1.53008 * 109.47168 * 214.97404 * 8 7 6 11 11 C 1.53001 * 109.47588 * 94.97376 * 8 7 6 12 12 C 1.50693 * 109.47291 * 184.99695 * 11 8 7 13 13 H 1.07996 * 120.00348 * 0.02562 * 12 11 8 14 14 C 1.37879 * 119.99714 * 179.97438 * 12 11 8 15 15 N 1.31520 * 119.99916 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00177 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.46891 * 89.99841 * 16 14 12 18 18 H 1.48498 * 109.47377 * 209.99621 * 16 14 12 19 19 H 1.48498 * 109.47161 * 329.99790 * 16 14 12 20 20 C 1.35582 * 126.05053 * 179.71681 * 4 3 2 21 21 H 1.09006 * 109.47129 * 300.00251 * 1 2 3 22 22 H 1.09000 * 109.46868 * 60.00006 * 1 2 3 23 23 H 1.09003 * 109.47074 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47311 * 239.99956 * 2 1 3 25 25 H 1.08995 * 109.46898 * 119.99517 * 2 1 3 26 26 H 1.07998 * 125.82310 * 359.97438 * 5 4 3 27 27 H 1.09000 * 109.46627 * 300.00363 * 10 8 7 28 28 H 1.08996 * 109.47004 * 59.99825 * 10 8 7 29 29 H 1.08994 * 109.47069 * 180.02562 * 10 8 7 30 30 H 1.09002 * 109.46896 * 305.00302 * 11 8 7 31 31 H 1.09005 * 109.46838 * 64.99519 * 11 8 7 32 32 H 0.96997 * 119.99771 * 180.02562 * 15 14 12 33 33 H 1.07998 * 126.21628 * 359.95930 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3569 1.5258 0.0005 5 6 4.3228 0.5108 0.0006 6 7 5.5067 1.0685 0.0006 7 7 5.3383 2.4592 0.0012 8 6 6.4101 3.4579 0.0009 9 1 7.3110 3.0243 0.4350 10 6 5.9779 4.6702 0.8285 11 6 6.6972 3.8977 -1.4362 12 6 7.8799 4.8314 -1.4490 13 1 8.3774 5.0855 -0.5247 14 6 8.3275 5.3606 -2.6409 15 7 9.3601 6.1751 -2.6522 16 14 7.4675 4.9205 -4.2397 17 1 6.3793 5.8966 -4.5014 18 1 8.4465 4.9598 -5.3556 19 1 6.8929 3.5553 -4.1333 20 6 4.0042 2.7171 -0.0048 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 4.1242 -0.5507 0.0006 27 1 5.0770 5.1038 0.3944 28 1 5.7734 4.3569 1.8522 29 1 6.7751 5.4134 0.8278 30 1 6.9187 3.0222 -2.0466 31 1 5.8246 4.4109 -1.8402 32 1 9.6747 6.5476 -3.4907 33 1 3.5433 3.6938 -0.0108 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695869772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = 28.792113 kcal Electronic energy + Delta-G solvation = -15115.464954 eV Core-core repulsion = 12564.341313 eV Total energy + Delta-G solvation = -2551.123641 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.93775 -38.02974 -35.32965 -32.47097 -31.73836 -29.91372 -28.44060 -27.57627 -23.88245 -23.41189 -21.57630 -20.46019 -19.29892 -17.86705 -16.80838 -16.00160 -15.22420 -14.79347 -14.48820 -14.26625 -13.93792 -13.46651 -12.87747 -12.80801 -12.49090 -12.29296 -12.01386 -11.70876 -11.50012 -11.26919 -10.97590 -10.80798 -10.40812 -10.25046 -10.13534 -9.92512 -9.37449 -8.94750 -8.65010 -7.52439 -6.15971 -4.16435 2.25104 2.83019 3.08133 3.25128 3.33428 3.39004 3.57643 4.36523 4.88802 4.92523 5.03144 5.14509 5.18607 5.24692 5.45262 5.52577 5.64385 5.71375 5.78570 5.88198 5.94798 6.08651 6.30385 6.42285 6.53316 6.68597 6.98691 7.12787 7.39056 7.64414 7.71689 8.06334 8.35373 8.84752 9.44938 10.96278 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039799 B = 0.006127 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.373981 B = 4568.666377 C = 4880.143754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.309 6.309 4 C -0.049 4.049 5 C -0.022 4.022 6 N -0.273 5.273 7 N -0.340 5.340 8 C 0.167 3.833 9 H 0.100 0.900 10 C -0.150 4.150 11 C -0.018 4.018 12 C -0.523 4.523 13 H 0.079 0.921 14 C 0.074 3.926 15 N -0.896 5.896 16 Si 0.876 3.124 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.030 3.970 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.176 0.824 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.025 0.975 31 H 0.019 0.981 32 H 0.265 0.735 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.499 -9.494 5.476 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.223 6.223 4 C -0.103 4.103 5 C -0.207 4.207 6 N -0.097 5.097 7 N -0.127 5.127 8 C 0.068 3.932 9 H 0.118 0.882 10 C -0.208 4.208 11 C -0.057 4.057 12 C -0.561 4.561 13 H 0.097 0.903 14 C -0.128 4.128 15 N -0.534 5.534 16 Si 0.703 3.297 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.116 4.116 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.193 0.807 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.197 -9.347 5.366 17.039 hybrid contribution -1.187 -0.287 -1.022 1.592 sum -14.384 -9.635 4.344 17.850 Atomic orbital electron populations 1.21749 0.93349 1.02378 1.03287 1.22560 0.95244 0.82747 1.00786 1.85947 1.16956 1.27634 1.91723 1.18545 0.83526 0.93043 1.15204 1.23822 0.90179 0.99695 1.06989 1.77257 1.21991 0.88463 1.22033 1.49211 1.04868 1.04406 1.54193 1.21612 0.86349 0.84974 1.00250 0.88237 1.22093 1.03317 0.97574 0.97826 1.20001 0.97937 0.97334 0.90417 1.20882 1.12729 1.26836 0.95637 0.90314 1.24925 0.94578 0.94365 0.98957 1.69887 1.24929 1.31411 1.27207 0.86830 0.79674 0.79684 0.83493 1.20104 1.21127 1.19077 1.21492 0.84512 0.98398 1.07231 0.91742 0.91700 0.90787 0.92783 0.92815 0.80707 0.92334 0.93358 0.88633 0.95636 0.96299 0.92466 0.80749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.85 16 2 C 0.06 0.66 5.80 37.16 0.22 0.88 16 3 O -0.31 -4.57 10.23 -20.49 -0.21 -4.78 16 4 C -0.05 -0.81 6.96 -39.83 -0.28 -1.08 16 5 C -0.02 -0.36 11.07 -17.26 -0.19 -0.55 16 6 N -0.27 -5.27 12.57 30.68 0.39 -4.89 16 7 N -0.34 -6.52 3.55 -54.55 -0.19 -6.71 16 8 C 0.17 3.33 3.35 -67.93 -0.23 3.10 16 9 H 0.10 2.03 8.14 -51.93 -0.42 1.60 16 10 C -0.15 -2.55 8.66 37.16 0.32 -2.23 16 11 C -0.02 -0.44 3.84 -27.89 -0.11 -0.54 16 12 C -0.52 -14.12 8.96 -34.44 -0.31 -14.43 16 13 H 0.08 2.22 7.30 -52.49 -0.38 1.84 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 16 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 20 C 0.03 0.52 10.65 -16.71 -0.18 0.34 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.54 8.10 -51.93 -0.42 0.12 16 25 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.18 2.19 7.69 -52.49 -0.40 1.79 16 27 H 0.06 0.93 7.18 -51.93 -0.37 0.56 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 1.73 6.95 -51.93 -0.36 1.37 16 30 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 31 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 33 H 0.18 2.61 7.29 -52.49 -0.38 2.23 16 LS Contribution 279.97 15.07 4.22 4.22 Total: -1.00 -31.03 279.97 -4.95 -35.98 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.79 Total: -1.38 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.47 Total: -13.37 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.97 Total: -37.57 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.21 Total: -4.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.03 -4.95 -35.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695869772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.770 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds