Wall clock time and date at job start Mon Mar 30 2020 02:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47021 * 2 1 4 4 H 1.08993 * 109.47678 * 55.00207 * 3 2 1 5 5 C 1.53007 * 109.46946 * 294.99590 * 3 2 1 6 6 C 1.53003 * 109.46556 * 175.00208 * 3 2 1 7 7 C 1.50702 * 109.46600 * 184.99369 * 6 3 2 8 8 N 1.29949 * 126.29388 * 270.02264 * 7 6 3 9 9 O 1.21294 * 110.25530 * 179.69098 * 8 7 6 10 10 C 1.33648 * 109.80818 * 0.46282 * 9 8 7 11 11 C 1.50697 * 126.54740 * 179.80345 * 10 9 8 12 12 C 1.50700 * 109.47266 * 269.69029 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 N 1.31123 * 106.89793 * 359.54329 * 10 9 8 21 21 H 1.08998 * 109.47120 * 59.99919 * 1 2 3 22 22 H 1.08995 * 109.47639 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46882 * 300.00543 * 1 2 3 24 24 H 1.09002 * 109.46882 * 239.99457 * 2 1 3 25 25 H 1.09002 * 109.46426 * 119.99879 * 2 1 3 26 26 H 1.08995 * 109.47199 * 180.02562 * 5 3 2 27 27 H 1.08999 * 109.47097 * 300.00523 * 5 3 2 28 28 H 1.08996 * 109.46873 * 60.00481 * 5 3 2 29 29 H 1.09000 * 109.47419 * 64.99806 * 6 3 2 30 30 H 1.08993 * 109.47477 * 304.99132 * 6 3 2 31 31 H 1.09004 * 109.47205 * 149.69122 * 11 10 9 32 32 H 1.08997 * 109.47395 * 29.69614 * 11 10 9 33 33 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5648 1.4442 0.1257 7 6 4.0570 2.8632 0.2490 8 7 4.3936 3.6485 -0.7301 9 8 4.7412 4.7287 -0.3016 10 6 4.6664 4.7320 1.0328 11 6 5.0132 5.8778 1.9482 12 6 6.4668 5.7888 2.3358 13 1 7.0784 4.9835 1.9568 14 6 7.0159 6.7357 3.1743 15 7 6.2724 7.7195 3.6315 16 14 8.8178 6.6259 3.6541 17 1 9.4311 5.4387 3.0062 18 1 9.5244 7.8537 3.2087 19 1 8.9303 6.4975 5.1293 20 7 4.2281 3.5498 1.3929 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 1.9989 3.1540 -1.3077 27 1 2.0699 1.5874 -2.1492 28 1 0.5490 2.1252 -1.3970 29 1 4.0029 0.9834 -0.7597 30 1 3.8571 0.8800 1.0113 31 1 4.3945 5.8271 2.8442 32 1 4.8313 6.8215 1.4341 33 1 6.6586 8.3854 4.2216 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696213932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:13 Heat of formation + Delta-G solvation = 31.168315 kcal Electronic energy + Delta-G solvation = -15039.263461 eV Core-core repulsion = 12488.242860 eV Total energy + Delta-G solvation = -2551.020601 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.70647 -37.38005 -34.92674 -33.77826 -32.09836 -30.32285 -28.38018 -27.55802 -24.33272 -23.97545 -22.34474 -20.49770 -19.89548 -17.44924 -16.53306 -16.26314 -15.38351 -14.83177 -14.64384 -14.22311 -13.54966 -13.22406 -12.65184 -12.49587 -12.24260 -12.12676 -11.92790 -11.50259 -11.28819 -11.18048 -11.00077 -10.79626 -10.66494 -10.63510 -10.45476 -10.25132 -10.05932 -9.77647 -8.87315 -8.61744 -6.24908 -4.30307 2.01388 3.02709 3.23269 3.31049 3.36601 3.84632 4.24154 4.34012 4.68391 4.82908 4.92537 4.94078 5.13507 5.28118 5.44263 5.47247 5.63004 5.70784 5.79954 5.87762 5.91751 5.98678 6.03786 6.21783 6.33038 6.37006 6.65415 6.75658 7.13220 7.20873 7.69085 7.92788 8.70311 9.01296 9.34549 10.85609 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.054462 B = 0.005192 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.996743 B = 5392.049726 C = 5444.829732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.087 4.087 4 H 0.076 0.924 5 C -0.148 4.148 6 C -0.019 4.019 7 C 0.162 3.838 8 N -0.409 5.409 9 O 0.057 5.943 10 C 0.236 3.764 11 C 0.100 3.900 12 C -0.523 4.523 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.888 5.888 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.508 5.508 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.092 -10.989 -6.228 15.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.107 4.107 4 H 0.094 0.906 5 C -0.205 4.205 6 C -0.058 4.058 7 C -0.111 4.111 8 N -0.123 5.123 9 O 0.003 5.997 10 C 0.018 3.982 11 C 0.062 3.938 12 C -0.562 4.562 13 H 0.080 0.920 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.733 3.267 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.242 5.242 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.242 -11.359 -6.667 15.537 hybrid contribution 1.066 0.190 0.404 1.156 sum -7.176 -11.169 -6.263 14.679 Atomic orbital electron populations 1.21813 0.95806 1.01367 1.02056 1.21544 0.96009 0.95774 1.02108 1.21132 0.93654 0.96638 0.99237 0.90558 1.21893 1.00881 1.01054 0.96692 1.19934 0.95430 0.86812 1.03654 1.25657 1.00682 0.99964 0.84838 1.74496 1.19935 0.93852 1.24021 1.85245 1.62374 1.27921 1.24162 1.30123 0.89268 0.96588 0.82190 1.18196 0.98689 0.86051 0.90902 1.20842 0.92953 1.12010 1.30353 0.92028 1.24931 0.98804 0.94706 0.95299 1.69937 1.36278 1.13494 1.32856 0.86296 0.83762 0.78228 0.78385 1.19591 1.20609 1.20631 1.71944 1.21628 1.03781 1.26888 0.92506 0.92904 0.92669 0.91890 0.91709 0.92551 0.92648 0.92562 0.89812 0.89141 0.91399 0.92446 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 37.16 0.36 -0.98 16 2 C -0.12 -1.13 5.40 -26.73 -0.14 -1.27 16 3 C -0.09 -1.08 2.38 -90.62 -0.22 -1.30 16 4 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 5 C -0.15 -1.85 8.76 37.16 0.33 -1.52 16 6 C -0.02 -0.28 5.32 -27.88 -0.15 -0.43 16 7 C 0.16 3.13 6.68 -156.37 -1.05 2.08 16 8 N -0.41 -8.40 11.46 30.90 0.35 -8.04 16 9 O 0.06 1.25 11.31 18.09 0.20 1.45 16 10 C 0.24 5.44 7.70 -13.06 -0.10 5.33 16 11 C 0.10 2.49 5.60 -29.04 -0.16 2.33 16 12 C -0.52 -14.19 9.09 -34.44 -0.31 -14.50 16 13 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 16 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 N -0.51 -11.28 11.55 -9.87 -0.11 -11.39 16 21 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.85 6.84 -51.93 -0.36 0.49 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 281.96 15.07 4.25 4.25 Total: -1.00 -28.46 281.96 -5.94 -34.40 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.81 Total: -3.89 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.54 Total: -8.57 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.98 Total: -43.47 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.20 Total: 1.45 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.46 -5.94 -34.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696213932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.568 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds