Wall clock time and date at job start Mon Mar 30 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47213 * 2 1 4 4 C 1.36229 * 116.99927 * 179.97438 * 3 2 1 5 5 C 1.40115 * 126.05249 * 0.02624 * 4 3 2 6 6 N 1.30873 * 108.35534 * 179.97438 * 5 4 3 7 7 N 1.40078 * 108.32279 * 0.02562 * 6 5 4 8 8 C 1.46501 * 126.07794 * 179.97438 * 7 6 5 9 9 H 1.08994 * 109.47095 * 25.01750 * 8 7 6 10 10 C 1.52999 * 109.47154 * 145.02301 * 8 7 6 11 11 C 1.53001 * 109.46706 * 265.02331 * 8 7 6 12 12 C 1.50702 * 109.46996 * 175.00030 * 11 8 7 13 13 H 1.07997 * 120.00204 * 359.97438 * 12 11 8 14 14 C 1.37878 * 119.99981 * 180.02562 * 12 11 8 15 15 N 1.31516 * 120.00053 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00014 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47623 * 89.99547 * 16 14 12 18 18 H 1.48499 * 109.46862 * 209.99838 * 16 14 12 19 19 H 1.48510 * 109.46931 * 329.99449 * 16 14 12 20 20 C 1.35585 * 126.04933 * 180.02562 * 4 3 2 21 21 H 1.09000 * 109.47220 * 300.00194 * 1 2 3 22 22 H 1.09004 * 109.47112 * 60.00300 * 1 2 3 23 23 H 1.09003 * 109.46917 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47220 * 239.99806 * 2 1 3 25 25 H 1.09004 * 109.47112 * 119.99700 * 2 1 3 26 26 H 1.07997 * 125.82429 * 359.97438 * 5 4 3 27 27 H 1.09003 * 109.46945 * 180.02562 * 10 8 7 28 28 H 1.09002 * 109.46885 * 299.99371 * 10 8 7 29 29 H 1.08998 * 109.47198 * 60.00061 * 10 8 7 30 30 H 1.09003 * 109.47130 * 294.99874 * 11 8 7 31 31 H 1.09000 * 109.47565 * 54.99658 * 11 8 7 32 32 H 0.96999 * 120.00026 * 180.02562 * 15 14 12 33 33 H 1.08003 * 126.20967 * 359.75222 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3569 1.5257 0.0005 5 6 4.3228 0.5107 0.0006 6 7 5.5067 1.0684 0.0006 7 7 5.3384 2.4591 0.0012 8 6 6.4102 3.4578 0.0020 9 1 7.3110 3.0244 -0.4325 10 6 5.9778 4.6706 -0.8245 11 6 6.6975 3.8963 1.4394 12 6 7.8803 4.8301 1.4527 13 1 8.3776 5.0850 0.5286 14 6 8.3282 5.3583 2.6450 15 7 7.7229 5.0476 3.7705 16 14 9.7939 6.5163 2.6615 17 1 9.3212 7.9154 2.5055 18 1 10.5183 6.3794 3.9506 19 1 10.7074 6.1746 1.5416 20 6 4.0043 2.7170 0.0011 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.1242 -0.5508 0.0006 27 1 6.7755 5.4135 -0.8243 28 1 5.7732 4.3581 -1.8485 29 1 5.0770 5.1040 -0.3899 30 1 5.8250 4.4093 1.8440 31 1 6.9191 3.0204 2.0491 32 1 8.0378 5.4194 4.6092 33 1 3.5433 3.6937 -0.0025 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695869777.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:15 Heat of formation + Delta-G solvation = 25.152964 kcal Electronic energy + Delta-G solvation = -15050.241119 eV Core-core repulsion = 12498.959673 eV Total energy + Delta-G solvation = -2551.281446 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.81683 -37.92668 -35.19111 -32.48574 -31.65627 -29.67095 -28.27649 -27.09165 -23.97511 -23.36360 -21.75933 -20.35707 -19.25094 -17.67556 -16.43330 -15.90248 -15.15410 -14.75185 -14.39506 -14.18003 -14.04741 -13.26912 -12.74532 -12.68231 -12.24086 -12.17849 -11.93049 -11.63207 -11.38071 -11.01556 -10.95392 -10.75442 -10.52677 -10.30592 -10.03336 -9.86319 -9.32102 -8.78869 -8.47234 -7.40200 -6.11082 -4.16047 2.37684 2.94526 3.19358 3.26351 3.33399 3.36012 3.67553 4.37597 4.96070 5.00992 5.13551 5.23742 5.25473 5.33584 5.54855 5.60661 5.74741 5.78488 5.87953 5.95959 6.03594 6.19965 6.39469 6.59891 6.62110 6.75514 7.40042 7.51932 7.60457 7.79695 7.88203 8.17893 8.21557 8.88769 9.48520 11.00135 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.054538 B = 0.005279 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.276352 B = 5302.532897 C = 5422.699532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.309 6.309 4 C -0.051 4.051 5 C -0.023 4.023 6 N -0.274 5.274 7 N -0.335 5.335 8 C 0.157 3.843 9 H 0.093 0.907 10 C -0.149 4.149 11 C 0.018 3.982 12 C -0.524 4.524 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.032 3.968 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.175 0.825 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 -6.576 -7.996 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.223 6.223 4 C -0.105 4.105 5 C -0.208 4.208 6 N -0.099 5.099 7 N -0.122 5.122 8 C 0.058 3.942 9 H 0.111 0.889 10 C -0.207 4.207 11 C -0.020 4.020 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.114 4.114 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.192 0.808 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.179 -6.514 -7.807 13.698 hybrid contribution -0.064 0.473 0.263 0.545 sum -9.244 -6.041 -7.545 13.374 Atomic orbital electron populations 1.21746 0.93417 1.02319 1.03264 1.22549 0.95184 0.82840 1.00752 1.85940 1.17032 1.27535 1.91770 1.18527 0.83458 0.93059 1.15447 1.23788 0.90212 0.99618 1.07184 1.77238 1.21986 0.88542 1.22135 1.49185 1.04854 1.04343 1.53811 1.21861 0.86001 0.84713 1.01618 0.88873 1.22077 1.03167 0.97698 0.97738 1.19514 0.97629 0.97061 0.87765 1.21025 1.13923 1.27803 0.93478 0.92068 1.25003 0.97030 0.96605 0.95507 1.69975 1.40732 1.43962 0.98123 0.86524 0.82488 0.81011 0.77590 1.20527 1.21142 1.19710 1.21467 0.84538 0.98318 1.07120 0.91678 0.91800 0.90840 0.92903 0.92772 0.80817 0.89151 0.93629 0.92260 0.95793 0.95627 0.92747 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.71 5.80 37.16 0.22 0.93 16 3 O -0.31 -4.83 10.23 -20.47 -0.21 -5.04 16 4 C -0.05 -0.88 6.96 -39.83 -0.28 -1.16 16 5 C -0.02 -0.40 11.07 -17.26 -0.19 -0.60 16 6 N -0.27 -5.57 12.57 30.68 0.39 -5.19 16 7 N -0.34 -6.78 3.55 -54.56 -0.19 -6.97 16 8 C 0.16 3.26 3.35 -67.93 -0.23 3.04 16 9 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 10 C -0.15 -2.58 8.65 37.16 0.32 -2.26 16 11 C 0.02 0.47 4.77 -27.88 -0.13 0.33 16 12 C -0.52 -14.04 8.41 -34.44 -0.29 -14.33 16 13 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 16 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.03 0.59 10.65 -16.71 -0.18 0.41 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.54 8.10 -51.93 -0.42 0.12 16 25 H 0.05 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.17 2.33 7.69 -52.49 -0.40 1.92 16 27 H 0.09 1.59 6.95 -51.93 -0.36 1.23 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.99 7.17 -51.93 -0.37 0.61 16 30 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.17 2.80 7.28 -52.48 -0.38 2.42 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -30.99 283.56 -5.33 -36.32 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.82 Total: -0.79 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -0.47 Total: -12.99 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.93 Total: -37.72 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.21 Total: -5.04 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.99 -5.33 -36.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695869777.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.474 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds