Wall clock time and date at job start Mon Mar 30 2020 02:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47021 * 2 1 4 4 H 1.08993 * 109.47678 * 55.00207 * 3 2 1 5 5 C 1.53007 * 109.46946 * 294.99590 * 3 2 1 6 6 C 1.53003 * 109.46556 * 175.00208 * 3 2 1 7 7 C 1.50702 * 109.46600 * 184.99369 * 6 3 2 8 8 N 1.29949 * 126.29388 * 270.02264 * 7 6 3 9 9 O 1.21294 * 110.25530 * 179.69098 * 8 7 6 10 10 C 1.33648 * 109.80818 * 0.46282 * 9 8 7 11 11 C 1.50697 * 126.54740 * 179.80345 * 10 9 8 12 12 C 1.50700 * 109.47266 * 269.69029 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 N 1.31123 * 106.89793 * 359.54329 * 10 9 8 21 21 H 1.08998 * 109.47120 * 59.99919 * 1 2 3 22 22 H 1.08995 * 109.47639 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46882 * 300.00543 * 1 2 3 24 24 H 1.09002 * 109.46882 * 239.99457 * 2 1 3 25 25 H 1.09002 * 109.46426 * 119.99879 * 2 1 3 26 26 H 1.08995 * 109.47199 * 180.02562 * 5 3 2 27 27 H 1.08999 * 109.47097 * 300.00523 * 5 3 2 28 28 H 1.08996 * 109.46873 * 60.00481 * 5 3 2 29 29 H 1.09000 * 109.47419 * 64.99806 * 6 3 2 30 30 H 1.08993 * 109.47477 * 304.99132 * 6 3 2 31 31 H 1.09004 * 109.47205 * 149.69122 * 11 10 9 32 32 H 1.08997 * 109.47395 * 29.69614 * 11 10 9 33 33 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5648 1.4442 0.1257 7 6 4.0570 2.8632 0.2490 8 7 4.3936 3.6485 -0.7301 9 8 4.7412 4.7287 -0.3016 10 6 4.6664 4.7320 1.0328 11 6 5.0132 5.8778 1.9482 12 6 6.4668 5.7888 2.3358 13 1 7.0784 4.9835 1.9568 14 6 7.0159 6.7357 3.1743 15 7 6.2724 7.7195 3.6315 16 14 8.8178 6.6259 3.6541 17 1 9.4311 5.4387 3.0062 18 1 9.5244 7.8537 3.2087 19 1 8.9303 6.4975 5.1293 20 7 4.2281 3.5498 1.3929 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 1.9989 3.1540 -1.3077 27 1 2.0699 1.5874 -2.1492 28 1 0.5490 2.1252 -1.3970 29 1 4.0029 0.9834 -0.7597 30 1 3.8571 0.8800 1.0113 31 1 4.3945 5.8271 2.8442 32 1 4.8313 6.8215 1.4341 33 1 6.6586 8.3854 4.2216 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696213932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:12 Heat of formation + Delta-G solvation = 13.909396 kcal Electronic energy + Delta-G solvation = -15040.011864 eV Core-core repulsion = 12488.242860 eV Total energy + Delta-G solvation = -2551.769004 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.39021 -38.46448 -36.56782 -35.64138 -33.83667 -31.44459 -30.24771 -28.67884 -26.02373 -25.35938 -23.89041 -22.02682 -20.93669 -19.24336 -18.32270 -18.14379 -16.79669 -16.28248 -15.65314 -15.47128 -15.15507 -14.47891 -14.29690 -14.07547 -13.66418 -13.24171 -13.10051 -12.92491 -12.80851 -12.62717 -12.60789 -12.26929 -12.13937 -11.91760 -11.85031 -11.57541 -11.54710 -11.41969 -10.68474 -10.62541 -8.31953 -6.45458 0.27599 1.35677 1.42683 1.45000 1.56730 2.04477 2.39312 2.82534 3.03072 3.22038 3.83811 3.91189 3.95401 4.31953 4.44833 4.49624 4.61982 4.69077 4.76580 4.81867 4.93809 5.02151 5.06426 5.10253 5.13982 5.18424 5.22910 5.26188 5.44986 5.51456 5.58032 5.87064 6.59189 7.23510 7.28954 8.79239 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.054462 B = 0.005192 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.996743 B = 5392.049726 C = 5444.829732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.082 4.082 4 H 0.058 0.942 5 C -0.145 4.145 6 C -0.022 4.022 7 C 0.171 3.829 8 N -0.413 5.413 9 O 0.044 5.956 10 C 0.228 3.772 11 C 0.109 3.891 12 C -0.544 4.544 13 H 0.052 0.948 14 C 0.022 3.978 15 N -0.916 5.916 16 Si 0.972 3.028 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.272 1.272 20 N -0.522 5.522 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.913 -12.640 -6.530 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.102 4.102 4 H 0.076 0.924 5 C -0.203 4.203 6 C -0.060 4.060 7 C -0.102 4.102 8 N -0.129 5.129 9 O -0.006 6.006 10 C 0.009 3.991 11 C 0.070 3.930 12 C -0.583 4.583 13 H 0.071 0.929 14 C -0.179 4.179 15 N -0.554 5.554 16 Si 0.796 3.204 17 H -0.196 1.196 18 H -0.196 1.196 19 H -0.198 1.198 20 N -0.257 5.257 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.067 -12.991 -6.981 16.810 hybrid contribution 0.940 0.660 0.466 1.239 sum -7.127 -12.331 -6.514 15.662 Atomic orbital electron populations 1.21818 0.95085 1.02311 1.01841 1.21510 0.96563 0.93544 1.03170 1.21111 0.92053 0.98552 0.98447 0.92368 1.21878 1.01974 0.99214 0.97187 1.20284 0.96805 0.83763 1.05177 1.26518 0.98787 1.01397 0.83474 1.74493 1.20647 0.93607 1.24172 1.85232 1.62866 1.28877 1.23586 1.29712 0.90217 0.96621 0.82562 1.17896 0.97691 0.86656 0.90725 1.21047 0.93964 1.12169 1.31072 0.92936 1.25753 1.03097 0.94130 0.94938 1.70016 1.38154 1.14043 1.33204 0.85288 0.78450 0.78383 0.78263 1.19574 1.19576 1.19774 1.71945 1.21770 1.03752 1.28273 0.92354 0.91395 0.93314 0.90460 0.91029 0.95690 0.91498 0.90984 0.87793 0.87963 0.92763 0.93014 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.67 71.98 0.70 -1.59 16 2 C -0.11 -1.81 5.40 30.59 0.17 -1.65 16 3 C -0.08 -1.89 2.38 -10.79 -0.03 -1.91 16 4 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.15 -3.40 8.76 71.98 0.63 -2.77 16 6 C -0.02 -0.58 5.32 29.85 0.16 -0.42 16 7 C 0.17 6.52 6.68 138.46 0.93 7.45 16 8 N -0.41 -16.88 11.46 -60.31 -0.69 -17.57 16 9 O 0.04 1.98 11.31 74.80 0.85 2.83 16 10 C 0.23 10.68 7.70 88.38 0.68 11.36 16 11 C 0.11 5.58 5.60 29.10 0.16 5.74 16 12 C -0.54 -29.95 9.09 25.60 0.23 -29.72 16 13 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 14 C 0.02 1.17 5.46 84.66 0.46 1.63 16 15 N -0.92 -51.33 13.29 21.45 0.28 -51.04 16 16 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 N -0.52 -23.28 11.55 -303.19 -3.50 -26.79 16 21 H 0.06 0.85 6.56 -2.39 -0.02 0.83 16 22 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.02 0.73 6.84 -2.39 -0.02 0.71 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.43 6.56 -2.39 -0.02 1.42 16 29 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.05 2.88 8.14 -2.38 -0.02 2.87 16 32 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -60.23 281.96 4.14 -56.10 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.09 Total: 3.88 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 4.09 Total: -11.88 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -3.91 Total: -95.40 kcal Atomic # 8 Polarization: 1.98 SS G_CDS: 0.85 Total: 2.83 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -60.23 4.14 -56.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696213932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.004 kcal (2) G-P(sol) polarization free energy of solvation -60.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds