Wall clock time and date at job start Mon Mar 30 2020 02:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50698 * 120.00463 * 2 1 4 4 C 1.50707 * 109.47106 * 124.99857 * 3 2 1 5 5 O 1.21275 * 120.00197 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99596 * 180.02562 * 4 3 2 7 7 C 1.46969 * 120.59184 * 179.97438 * 6 4 3 8 8 C 1.53365 * 108.63823 * 235.24762 * 7 6 4 9 9 N 1.46971 * 108.63406 * 310.57818 * 8 7 6 10 10 C 1.36933 * 120.58954 * 235.20080 * 9 8 7 11 11 H 1.08004 * 119.99676 * 151.84704 * 10 9 8 12 12 C 1.38804 * 120.00274 * 331.57456 * 10 9 8 13 13 N 1.31613 * 120.00257 * 342.82344 * 12 10 9 14 14 Si 1.86809 * 120.00042 * 162.81945 * 12 10 9 15 15 H 1.48504 * 109.46931 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46750 * 119.99895 * 14 12 10 17 17 H 1.48498 * 109.47076 * 239.99975 * 14 12 10 18 18 C 1.46964 * 118.81046 * 55.47559 * 9 8 7 19 19 C 1.46965 * 120.59893 * 0.02562 * 6 4 3 20 20 H 1.08005 * 119.99984 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.00436 * 180.02562 * 1 2 3 22 22 H 1.08005 * 119.99984 * 180.02562 * 2 1 3 23 23 H 1.09008 * 109.47104 * 5.00173 * 3 2 1 24 24 H 1.08996 * 109.47686 * 245.00372 * 3 2 1 25 25 H 1.09001 * 109.60759 * 115.50025 * 7 6 4 26 26 H 1.08998 * 109.74755 * 355.07824 * 7 6 4 27 27 H 1.08993 * 109.61301 * 190.83327 * 8 7 6 28 28 H 1.09004 * 109.75220 * 70.40370 * 8 7 6 29 29 H 0.97004 * 120.00510 * 180.02562 * 13 12 10 30 30 H 1.08995 * 109.60931 * 64.27031 * 18 9 8 31 31 H 1.09004 * 109.60392 * 184.78099 * 18 9 8 32 32 H 1.09002 * 109.60509 * 244.49992 * 19 6 4 33 33 H 1.09000 * 109.60856 * 4.83277 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0204 1.3325 1.1639 5 8 3.0845 0.3855 1.9188 6 7 3.8050 2.4096 1.3659 7 6 4.7424 2.4506 2.4971 8 6 4.4555 3.7086 3.3261 9 7 4.3885 4.8634 2.4195 10 6 5.1850 5.9580 2.6253 11 1 5.4853 6.5722 1.7892 12 6 5.6019 6.2815 3.9092 13 7 4.9832 5.7678 4.9510 14 14 7.0412 7.4460 4.1583 15 1 7.5595 7.8821 2.8367 16 1 6.5901 8.6327 4.9287 17 1 8.1177 6.7493 4.9073 18 6 3.4471 4.8247 1.2916 19 6 3.7377 3.5647 0.4597 20 1 -0.5400 0.9354 0.0004 21 1 -0.5401 -0.9353 0.0004 22 1 1.8499 -0.9354 -0.0004 23 1 1.3586 2.1317 0.0896 24 1 2.6212 1.4026 -0.9313 25 1 5.7657 2.4845 2.1231 26 1 4.6091 1.5649 3.1181 27 1 5.2549 3.8589 4.0515 28 1 3.5047 3.5972 3.8475 29 1 5.2743 5.9941 5.8483 30 1 2.4252 4.7891 1.6692 31 1 3.5806 5.7123 0.6732 32 1 4.6893 3.6780 -0.0597 33 1 2.9399 3.4131 -0.2674 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700859882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:44 Heat of formation + Delta-G solvation = 11.629407 kcal Electronic energy + Delta-G solvation = -15644.588853 eV Core-core repulsion = 13092.720981 eV Total energy + Delta-G solvation = -2551.867872 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.62019 -36.86293 -34.42114 -33.88523 -31.19321 -30.52628 -28.13870 -26.54316 -23.64351 -22.78985 -20.89097 -19.68365 -18.52105 -17.11632 -16.11262 -15.81484 -15.14553 -14.79284 -14.44758 -13.69034 -13.53663 -13.33138 -13.17264 -12.98988 -12.43346 -11.81498 -11.70608 -11.29443 -11.06984 -10.83078 -10.73145 -10.55704 -10.25599 -9.98087 -9.84728 -9.64700 -9.14053 -8.60739 -8.22986 -6.72776 -5.86196 -3.31898 2.26672 3.01743 3.33110 3.40992 3.42884 3.53782 4.42941 4.84973 4.89548 5.15060 5.30020 5.31879 5.44354 5.60965 5.72657 5.76170 5.87102 5.89835 6.14392 6.33507 6.38134 6.49109 6.62146 6.68577 6.73739 6.87204 7.25742 7.54172 7.71310 7.93154 8.34806 8.59388 9.10542 9.73353 10.30173 11.21217 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.061138 B = 0.006391 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.866862 B = 4380.389896 C = 4546.259780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.115 4.115 4 C 0.510 3.490 5 O -0.555 6.555 6 N -0.599 5.599 7 C 0.087 3.913 8 C 0.158 3.842 9 N -0.591 5.591 10 C -0.258 4.258 11 H 0.068 0.932 12 C 0.004 3.996 13 N -0.901 5.901 14 Si 0.904 3.096 15 H -0.277 1.277 16 H -0.290 1.290 17 H -0.288 1.288 18 C 0.130 3.870 19 C 0.088 3.912 20 H 0.095 0.905 21 H 0.098 0.902 22 H 0.113 0.887 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.023 0.977 29 H 0.255 0.745 30 H 0.023 0.977 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 -6.127 -10.206 12.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.144 4.144 3 C -0.154 4.154 4 C 0.298 3.702 5 O -0.434 6.434 6 N -0.331 5.331 7 C -0.036 4.036 8 C 0.032 3.968 9 N -0.314 5.314 10 C -0.387 4.387 11 H 0.086 0.914 12 C -0.195 4.195 13 N -0.545 5.545 14 Si 0.734 3.266 15 H -0.202 1.202 16 H -0.217 1.217 17 H -0.214 1.214 18 C 0.003 3.997 19 C -0.037 4.037 20 H 0.114 0.886 21 H 0.116 0.884 22 H 0.131 0.869 23 H 0.114 0.886 24 H 0.117 0.883 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.448 -6.554 -9.621 12.462 hybrid contribution 0.699 0.725 0.232 1.033 sum -3.749 -5.829 -9.389 11.670 Atomic orbital electron populations 1.23782 0.95712 1.01810 1.02190 1.22552 0.95670 0.97629 0.98533 1.20852 0.98490 0.97899 0.98194 1.20481 0.81088 0.82307 0.86311 1.90643 1.69015 1.35732 1.48032 1.48104 1.39453 1.16306 1.29239 1.22480 0.91397 1.01570 0.88198 1.21188 1.01200 0.82897 0.91545 1.44023 1.42625 1.15543 1.29238 1.19233 1.23082 1.04537 0.91890 0.91404 1.25093 0.99801 0.98836 0.95767 1.70030 1.39757 1.47000 0.97677 0.86206 0.82343 0.80254 0.77841 1.20176 1.21662 1.21442 1.21361 0.93207 0.94435 0.90736 1.22463 1.01357 0.87561 0.92286 0.88629 0.88361 0.86901 0.88610 0.88282 0.92252 0.90188 0.88281 0.95888 0.93469 0.95885 0.91450 0.91549 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.17 14.32 29.02 0.42 -1.76 16 2 C -0.13 -1.58 8.76 -36.02 -0.32 -1.89 16 3 C -0.11 -1.47 4.49 -29.03 -0.13 -1.60 16 4 C 0.51 9.00 7.69 -10.98 -0.08 8.91 16 5 O -0.56 -11.69 15.44 5.56 0.09 -11.60 16 6 N -0.60 -10.94 2.95 -172.24 -0.51 -11.45 16 7 C 0.09 1.78 6.59 -3.60 -0.02 1.76 16 8 C 0.16 3.80 5.51 -3.60 -0.02 3.78 16 9 N -0.59 -14.42 2.96 -171.80 -0.51 -14.92 16 10 C -0.26 -6.85 9.57 -15.06 -0.14 -6.99 16 11 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 12 C 0.00 0.11 4.91 -17.44 -0.09 0.02 16 13 N -0.90 -25.82 11.20 55.49 0.62 -25.20 16 14 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.13 2.55 6.70 -3.39 -0.02 2.52 16 19 C 0.09 1.41 6.52 -3.39 -0.02 1.38 16 20 H 0.10 0.96 7.84 -52.48 -0.41 0.55 16 21 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 22 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 23 H 0.10 1.11 7.37 -51.92 -0.38 0.72 16 24 H 0.10 1.04 7.91 -51.93 -0.41 0.63 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.08 1.66 7.00 -51.93 -0.36 1.29 16 27 H 0.10 2.62 6.00 -51.93 -0.31 2.31 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.24 7.93 -51.93 -0.41 0.82 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.89 5.91 -51.93 -0.31 0.58 16 LS Contribution 273.36 15.07 4.12 4.12 Total: -1.00 -31.07 273.36 -6.34 -37.41 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.68 Total: -0.63 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.43 Total: 6.14 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.40 Total: -51.57 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.07 -6.34 -37.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700859882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.037 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds