Wall clock time and date at job start Mon Mar 30 2020 02:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30253 * 125.62085 * 2 1 4 4 C 1.34476 * 108.70218 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.67001 * 359.97438 * 4 3 2 6 6 C 1.50696 * 126.44286 * 179.97438 * 5 4 3 7 7 N 1.46507 * 109.46785 * 90.03049 * 6 5 4 8 8 C 1.36936 * 120.00070 * 269.99815 * 7 6 5 9 9 H 1.07999 * 119.99664 * 144.80203 * 8 7 6 10 10 C 1.38808 * 120.00162 * 324.80846 * 8 7 6 11 11 N 1.31613 * 120.00239 * 157.26295 * 10 8 7 12 12 Si 1.86803 * 119.99833 * 337.26256 * 10 8 7 13 13 H 1.48497 * 109.47321 * 95.34945 * 12 10 8 14 14 H 1.48506 * 109.46906 * 215.34935 * 12 10 8 15 15 H 1.48502 * 109.47202 * 335.34664 * 12 10 8 16 16 C 1.46497 * 119.99738 * 90.00103 * 7 6 5 17 17 C 1.53000 * 109.47111 * 121.80049 * 16 7 6 18 18 C 1.53000 * 109.47069 * 241.79929 * 16 7 6 19 19 O 1.33970 * 125.62086 * 179.97438 * 2 1 3 20 20 H 1.09003 * 109.47163 * 270.01846 * 1 2 3 21 21 H 1.08996 * 109.47267 * 30.02028 * 1 2 3 22 22 H 1.09004 * 109.47173 * 150.02453 * 1 2 3 23 23 H 1.07997 * 126.16054 * 180.02562 * 4 3 2 24 24 H 1.09000 * 109.47221 * 210.02890 * 6 5 4 25 25 H 1.09001 * 109.47469 * 330.03490 * 6 5 4 26 26 H 0.97001 * 120.00237 * 180.02562 * 11 10 8 27 27 H 1.09006 * 109.47674 * 1.80048 * 16 7 6 28 28 H 1.08998 * 109.46974 * 65.32154 * 17 16 7 29 29 H 1.09006 * 109.46893 * 185.31812 * 17 16 7 30 30 H 1.09000 * 109.47180 * 305.31723 * 17 16 7 31 31 H 1.08999 * 109.47023 * 55.15997 * 18 16 7 32 32 H 1.08998 * 109.47439 * 175.15704 * 18 16 7 33 33 H 1.08997 * 109.47494 * 295.15717 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6757 0.0015 6 6 4.7937 -1.5549 0.0018 7 7 5.1901 -1.8394 1.3833 8 6 6.0673 -1.0092 2.0287 9 1 5.9565 -0.8242 3.0869 10 6 7.0988 -0.4054 1.3228 11 7 7.6533 0.6966 1.7815 12 14 7.7000 -1.1571 -0.2782 13 1 7.0177 -0.4987 -1.4211 14 1 9.1671 -0.9600 -0.3973 15 1 7.3932 -2.6100 -0.2889 16 6 4.6481 -3.0120 2.0741 17 6 5.7981 -3.9139 2.5269 18 6 3.8445 -2.5587 3.2946 19 8 2.2873 -1.0890 0.0005 20 1 -0.3634 0.0003 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3634 -0.8902 -0.5135 23 1 4.4156 1.3162 0.0011 24 1 4.5696 -2.4898 -0.5117 25 1 5.6081 -1.0442 -0.5120 26 1 8.3738 1.1187 1.2880 27 1 3.9981 -3.5651 1.3960 28 1 6.3942 -3.3937 3.2766 29 1 5.3936 -4.8305 2.9564 30 1 6.4257 -4.1601 1.6704 31 1 3.0788 -1.8487 2.9821 32 1 3.3704 -3.4233 3.7590 33 1 4.5117 -2.0812 4.0121 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701870438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:39 Heat of formation + Delta-G solvation = 20.517336 kcal Electronic energy + Delta-G solvation = -16029.117376 eV Core-core repulsion = 13477.634914 eV Total energy + Delta-G solvation = -2551.482462 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.15302 -38.67321 -35.63471 -34.47375 -33.76383 -32.07985 -29.45350 -27.85580 -26.75334 -25.03162 -23.23284 -21.93774 -21.25931 -18.85722 -17.83314 -17.50402 -17.18027 -16.53712 -15.72003 -15.20292 -14.91541 -14.61971 -14.28006 -14.13311 -13.85150 -13.72891 -13.43721 -13.18475 -12.97564 -12.64511 -12.38492 -12.18455 -12.14619 -12.07465 -11.64680 -11.53318 -11.38602 -10.66447 -9.58659 -8.95821 -8.19996 -5.58921 0.57380 1.28094 1.41675 1.49967 1.74428 1.83635 2.39099 3.02428 3.25888 3.28975 3.94562 4.15018 4.20374 4.22825 4.40388 4.56405 4.62929 4.67317 4.74414 4.75891 4.88666 5.01130 5.07546 5.08116 5.12149 5.13152 5.48088 5.53044 5.57767 5.91973 6.19550 6.82356 6.89967 7.56636 7.96315 8.99058 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.025056 B = 0.011627 C = 0.009375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.216635 B = 2407.607265 C = 2986.093597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.169 3.831 3 N -0.516 5.516 4 C -0.062 4.062 5 C -0.044 4.044 6 C 0.208 3.792 7 N -0.596 5.596 8 C -0.247 4.247 9 H 0.043 0.957 10 C -0.015 4.015 11 N -0.942 5.942 12 Si 0.925 3.075 13 H -0.273 1.273 14 H -0.307 1.307 15 H -0.245 1.245 16 C 0.156 3.844 17 C -0.142 4.142 18 C -0.143 4.143 19 O -0.206 6.206 20 H 0.104 0.896 21 H 0.110 0.890 22 H 0.111 0.889 23 H 0.159 0.841 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.263 0.737 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.026 0.974 32 H 0.078 0.922 33 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.985 -8.255 -4.487 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.038 4.038 3 N -0.247 5.247 4 C -0.200 4.200 5 C -0.100 4.100 6 C 0.081 3.919 7 N -0.317 5.317 8 C -0.376 4.376 9 H 0.060 0.940 10 C -0.212 4.212 11 N -0.586 5.586 12 Si 0.753 3.247 13 H -0.200 1.200 14 H -0.236 1.236 15 H -0.168 1.168 16 C 0.052 3.948 17 C -0.201 4.201 18 C -0.201 4.201 19 O -0.094 6.094 20 H 0.122 0.878 21 H 0.128 0.872 22 H 0.130 0.870 23 H 0.176 0.824 24 H 0.112 0.888 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.093 -7.620 -4.466 14.975 hybrid contribution 1.311 0.029 -0.353 1.358 sum -10.781 -7.592 -4.819 14.039 Atomic orbital electron populations 1.20484 0.77599 1.06526 1.05849 1.27418 0.98195 0.78419 0.99804 1.70323 1.02240 1.31937 1.20197 1.22872 0.94627 0.94174 1.08313 1.25216 0.84130 0.96441 1.04251 1.20078 0.87174 0.96511 0.88112 1.44492 1.49192 1.26640 1.11377 1.18447 1.04476 1.20673 0.94025 0.93951 1.25954 0.97166 0.96612 1.01424 1.70002 1.27749 1.18191 1.42625 0.86138 0.76442 0.81343 0.80751 1.20003 1.23598 1.16846 1.20759 0.94206 0.86389 0.93471 1.22004 0.98535 0.98818 1.00737 1.22017 0.98871 1.00591 0.98657 1.84372 1.16583 1.38032 1.70401 0.87767 0.87160 0.87038 0.82380 0.88831 0.91043 0.92769 0.90320 0.94404 0.90390 0.93758 0.95484 0.90323 0.94884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.90 10.51 71.24 0.75 -0.16 16 2 C 0.17 5.69 8.34 88.34 0.74 6.43 16 3 N -0.52 -21.25 11.29 -303.83 -3.43 -24.68 16 4 C -0.06 -2.79 11.80 83.39 0.98 -1.80 16 5 C -0.04 -1.86 6.97 24.79 0.17 -1.69 16 6 C 0.21 8.68 5.03 85.63 0.43 9.11 16 7 N -0.60 -26.84 2.05 -682.33 -1.40 -28.24 16 8 C -0.25 -13.42 8.75 84.03 0.74 -12.69 16 9 H 0.04 2.62 7.17 -2.91 -0.02 2.59 16 10 C -0.01 -0.83 5.31 84.86 0.45 -0.38 16 11 N -0.94 -57.67 13.97 21.65 0.30 -57.37 16 12 Si 0.93 43.44 24.96 68.60 1.71 45.16 16 13 H -0.27 -12.23 6.66 99.48 0.66 -11.57 16 14 H -0.31 -14.85 7.11 99.48 0.71 -14.15 16 15 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 16 C 0.16 5.77 3.36 44.99 0.15 5.92 16 17 C -0.14 -4.86 9.04 71.98 0.65 -4.21 16 18 C -0.14 -5.11 9.11 71.98 0.66 -4.46 16 19 O -0.21 -7.66 10.78 -3.73 -0.04 -7.70 16 20 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.16 7.62 8.06 -2.91 -0.02 7.60 16 24 H 0.09 3.25 7.90 -2.39 -0.02 3.24 16 25 H 0.07 3.20 2.97 -2.39 -0.01 3.19 16 26 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 27 H 0.08 2.52 7.78 -2.38 -0.02 2.50 16 28 H 0.04 1.46 7.80 -2.39 -0.02 1.44 16 29 H 0.08 2.05 8.14 -2.38 -0.02 2.04 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.03 1.32 7.25 -2.39 -0.02 1.30 16 Total: -1.00 -68.21 276.39 3.91 -64.30 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.04 Total: 12.45 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.72 Total: -3.92 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -4.53 Total: -110.29 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.04 Total: -7.70 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.71 Total: 45.16 kcal Total: -68.21 3.91 -64.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701870438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.819 kcal (2) G-P(sol) polarization free energy of solvation -68.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds