Wall clock time and date at job start Mon Mar 30 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47213 * 2 1 4 4 C 1.36229 * 116.99927 * 179.97438 * 3 2 1 5 5 C 1.40115 * 126.05249 * 0.02624 * 4 3 2 6 6 N 1.30873 * 108.35534 * 179.97438 * 5 4 3 7 7 N 1.40078 * 108.32279 * 0.02562 * 6 5 4 8 8 C 1.46501 * 126.07794 * 179.97438 * 7 6 5 9 9 H 1.08994 * 109.47095 * 25.01750 * 8 7 6 10 10 C 1.52999 * 109.47154 * 145.02301 * 8 7 6 11 11 C 1.53001 * 109.46706 * 265.02331 * 8 7 6 12 12 C 1.50702 * 109.46996 * 175.00030 * 11 8 7 13 13 H 1.07997 * 120.00204 * 359.97438 * 12 11 8 14 14 C 1.37878 * 119.99981 * 180.02562 * 12 11 8 15 15 N 1.31516 * 120.00053 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00014 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47623 * 89.99547 * 16 14 12 18 18 H 1.48499 * 109.46862 * 209.99838 * 16 14 12 19 19 H 1.48510 * 109.46931 * 329.99449 * 16 14 12 20 20 C 1.35585 * 126.04933 * 180.02562 * 4 3 2 21 21 H 1.09000 * 109.47220 * 300.00194 * 1 2 3 22 22 H 1.09004 * 109.47112 * 60.00300 * 1 2 3 23 23 H 1.09003 * 109.46917 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47220 * 239.99806 * 2 1 3 25 25 H 1.09004 * 109.47112 * 119.99700 * 2 1 3 26 26 H 1.07997 * 125.82429 * 359.97438 * 5 4 3 27 27 H 1.09003 * 109.46945 * 180.02562 * 10 8 7 28 28 H 1.09002 * 109.46885 * 299.99371 * 10 8 7 29 29 H 1.08998 * 109.47198 * 60.00061 * 10 8 7 30 30 H 1.09003 * 109.47130 * 294.99874 * 11 8 7 31 31 H 1.09000 * 109.47565 * 54.99658 * 11 8 7 32 32 H 0.96999 * 120.00026 * 180.02562 * 15 14 12 33 33 H 1.08003 * 126.20967 * 359.75222 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3569 1.5257 0.0005 5 6 4.3228 0.5107 0.0006 6 7 5.5067 1.0684 0.0006 7 7 5.3384 2.4591 0.0012 8 6 6.4102 3.4578 0.0020 9 1 7.3110 3.0244 -0.4325 10 6 5.9778 4.6706 -0.8245 11 6 6.6975 3.8963 1.4394 12 6 7.8803 4.8301 1.4527 13 1 8.3776 5.0850 0.5286 14 6 8.3282 5.3583 2.6450 15 7 7.7229 5.0476 3.7705 16 14 9.7939 6.5163 2.6615 17 1 9.3212 7.9154 2.5055 18 1 10.5183 6.3794 3.9506 19 1 10.7074 6.1746 1.5416 20 6 4.0043 2.7170 0.0011 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.1242 -0.5508 0.0006 27 1 6.7755 5.4135 -0.8243 28 1 5.7732 4.3581 -1.8485 29 1 5.0770 5.1040 -0.3899 30 1 5.8250 4.4093 1.8440 31 1 6.9191 3.0204 2.0491 32 1 8.0378 5.4194 4.6092 33 1 3.5433 3.6937 -0.0025 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695869777.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:15 Heat of formation + Delta-G solvation = 5.486645 kcal Electronic energy + Delta-G solvation = -15051.093915 eV Core-core repulsion = 12498.959673 eV Total energy + Delta-G solvation = -2552.134242 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.22878 -39.13599 -36.89222 -34.46822 -32.58170 -31.24639 -29.66790 -28.86336 -25.78669 -24.37619 -23.37980 -21.66649 -20.76980 -19.10895 -18.39085 -17.01743 -16.68656 -16.43893 -15.72658 -15.58049 -15.53159 -14.84850 -14.30379 -13.86254 -13.66939 -13.34208 -13.17704 -13.11783 -12.84293 -12.74727 -12.44988 -12.34850 -11.97987 -11.78222 -11.52850 -11.48357 -11.37107 -10.60891 -10.33560 -8.78520 -8.23083 -6.35943 0.92275 1.41733 1.44114 1.51697 1.56121 1.83975 2.40834 2.53281 3.11571 3.78034 3.86087 4.11295 4.17565 4.20111 4.29139 4.41246 4.47617 4.58235 4.78158 4.85882 4.89118 4.99307 5.03873 5.23735 5.28910 5.32787 5.36500 5.54218 5.70246 5.99157 6.20815 6.58927 6.75311 6.78778 7.34110 8.89324 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.054538 B = 0.005279 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.276352 B = 5302.532897 C = 5422.699532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.322 6.322 4 C -0.047 4.047 5 C -0.012 4.012 6 N -0.314 5.314 7 N -0.354 5.354 8 C 0.168 3.832 9 H 0.088 0.912 10 C -0.138 4.138 11 C 0.030 3.970 12 C -0.533 4.533 13 H 0.077 0.923 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.269 1.269 18 H -0.288 1.288 19 H -0.259 1.259 20 C 0.017 3.983 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.211 0.789 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.063 0.937 30 H -0.001 1.001 31 H -0.020 1.020 32 H 0.264 0.736 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.799 -6.650 -9.365 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 O -0.235 6.235 4 C -0.102 4.102 5 C -0.197 4.197 6 N -0.138 5.138 7 N -0.141 5.141 8 C 0.067 3.933 9 H 0.106 0.894 10 C -0.196 4.196 11 C -0.008 4.008 12 C -0.572 4.572 13 H 0.095 0.905 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.794 3.206 17 H -0.194 1.194 18 H -0.214 1.214 19 H -0.183 1.183 20 C -0.128 4.128 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.119 0.881 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.227 0.773 27 H 0.107 0.893 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.017 0.983 31 H -0.002 1.002 32 H 0.073 0.927 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.632 -6.596 -9.200 14.864 hybrid contribution -0.069 0.359 0.705 0.794 sum -9.701 -6.237 -8.495 14.324 Atomic orbital electron populations 1.21777 0.91465 1.04048 1.03009 1.22940 0.96770 0.81022 1.01754 1.85955 1.15673 1.30364 1.91553 1.18624 0.84475 0.92758 1.14296 1.24382 0.89196 1.01247 1.04841 1.77185 1.23856 0.88893 1.23893 1.49027 1.05238 1.04265 1.55571 1.21543 0.86768 0.86250 0.98703 0.89397 1.21991 1.03169 0.95958 0.98516 1.19296 0.96422 0.94791 0.90335 1.21469 1.14117 1.27448 0.94138 0.90467 1.26004 1.00149 0.98432 0.95069 1.70131 1.42784 1.45644 0.98905 0.85366 0.78654 0.78854 0.77698 1.19397 1.21371 1.18270 1.21865 0.84075 0.99684 1.07207 0.92244 0.91758 0.88100 0.91413 0.92172 0.77277 0.89287 0.91013 0.91794 0.98270 1.00186 0.92748 0.79328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 71.98 0.74 -1.46 16 2 C 0.05 1.02 5.80 71.98 0.42 1.43 16 3 O -0.32 -9.52 10.23 -96.17 -0.98 -10.50 16 4 C -0.05 -1.59 6.96 22.11 0.15 -1.44 16 5 C -0.01 -0.39 11.07 85.29 0.94 0.55 16 6 N -0.31 -12.73 12.57 -56.84 -0.71 -13.45 16 7 N -0.35 -14.39 3.55 -326.51 -1.16 -15.55 16 8 C 0.17 7.02 3.35 44.99 0.15 7.17 16 9 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 10 C -0.14 -4.65 8.65 71.98 0.62 -4.03 16 11 C 0.03 1.57 4.77 29.85 0.14 1.71 16 12 C -0.53 -28.90 8.41 25.60 0.22 -28.69 16 13 H 0.08 3.85 7.06 -2.91 -0.02 3.83 16 14 C 0.00 0.09 5.46 84.65 0.46 0.55 16 15 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 16 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 C 0.02 0.62 10.65 83.45 0.89 1.51 16 21 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 25 H 0.06 1.15 8.10 -2.38 -0.02 1.13 16 26 H 0.21 5.07 7.69 -2.91 -0.02 5.04 16 27 H 0.09 3.01 6.95 -2.39 -0.02 2.99 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 2.07 7.17 -2.39 -0.02 2.05 16 30 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.19 5.99 7.28 -2.91 -0.02 5.97 16 Total: -1.00 -67.99 283.56 5.27 -62.72 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.08 Total: 10.94 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 4.74 Total: -22.69 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -1.59 Total: -85.42 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.98 Total: -10.50 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -67.99 5.27 -62.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695869777.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.205 kcal (2) G-P(sol) polarization free energy of solvation -67.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds