Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46788 * 2 1 4 4 C 1.36235 * 116.99871 * 179.97438 * 3 2 1 5 5 C 1.40115 * 126.04897 * 0.02562 * 4 3 2 6 6 N 1.30866 * 108.35590 * 179.97438 * 5 4 3 7 7 N 1.40087 * 108.32280 * 0.02562 * 6 5 4 8 8 C 1.46494 * 126.07739 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47643 * 334.97145 * 8 7 6 10 10 C 1.53008 * 109.47168 * 214.97404 * 8 7 6 11 11 C 1.53001 * 109.47588 * 94.97376 * 8 7 6 12 12 C 1.50693 * 109.47291 * 184.99695 * 11 8 7 13 13 H 1.07996 * 120.00348 * 0.02562 * 12 11 8 14 14 C 1.37879 * 119.99714 * 179.97438 * 12 11 8 15 15 N 1.31520 * 119.99916 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00177 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.46891 * 89.99841 * 16 14 12 18 18 H 1.48498 * 109.47377 * 209.99621 * 16 14 12 19 19 H 1.48498 * 109.47161 * 329.99790 * 16 14 12 20 20 C 1.35582 * 126.05053 * 179.71681 * 4 3 2 21 21 H 1.09006 * 109.47129 * 300.00251 * 1 2 3 22 22 H 1.09000 * 109.46868 * 60.00006 * 1 2 3 23 23 H 1.09003 * 109.47074 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47311 * 239.99956 * 2 1 3 25 25 H 1.08995 * 109.46898 * 119.99517 * 2 1 3 26 26 H 1.07998 * 125.82310 * 359.97438 * 5 4 3 27 27 H 1.09000 * 109.46627 * 300.00363 * 10 8 7 28 28 H 1.08996 * 109.47004 * 59.99825 * 10 8 7 29 29 H 1.08994 * 109.47069 * 180.02562 * 10 8 7 30 30 H 1.09002 * 109.46896 * 305.00302 * 11 8 7 31 31 H 1.09005 * 109.46838 * 64.99519 * 11 8 7 32 32 H 0.96997 * 119.99771 * 180.02562 * 15 14 12 33 33 H 1.07998 * 126.21628 * 359.95930 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3569 1.5258 0.0005 5 6 4.3228 0.5108 0.0006 6 7 5.5067 1.0685 0.0006 7 7 5.3383 2.4592 0.0012 8 6 6.4101 3.4579 0.0009 9 1 7.3110 3.0243 0.4350 10 6 5.9779 4.6702 0.8285 11 6 6.6972 3.8977 -1.4362 12 6 7.8799 4.8314 -1.4490 13 1 8.3774 5.0855 -0.5247 14 6 8.3275 5.3606 -2.6409 15 7 9.3601 6.1751 -2.6522 16 14 7.4675 4.9205 -4.2397 17 1 6.3793 5.8966 -4.5014 18 1 8.4465 4.9598 -5.3556 19 1 6.8929 3.5553 -4.1333 20 6 4.0042 2.7171 -0.0048 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 4.1242 -0.5507 0.0006 27 1 5.0770 5.1038 0.3944 28 1 5.7734 4.3569 1.8522 29 1 6.7751 5.4134 0.8278 30 1 6.9187 3.0222 -2.0466 31 1 5.8246 4.4109 -1.8402 32 1 9.6747 6.5476 -3.4907 33 1 3.5433 3.6938 -0.0108 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695869772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = 8.827571 kcal Electronic energy + Delta-G solvation = -15116.330681 eV Core-core repulsion = 12564.341313 eV Total energy + Delta-G solvation = -2551.989368 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.25047 -39.14920 -36.94871 -34.49403 -32.58540 -31.46199 -29.78381 -29.19073 -25.55098 -24.35131 -23.18366 -21.67336 -20.75247 -19.37608 -18.59942 -17.02920 -16.58753 -16.49191 -15.69043 -15.66338 -15.49544 -14.97973 -14.67221 -13.92266 -13.66843 -13.38470 -13.20768 -13.18441 -13.00520 -12.77711 -12.44057 -12.12232 -11.98010 -11.82856 -11.57126 -11.51480 -11.43920 -10.81274 -10.38080 -8.79897 -8.33372 -6.37510 0.90715 1.30350 1.33900 1.43885 1.47552 1.83267 2.30808 2.52106 3.01470 3.75505 3.84776 4.07531 4.13450 4.17730 4.28102 4.35240 4.47626 4.56750 4.75856 4.82400 4.85533 4.92013 5.03757 5.11847 5.18226 5.25834 5.30838 5.45476 5.50614 6.06466 6.21549 6.58198 6.68391 6.73783 7.26887 8.81890 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039799 B = 0.006127 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.373981 B = 4568.666377 C = 4880.143754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.321 6.321 4 C -0.046 4.046 5 C -0.010 4.010 6 N -0.313 5.313 7 N -0.357 5.357 8 C 0.176 3.824 9 H 0.086 0.914 10 C -0.140 4.140 11 C -0.010 4.010 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.019 3.981 15 N -0.940 5.940 16 Si 0.937 3.063 17 H -0.262 1.262 18 H -0.282 1.282 19 H -0.265 1.265 20 C 0.018 3.982 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.210 0.790 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.007 0.993 31 H 0.025 0.975 32 H 0.268 0.732 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.859 -10.742 5.372 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 O -0.235 6.235 4 C -0.101 4.101 5 C -0.195 4.195 6 N -0.137 5.137 7 N -0.144 5.144 8 C 0.075 3.925 9 H 0.104 0.896 10 C -0.198 4.198 11 C -0.049 4.049 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.179 4.179 15 N -0.580 5.580 16 Si 0.762 3.238 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.190 1.190 20 C -0.127 4.127 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.118 0.882 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.227 0.773 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.025 0.975 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.583 -10.606 5.272 19.573 hybrid contribution -0.527 -0.001 -0.919 1.059 sum -16.110 -10.607 4.353 19.773 Atomic orbital electron populations 1.21779 0.91564 1.04006 1.03015 1.22930 0.96700 0.81031 1.01774 1.85962 1.15705 1.30308 1.91525 1.18641 0.84453 0.92793 1.14168 1.24401 0.89203 1.01281 1.04629 1.77220 1.23820 0.88782 1.23854 1.48982 1.05181 1.04244 1.56010 1.21280 0.86867 0.86255 0.98060 0.89593 1.21993 1.03152 0.95928 0.98775 1.19841 0.96486 0.95646 0.92910 1.21140 1.13387 1.26750 0.94709 0.92720 1.25733 0.95306 0.94445 1.02443 1.70009 1.26713 1.33039 1.28213 0.85858 0.78925 0.79540 0.79513 1.18693 1.20713 1.18960 1.21909 0.83879 0.99799 1.07088 0.91845 0.92152 0.88205 0.92010 0.91534 0.77329 0.90974 0.91103 0.90220 0.97494 0.95719 0.92271 0.78915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.05 0.92 5.80 71.98 0.42 1.34 16 3 O -0.32 -8.65 10.23 -96.23 -0.98 -9.64 16 4 C -0.05 -1.41 6.96 22.11 0.15 -1.26 16 5 C -0.01 -0.30 11.07 85.29 0.94 0.64 16 6 N -0.31 -11.72 12.57 -56.85 -0.71 -12.44 16 7 N -0.36 -13.32 3.55 -326.51 -1.16 -14.48 16 8 C 0.18 6.96 3.35 45.00 0.15 7.11 16 9 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 10 C -0.14 -4.65 8.66 71.98 0.62 -4.03 16 11 C -0.01 -0.49 3.84 29.85 0.11 -0.37 16 12 C -0.52 -28.66 8.96 25.60 0.23 -28.43 16 13 H 0.05 3.20 7.30 -2.91 -0.02 3.17 16 14 C 0.02 1.09 5.47 84.65 0.46 1.55 16 15 N -0.94 -57.06 13.96 21.45 0.30 -56.76 16 16 Si 0.94 44.40 27.47 68.60 1.88 46.29 16 17 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.27 -12.41 6.54 99.48 0.65 -11.76 16 20 C 0.02 0.60 10.65 83.45 0.89 1.49 16 21 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 24 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 25 H 0.07 1.05 8.10 -2.39 -0.02 1.03 16 26 H 0.21 4.53 7.69 -2.91 -0.02 4.51 16 27 H 0.07 2.17 7.18 -2.39 -0.02 2.15 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 2.89 6.95 -2.39 -0.02 2.88 16 30 H 0.01 0.34 7.20 -2.39 -0.02 0.32 16 31 H 0.02 1.12 7.57 -2.38 -0.02 1.11 16 32 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.19 5.33 7.29 -2.91 -0.02 5.31 16 Total: -1.00 -66.47 279.97 5.08 -61.40 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.02 Total: 8.82 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.73 Total: -23.19 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -1.57 Total: -83.68 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.98 Total: -9.64 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.29 kcal Total: -66.47 5.08 -61.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695869772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.225 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds