Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34333 * 126.44049 * 2 1 4 4 N 1.34484 * 107.66372 * 179.76771 * 3 2 1 5 5 C 1.30255 * 108.70190 * 0.41861 * 4 3 2 6 6 C 1.50700 * 125.61546 * 179.84293 * 5 4 3 7 7 N 1.46499 * 109.47380 * 89.69463 * 6 5 4 8 8 C 1.36939 * 120.00129 * 89.99319 * 7 6 5 9 9 H 1.07998 * 119.99831 * 326.37166 * 8 7 6 10 10 C 1.38812 * 119.99785 * 146.08815 * 8 7 6 11 11 N 1.31620 * 120.00242 * 345.52120 * 10 8 7 12 12 Si 1.86796 * 119.99986 * 165.52017 * 10 8 7 13 13 H 1.48504 * 109.47220 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47282 * 119.99946 * 12 10 8 15 15 H 1.48494 * 109.47250 * 240.00340 * 12 10 8 16 16 C 1.46500 * 119.99871 * 269.99679 * 7 6 5 17 17 C 1.52997 * 109.47164 * 296.68606 * 16 7 6 18 18 C 1.53001 * 109.46914 * 56.68451 * 16 7 6 19 19 O 1.33961 * 108.76120 * 359.57717 * 5 4 3 20 20 H 1.09000 * 109.46906 * 269.98108 * 1 2 3 21 21 H 1.09005 * 109.46793 * 29.97922 * 1 2 3 22 22 H 1.09003 * 109.46876 * 149.97819 * 1 2 3 23 23 H 1.07993 * 126.16723 * 0.02562 * 3 2 1 24 24 H 1.08993 * 109.47105 * 329.68953 * 6 5 4 25 25 H 1.09006 * 109.46791 * 209.69192 * 6 5 4 26 26 H 0.96998 * 120.00445 * 179.97438 * 11 10 8 27 27 H 1.09003 * 109.47295 * 176.68121 * 16 7 6 28 28 H 1.08988 * 109.47421 * 59.99624 * 17 16 7 29 29 H 1.09001 * 109.46889 * 180.02562 * 17 16 7 30 30 H 1.09002 * 109.46942 * 299.99529 * 17 16 7 31 31 H 1.08997 * 109.47551 * 60.00231 * 18 16 7 32 32 H 1.09001 * 109.46987 * 179.97438 * 18 16 7 33 33 H 1.08996 * 109.47453 * 299.99598 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5766 -0.6547 -0.0007 6 6 4.8005 -1.5339 -0.0011 7 7 5.1975 -1.8191 1.3799 8 6 4.6911 -2.9155 2.0254 9 1 3.6849 -3.2478 1.8170 10 6 5.4732 -3.6031 2.9433 11 7 6.7715 -3.3923 2.9903 12 14 4.6829 -4.8276 4.1117 13 1 3.2208 -4.8817 3.8576 14 1 5.2729 -6.1727 3.8925 15 1 4.9268 -4.4026 5.5135 16 6 6.1362 -0.9312 2.0704 17 6 7.4867 -0.9587 1.3518 18 6 5.5853 0.4961 2.0661 19 8 2.3076 -1.0840 -0.0004 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.9822 2.1112 0.0004 24 1 5.6146 -1.0230 -0.5151 25 1 4.5762 -2.4687 -0.5151 26 1 7.3180 -3.8725 3.6319 27 1 6.2650 -1.2678 3.0991 28 1 7.3579 -0.6221 0.3233 29 1 8.1852 -0.2985 1.8659 30 1 7.8793 -1.9756 1.3549 31 1 4.6232 0.5158 2.5780 32 1 6.2835 1.1566 2.5802 33 1 5.4565 0.8328 1.0375 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706063751.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = 39.220501 kcal Electronic energy + Delta-G solvation = -15993.319958 eV Core-core repulsion = 13442.648526 eV Total energy + Delta-G solvation = -2550.671432 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.59620 -36.62690 -33.99752 -32.38650 -31.81316 -30.51052 -27.56185 -25.91751 -24.86791 -23.03161 -21.59325 -20.51681 -19.13078 -16.85571 -16.28385 -15.94159 -14.77724 -14.23928 -14.00318 -13.53647 -13.52236 -12.96104 -12.82904 -12.37530 -12.05394 -11.89531 -11.54111 -11.36565 -11.10598 -10.90531 -10.67360 -10.57746 -10.19030 -9.94856 -9.88531 -9.67936 -9.28763 -8.50214 -8.04132 -6.77742 -5.88500 -3.41124 2.08266 3.29031 3.33556 3.39824 3.41503 3.45287 4.43876 4.83505 5.15397 5.32036 5.39277 5.45455 5.53462 5.61062 5.80242 6.22961 6.33851 6.40297 6.48134 6.63833 6.65089 6.65761 6.72947 6.92068 6.97284 7.12354 7.25413 7.68508 7.71658 7.89081 8.40602 8.48050 9.14644 9.70899 10.25629 11.17976 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.010167 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.762408 B = 2753.315436 C = 3477.087853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.082 4.082 3 C -0.048 4.048 4 N -0.496 5.496 5 C 0.207 3.793 6 C 0.224 3.776 7 N -0.563 5.563 8 C -0.271 4.271 9 H 0.065 0.935 10 C 0.017 3.983 11 N -0.888 5.888 12 Si 0.904 3.096 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.288 1.288 16 C 0.182 3.818 17 C -0.146 4.146 18 C -0.169 4.169 19 O -0.199 6.199 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.170 0.830 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.255 0.745 27 H 0.089 0.911 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 5.741 -4.936 10.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.136 4.136 3 C -0.186 4.186 4 N -0.225 5.225 5 C -0.004 4.004 6 C 0.093 3.907 7 N -0.282 5.282 8 C -0.400 4.400 9 H 0.083 0.917 10 C -0.183 4.183 11 N -0.530 5.530 12 Si 0.733 3.267 13 H -0.201 1.201 14 H -0.214 1.214 15 H -0.214 1.214 16 C 0.077 3.923 17 C -0.204 4.204 18 C -0.228 4.228 19 O -0.086 6.086 20 H 0.094 0.906 21 H 0.101 0.899 22 H 0.090 0.910 23 H 0.187 0.813 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.202 5.950 -4.783 9.836 hybrid contribution -1.114 -0.784 0.832 1.597 sum -7.317 5.166 -3.951 9.789 Atomic orbital electron populations 1.20111 0.85213 1.03375 1.03055 1.23275 0.94770 0.85548 1.09966 1.22933 0.88850 0.99527 1.07314 1.70441 1.21914 1.10004 1.20177 1.29178 0.84733 0.91101 0.95355 1.19384 0.86432 0.94903 0.90004 1.44013 1.50507 1.26171 1.07486 1.19190 0.95985 1.04210 1.20640 0.91719 1.25156 0.94854 0.97520 1.00785 1.70017 1.03274 1.43326 1.36368 0.86220 0.79019 0.80681 0.80784 1.20143 1.21449 1.21430 1.20333 0.87470 0.86482 0.98043 1.22103 0.98254 1.02383 0.97708 1.22494 0.99272 0.98749 1.02295 1.84470 1.18507 1.36230 1.69383 0.90582 0.89855 0.90963 0.81280 0.89591 0.90474 0.93476 0.89269 0.95580 0.95140 0.90435 0.94616 0.94830 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.43 36.01 0.38 -0.32 16 2 C -0.08 -1.38 7.39 -35.68 -0.26 -1.65 16 3 C -0.05 -0.83 11.80 -17.77 -0.21 -1.03 16 4 N -0.50 -10.06 8.75 -11.10 -0.10 -10.16 16 5 C 0.21 4.36 7.24 -12.95 -0.09 4.26 16 6 C 0.22 4.80 5.63 -5.19 -0.03 4.77 16 7 N -0.56 -13.93 2.38 -167.03 -0.40 -14.32 16 8 C -0.27 -7.32 9.53 -15.06 -0.14 -7.47 16 9 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 10 C 0.02 0.47 4.91 -17.43 -0.09 0.38 16 11 N -0.89 -24.51 10.17 55.49 0.56 -23.94 16 12 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 16 C 0.18 4.35 2.37 -67.93 -0.16 4.19 16 17 C -0.15 -3.20 9.04 37.16 0.34 -2.87 16 18 C -0.17 -3.68 8.11 37.16 0.30 -3.38 16 19 O -0.20 -4.10 10.77 5.38 0.06 -4.04 16 20 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.17 2.32 8.06 -52.49 -0.42 1.90 16 24 H 0.09 1.72 6.61 -51.93 -0.34 1.38 16 25 H 0.08 1.59 8.04 -51.93 -0.42 1.17 16 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 28 H 0.03 0.52 6.79 -51.94 -0.35 0.17 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.89 7.03 -51.93 -0.37 1.52 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.49 5.53 -51.93 -0.29 1.21 16 LS Contribution 272.69 15.07 4.11 4.11 Total: -1.00 -29.56 272.69 -5.36 -34.91 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.59 Total: 0.17 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 0.03 Total: -3.11 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.07 Total: -48.42 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: 0.06 Total: -4.04 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.56 -5.36 -34.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706063751.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.134 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds