Wall clock time and date at job start Mon Mar 30 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46721 * 2 1 4 4 N 1.46497 * 109.46741 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99962 * 269.74589 * 4 3 2 6 6 H 1.07990 * 120.00473 * 322.03057 * 5 4 3 7 7 C 1.38817 * 119.99763 * 142.02379 * 5 4 3 8 8 N 1.31617 * 120.00138 * 157.30322 * 7 5 4 9 9 Si 1.86808 * 120.00116 * 337.29889 * 7 5 4 10 10 H 1.48497 * 109.46982 * 95.69157 * 9 7 5 11 11 H 1.48492 * 109.47098 * 215.69585 * 9 7 5 12 12 H 1.48503 * 109.47022 * 335.69740 * 9 7 5 13 13 C 1.46500 * 120.00034 * 89.75694 * 4 3 2 14 14 C 1.50690 * 109.47589 * 89.99530 * 13 4 3 15 15 C 1.34335 * 126.44599 * 90.02280 * 14 13 4 16 16 N 1.34474 * 107.67346 * 180.02562 * 15 14 13 17 17 C 1.30256 * 108.69979 * 359.97438 * 16 15 14 18 18 C 1.50700 * 125.62228 * 179.97438 * 17 16 15 19 19 O 1.33974 * 108.75972 * 0.02562 * 17 16 15 20 20 H 1.09000 * 109.46864 * 299.99529 * 1 2 3 21 21 H 1.09001 * 109.47126 * 60.00079 * 1 2 3 22 22 H 1.09007 * 109.46710 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46864 * 240.00471 * 2 1 3 24 24 H 1.09001 * 109.47126 * 119.99921 * 2 1 3 25 25 H 1.09000 * 109.46968 * 60.00048 * 3 2 1 26 26 H 1.09001 * 109.47255 * 299.99841 * 3 2 1 27 27 H 0.97000 * 120.00418 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47124 * 329.98926 * 13 4 3 29 29 H 1.09009 * 109.46893 * 210.00037 * 13 4 3 30 30 H 1.08005 * 126.16362 * 359.95979 * 15 14 13 31 31 H 1.08996 * 109.47307 * 270.02959 * 18 17 16 32 32 H 1.09007 * 109.46636 * 30.03019 * 18 17 16 33 33 H 1.08997 * 109.47060 * 150.02477 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.4477 1.1850 6 1 3.8220 2.0266 2.0190 7 6 5.3579 0.7085 1.3149 8 7 6.2427 1.0319 2.2341 9 14 5.6736 -0.7455 0.1852 10 1 6.5137 -0.3099 -0.9591 11 1 6.3783 -1.8137 0.9385 12 1 4.3795 -1.2685 -0.3217 13 6 4.2369 1.4374 -1.2696 14 6 4.4878 2.8563 -1.7107 15 6 5.5570 3.6099 -1.4047 16 7 5.3938 4.8080 -1.9930 17 6 4.2650 4.8038 -2.6431 18 6 3.7065 5.9548 -3.4395 19 8 3.6818 3.6079 -2.4861 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 7.0589 0.5156 2.3246 28 1 3.6476 0.9203 -2.0269 29 1 5.1894 0.9240 -1.1375 30 1 6.3959 3.3082 -0.7951 31 1 3.0882 6.5777 -2.7932 32 1 4.5264 6.5500 -3.8417 33 1 3.1011 5.5691 -4.2598 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701870160.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:40 Heat of formation + Delta-G solvation = 13.630369 kcal Electronic energy + Delta-G solvation = -15716.816030 eV Core-core repulsion = 13165.034927 eV Total energy + Delta-G solvation = -2551.781103 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.16677 -38.38033 -35.65012 -34.72966 -33.82426 -32.55976 -29.94284 -27.60083 -26.51148 -23.91755 -23.24645 -22.06611 -21.56440 -19.18377 -17.83519 -17.55084 -17.30660 -16.21729 -15.84852 -15.49758 -15.01924 -14.69629 -14.43153 -14.20797 -14.05749 -13.77955 -13.42774 -13.08894 -12.87098 -12.53316 -12.33973 -12.21758 -12.19874 -12.15185 -11.62206 -11.49162 -11.40478 -10.72556 -9.60944 -8.97263 -8.25857 -5.68033 0.55501 1.27178 1.40233 1.50065 1.73156 1.82286 2.36173 2.99601 3.25538 3.29856 3.93241 4.14169 4.19959 4.22256 4.34334 4.51474 4.61878 4.67658 4.73355 4.74626 4.75943 4.89302 5.06350 5.10158 5.14785 5.25016 5.38933 5.52020 5.55718 5.86772 6.12511 6.80488 6.85116 7.49200 7.91382 8.92987 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.011422 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.595512 B = 2450.770828 C = 3346.125592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.147 3.853 4 N -0.600 5.600 5 C -0.266 4.266 6 H 0.037 0.963 7 C -0.008 4.008 8 N -0.938 5.938 9 Si 0.927 3.073 10 H -0.269 1.269 11 H -0.303 1.303 12 H -0.244 1.244 13 C 0.212 3.788 14 C -0.048 4.048 15 C -0.060 4.060 16 N -0.516 5.516 17 C 0.170 3.830 18 C -0.048 4.048 19 O -0.208 6.208 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.266 0.734 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.016 2.384 -12.421 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C 0.023 3.977 4 N -0.321 5.321 5 C -0.395 4.395 6 H 0.055 0.945 7 C -0.206 4.206 8 N -0.580 5.580 9 Si 0.754 3.246 10 H -0.196 1.196 11 H -0.231 1.231 12 H -0.167 1.167 13 C 0.085 3.915 14 C -0.104 4.104 15 C -0.198 4.198 16 N -0.246 5.246 17 C -0.038 4.038 18 C -0.105 4.105 19 O -0.095 6.095 20 H 0.072 0.928 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.179 0.821 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.547 2.839 -12.303 15.247 hybrid contribution 0.553 -1.190 0.447 1.387 sum -7.994 1.649 -11.856 14.394 Atomic orbital electron populations 1.21659 0.93859 1.02083 1.02084 1.21986 0.96728 0.98105 1.00945 1.21127 0.81242 0.95566 0.99782 1.44320 1.02273 1.84927 1.00612 1.18543 1.06520 1.23455 0.90996 0.94535 1.26050 0.96352 0.99839 0.98380 1.70003 1.09155 1.40419 1.38455 0.86093 0.79196 0.80712 0.78641 1.19638 1.23123 1.16676 1.19990 0.98093 0.85113 0.88308 1.25197 0.90714 0.98548 0.95916 1.22915 1.01759 0.90507 1.04612 1.70333 1.18787 1.22628 1.12856 1.27461 0.89144 0.87576 0.99592 1.20494 1.02720 0.89020 0.98226 1.84375 1.46097 1.24064 1.54993 0.92812 0.91715 0.91948 0.92767 0.94007 0.93954 0.92263 0.92499 0.89060 0.90911 0.82124 0.87696 0.87091 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.14 -4.63 6.26 30.60 0.19 -4.44 16 3 C 0.15 5.64 5.67 86.38 0.49 6.13 16 4 N -0.60 -27.82 2.05 -706.35 -1.45 -29.27 16 5 C -0.27 -14.85 9.91 84.03 0.83 -14.02 16 6 H 0.04 2.32 8.06 -2.92 -0.02 2.30 16 7 C -0.01 -0.47 5.29 84.86 0.45 -0.02 16 8 N -0.94 -57.47 13.97 21.65 0.30 -57.16 16 9 Si 0.93 43.46 25.08 68.60 1.72 45.18 16 10 H -0.27 -11.99 6.68 99.48 0.66 -11.32 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.24 -10.59 7.11 99.48 0.71 -9.88 16 13 C 0.21 8.95 5.06 85.63 0.43 9.38 16 14 C -0.05 -2.02 6.97 24.79 0.17 -1.85 16 15 C -0.06 -2.69 11.80 83.40 0.98 -1.71 16 16 N -0.52 -21.11 11.29 -303.81 -3.43 -24.54 16 17 C 0.17 5.70 8.34 88.34 0.74 6.44 16 18 C -0.05 -0.90 10.51 71.24 0.75 -0.15 16 19 O -0.21 -7.76 10.78 -3.76 -0.04 -7.80 16 20 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 26 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.09 3.25 8.07 -2.39 -0.02 3.23 16 29 H 0.07 3.27 3.36 -2.38 -0.01 3.27 16 30 H 0.16 7.66 8.06 -2.91 -0.02 7.64 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -68.50 280.89 3.89 -64.61 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.04 Total: 12.00 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.75 Total: -3.00 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -4.58 Total: -110.98 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.04 Total: -7.80 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.72 Total: 45.18 kcal Total: -68.50 3.89 -64.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701870160.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.240 kcal (2) G-P(sol) polarization free energy of solvation -68.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds