Wall clock time and date at job start Mon Mar 30 2020 02:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50698 * 120.00463 * 2 1 4 4 C 1.50707 * 109.47106 * 124.99857 * 3 2 1 5 5 O 1.21275 * 120.00197 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99596 * 180.02562 * 4 3 2 7 7 C 1.46969 * 120.59184 * 179.97438 * 6 4 3 8 8 C 1.53365 * 108.63823 * 235.24762 * 7 6 4 9 9 N 1.46971 * 108.63406 * 310.57818 * 8 7 6 10 10 C 1.36933 * 120.58954 * 235.20080 * 9 8 7 11 11 H 1.08004 * 119.99676 * 151.84704 * 10 9 8 12 12 C 1.38804 * 120.00274 * 331.57456 * 10 9 8 13 13 N 1.31613 * 120.00257 * 342.82344 * 12 10 9 14 14 Si 1.86809 * 120.00042 * 162.81945 * 12 10 9 15 15 H 1.48504 * 109.46931 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46750 * 119.99895 * 14 12 10 17 17 H 1.48498 * 109.47076 * 239.99975 * 14 12 10 18 18 C 1.46964 * 118.81046 * 55.47559 * 9 8 7 19 19 C 1.46965 * 120.59893 * 0.02562 * 6 4 3 20 20 H 1.08005 * 119.99984 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.00436 * 180.02562 * 1 2 3 22 22 H 1.08005 * 119.99984 * 180.02562 * 2 1 3 23 23 H 1.09008 * 109.47104 * 5.00173 * 3 2 1 24 24 H 1.08996 * 109.47686 * 245.00372 * 3 2 1 25 25 H 1.09001 * 109.60759 * 115.50025 * 7 6 4 26 26 H 1.08998 * 109.74755 * 355.07824 * 7 6 4 27 27 H 1.08993 * 109.61301 * 190.83327 * 8 7 6 28 28 H 1.09004 * 109.75220 * 70.40370 * 8 7 6 29 29 H 0.97004 * 120.00510 * 180.02562 * 13 12 10 30 30 H 1.08995 * 109.60931 * 64.27031 * 18 9 8 31 31 H 1.09004 * 109.60392 * 184.78099 * 18 9 8 32 32 H 1.09002 * 109.60509 * 244.49992 * 19 6 4 33 33 H 1.09000 * 109.60856 * 4.83277 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0204 1.3325 1.1639 5 8 3.0845 0.3855 1.9188 6 7 3.8050 2.4096 1.3659 7 6 4.7424 2.4506 2.4971 8 6 4.4555 3.7086 3.3261 9 7 4.3885 4.8634 2.4195 10 6 5.1850 5.9580 2.6253 11 1 5.4853 6.5722 1.7892 12 6 5.6019 6.2815 3.9092 13 7 4.9832 5.7678 4.9510 14 14 7.0412 7.4460 4.1583 15 1 7.5595 7.8821 2.8367 16 1 6.5901 8.6327 4.9287 17 1 8.1177 6.7493 4.9073 18 6 3.4471 4.8247 1.2916 19 6 3.7377 3.5647 0.4597 20 1 -0.5400 0.9354 0.0004 21 1 -0.5401 -0.9353 0.0004 22 1 1.8499 -0.9354 -0.0004 23 1 1.3586 2.1317 0.0896 24 1 2.6212 1.4026 -0.9313 25 1 5.7657 2.4845 2.1231 26 1 4.6091 1.5649 3.1181 27 1 5.2549 3.8589 4.0515 28 1 3.5047 3.5972 3.8475 29 1 5.2743 5.9941 5.8483 30 1 2.4252 4.7891 1.6692 31 1 3.5806 5.7123 0.6732 32 1 4.6893 3.6780 -0.0597 33 1 2.9399 3.4131 -0.2674 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700859882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:44 Heat of formation + Delta-G solvation = -8.282314 kcal Electronic energy + Delta-G solvation = -15645.452290 eV Core-core repulsion = 13092.720981 eV Total energy + Delta-G solvation = -2552.731309 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.05101 -38.49342 -35.63943 -35.42008 -33.06537 -32.13028 -29.43919 -28.14901 -25.41539 -24.40085 -22.41882 -20.86725 -19.93864 -18.75261 -17.75579 -17.08010 -16.71774 -16.46941 -15.70596 -15.46878 -15.24222 -14.97668 -14.50689 -14.26012 -13.81665 -13.37582 -13.15317 -12.81517 -12.69698 -12.44534 -12.26010 -12.04620 -11.99797 -11.80868 -11.65895 -10.91880 -10.62489 -10.21641 -9.80766 -8.66855 -7.89197 -5.38312 1.34968 1.47206 1.49870 1.59990 1.67089 2.16667 2.51215 3.26089 3.59975 3.68935 3.93504 4.21454 4.25148 4.36872 4.41977 4.53271 4.57585 4.67671 4.72620 4.81524 4.88781 5.05499 5.09061 5.25416 5.45375 5.60735 5.67818 5.74748 5.84932 6.34737 6.55195 7.08555 7.21045 7.78571 8.31890 9.16316 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.061138 B = 0.006391 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.866862 B = 4380.389896 C = 4546.259780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.152 4.152 3 C -0.104 4.104 4 C 0.504 3.496 5 O -0.596 6.596 6 N -0.605 5.605 7 C 0.101 3.899 8 C 0.170 3.830 9 N -0.610 5.610 10 C -0.262 4.262 11 H 0.077 0.923 12 C -0.052 4.052 13 N -0.939 5.939 14 Si 0.969 3.031 15 H -0.261 1.261 16 H -0.294 1.294 17 H -0.293 1.293 18 C 0.123 3.877 19 C 0.098 3.902 20 H 0.109 0.891 21 H 0.110 0.890 22 H 0.102 0.898 23 H 0.116 0.884 24 H 0.131 0.869 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.068 0.932 28 H -0.010 1.010 29 H 0.250 0.750 30 H 0.016 0.984 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.048 -5.870 -12.810 14.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.171 4.171 3 C -0.143 4.143 4 C 0.295 3.705 5 O -0.478 6.478 6 N -0.337 5.337 7 C -0.023 4.023 8 C 0.043 3.957 9 N -0.333 5.333 10 C -0.392 4.392 11 H 0.095 0.905 12 C -0.247 4.247 13 N -0.585 5.585 14 Si 0.797 3.203 15 H -0.185 1.185 16 H -0.221 1.221 17 H -0.220 1.220 18 C -0.003 4.003 19 C -0.026 4.026 20 H 0.127 0.873 21 H 0.128 0.872 22 H 0.120 0.880 23 H 0.134 0.866 24 H 0.148 0.852 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.008 0.992 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.974 -6.291 -12.287 14.673 hybrid contribution 0.759 0.620 1.017 1.412 sum -4.216 -5.671 -11.270 13.302 Atomic orbital electron populations 1.24028 0.95269 1.03112 0.99615 1.22560 0.96320 0.97318 1.00894 1.20892 0.97774 0.98718 0.96878 1.21442 0.80861 0.81160 0.87049 1.90624 1.70096 1.37219 1.49837 1.48218 1.39180 1.17523 1.28777 1.22051 0.92424 0.99003 0.88841 1.20861 0.98271 0.84863 0.91682 1.44283 1.43743 1.15046 1.30264 1.19627 1.22859 1.04615 0.92074 0.90504 1.25869 1.02266 1.00894 0.95656 1.70190 1.41472 1.49012 0.97834 0.85185 0.79114 0.77943 0.78041 1.18529 1.22139 1.21951 1.21606 0.91738 0.97239 0.89721 1.22506 1.03767 0.84566 0.91718 0.87287 0.87161 0.87950 0.86589 0.85153 0.91709 0.91090 0.91416 0.99150 0.94077 0.96569 0.89976 0.90576 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 14.32 67.79 0.97 -2.49 16 2 C -0.15 -3.44 8.76 25.66 0.22 -3.22 16 3 C -0.10 -2.26 4.49 29.10 0.13 -2.13 16 4 C 0.50 16.85 7.69 87.66 0.67 17.52 16 5 O -0.60 -24.91 15.44 -3.02 -0.05 -24.96 16 6 N -0.61 -21.04 2.95 -817.25 -2.41 -23.45 16 7 C 0.10 4.18 6.59 86.41 0.57 4.75 16 8 C 0.17 8.43 5.51 86.41 0.48 8.91 16 9 N -0.61 -29.63 2.96 -697.46 -2.06 -31.69 16 10 C -0.26 -13.81 9.57 84.03 0.80 -13.01 16 11 H 0.08 3.85 7.89 -2.91 -0.02 3.82 16 12 C -0.05 -2.82 4.91 84.86 0.42 -2.41 16 13 N -0.94 -55.54 11.20 21.65 0.24 -55.30 16 14 Si 0.97 43.84 29.59 68.60 2.03 45.87 16 15 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 16 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 17 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 18 C 0.12 4.56 6.70 86.55 0.58 5.14 16 19 C 0.10 2.78 6.52 86.55 0.56 3.34 16 20 H 0.11 1.76 7.84 -2.91 -0.02 1.74 16 21 H 0.11 1.78 8.06 -2.91 -0.02 1.76 16 22 H 0.10 2.50 8.06 -2.91 -0.02 2.48 16 23 H 0.12 2.11 7.37 -2.38 -0.02 2.09 16 24 H 0.13 2.05 7.91 -2.39 -0.02 2.03 16 25 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.07 3.03 7.00 -2.39 -0.02 3.01 16 27 H 0.07 3.76 6.00 -2.39 -0.01 3.75 16 28 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 29 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 2.78 7.93 -2.39 -0.02 2.77 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.12 2.30 5.91 -2.39 -0.01 2.29 16 Total: -1.00 -69.03 273.36 4.24 -64.79 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.08 Total: 8.34 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 5.41 Total: 16.41 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -4.23 Total: -110.44 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.05 Total: -24.96 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.03 4.24 -64.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700859882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.505 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds