Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34333 * 126.44049 * 2 1 4 4 N 1.34484 * 107.66372 * 179.76771 * 3 2 1 5 5 C 1.30255 * 108.70190 * 0.41861 * 4 3 2 6 6 C 1.50700 * 125.61546 * 179.84293 * 5 4 3 7 7 N 1.46499 * 109.47380 * 89.69463 * 6 5 4 8 8 C 1.36939 * 120.00129 * 89.99319 * 7 6 5 9 9 H 1.07998 * 119.99831 * 326.37166 * 8 7 6 10 10 C 1.38812 * 119.99785 * 146.08815 * 8 7 6 11 11 N 1.31620 * 120.00242 * 345.52120 * 10 8 7 12 12 Si 1.86796 * 119.99986 * 165.52017 * 10 8 7 13 13 H 1.48504 * 109.47220 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47282 * 119.99946 * 12 10 8 15 15 H 1.48494 * 109.47250 * 240.00340 * 12 10 8 16 16 C 1.46500 * 119.99871 * 269.99679 * 7 6 5 17 17 C 1.52997 * 109.47164 * 296.68606 * 16 7 6 18 18 C 1.53001 * 109.46914 * 56.68451 * 16 7 6 19 19 O 1.33961 * 108.76120 * 359.57717 * 5 4 3 20 20 H 1.09000 * 109.46906 * 269.98108 * 1 2 3 21 21 H 1.09005 * 109.46793 * 29.97922 * 1 2 3 22 22 H 1.09003 * 109.46876 * 149.97819 * 1 2 3 23 23 H 1.07993 * 126.16723 * 0.02562 * 3 2 1 24 24 H 1.08993 * 109.47105 * 329.68953 * 6 5 4 25 25 H 1.09006 * 109.46791 * 209.69192 * 6 5 4 26 26 H 0.96998 * 120.00445 * 179.97438 * 11 10 8 27 27 H 1.09003 * 109.47295 * 176.68121 * 16 7 6 28 28 H 1.08988 * 109.47421 * 59.99624 * 17 16 7 29 29 H 1.09001 * 109.46889 * 180.02562 * 17 16 7 30 30 H 1.09002 * 109.46942 * 299.99529 * 17 16 7 31 31 H 1.08997 * 109.47551 * 60.00231 * 18 16 7 32 32 H 1.09001 * 109.46987 * 179.97438 * 18 16 7 33 33 H 1.08996 * 109.47453 * 299.99598 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0807 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5766 -0.6547 -0.0007 6 6 4.8005 -1.5339 -0.0011 7 7 5.1975 -1.8191 1.3799 8 6 4.6911 -2.9155 2.0254 9 1 3.6849 -3.2478 1.8170 10 6 5.4732 -3.6031 2.9433 11 7 6.7715 -3.3923 2.9903 12 14 4.6829 -4.8276 4.1117 13 1 3.2208 -4.8817 3.8576 14 1 5.2729 -6.1727 3.8925 15 1 4.9268 -4.4026 5.5135 16 6 6.1362 -0.9312 2.0704 17 6 7.4867 -0.9587 1.3518 18 6 5.5853 0.4961 2.0661 19 8 2.3076 -1.0840 -0.0004 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.9822 2.1112 0.0004 24 1 5.6146 -1.0230 -0.5151 25 1 4.5762 -2.4687 -0.5151 26 1 7.3180 -3.8725 3.6319 27 1 6.2650 -1.2678 3.0991 28 1 7.3579 -0.6221 0.3233 29 1 8.1852 -0.2985 1.8659 30 1 7.8793 -1.9756 1.3549 31 1 4.6232 0.5158 2.5780 32 1 6.2835 1.1566 2.5802 33 1 5.4565 0.8328 1.0375 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706063751.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = 20.505879 kcal Electronic energy + Delta-G solvation = -15994.131484 eV Core-core repulsion = 13442.648526 eV Total energy + Delta-G solvation = -2551.482959 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.06765 -38.47070 -35.51080 -34.00762 -33.54005 -32.15235 -29.18827 -27.68558 -26.42356 -24.85601 -23.07204 -22.03304 -20.97260 -18.75972 -17.75193 -17.49096 -16.75444 -15.97106 -15.49472 -15.30684 -15.03007 -14.33045 -14.08101 -13.81929 -13.62090 -13.38191 -13.26721 -13.04461 -12.84418 -12.75864 -12.52476 -12.19640 -12.05806 -11.78652 -11.67457 -11.41542 -11.04603 -10.49773 -9.44718 -8.71532 -7.91509 -5.46921 0.65190 1.43485 1.46594 1.56159 1.85880 2.00632 2.48959 3.21788 3.44459 3.64413 4.00087 4.22962 4.36053 4.50890 4.66725 4.69212 4.75851 4.82245 4.85602 4.89961 5.00186 5.14897 5.17644 5.27848 5.33831 5.40378 5.58034 5.62059 5.80155 6.02090 6.40650 6.98441 7.14593 7.75672 8.27002 9.12506 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.010167 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.762408 B = 2753.315436 C = 3477.087853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.076 4.076 3 C -0.064 4.064 4 N -0.503 5.503 5 C 0.179 3.821 6 C 0.228 3.772 7 N -0.579 5.579 8 C -0.282 4.282 9 H 0.052 0.948 10 C -0.026 4.026 11 N -0.907 5.907 12 Si 0.962 3.038 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.289 1.289 16 C 0.182 3.818 17 C -0.133 4.133 18 C -0.150 4.150 19 O -0.222 6.222 20 H 0.087 0.913 21 H 0.118 0.882 22 H 0.079 0.921 23 H 0.205 0.795 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.253 0.747 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.014 0.986 32 H 0.052 0.948 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 6.854 -5.311 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.130 4.130 3 C -0.202 4.202 4 N -0.233 5.233 5 C -0.031 4.031 6 C 0.099 3.901 7 N -0.299 5.299 8 C -0.412 4.412 9 H 0.070 0.930 10 C -0.224 4.224 11 N -0.550 5.550 12 Si 0.790 3.210 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.216 1.216 16 C 0.077 3.923 17 C -0.192 4.192 18 C -0.209 4.209 19 O -0.109 6.109 20 H 0.106 0.894 21 H 0.137 0.863 22 H 0.098 0.902 23 H 0.222 0.778 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.563 7.072 -5.181 11.578 hybrid contribution -0.807 -1.049 0.896 1.599 sum -8.370 6.022 -4.285 11.166 Atomic orbital electron populations 1.20403 0.81287 1.05523 1.04396 1.24337 0.96830 0.84448 1.07343 1.23543 0.87761 1.01364 1.07536 1.70369 1.23777 1.09552 1.19614 1.28643 0.84963 0.91315 0.98160 1.19346 0.87155 0.95212 0.88426 1.44099 1.51023 1.26023 1.08764 1.19268 0.95592 1.04957 1.21335 0.92981 1.25785 0.95353 0.99197 1.02086 1.70136 1.04020 1.44093 1.36737 0.85323 0.78208 0.78782 0.78715 1.19950 1.21134 1.21561 1.20255 0.88492 0.87272 0.96324 1.21926 0.97406 1.01157 0.98685 1.22294 0.98441 0.97690 1.02487 1.84444 1.18802 1.37956 1.69694 0.89429 0.86347 0.90195 0.77780 0.88446 0.90591 0.93760 0.92875 0.93955 0.93411 0.93163 0.96635 0.92911 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.43 71.24 0.74 -0.42 16 2 C -0.08 -2.42 7.39 24.79 0.18 -2.24 16 3 C -0.06 -2.06 11.80 83.39 0.98 -1.08 16 4 N -0.50 -19.73 8.75 -303.84 -2.66 -22.39 16 5 C 0.18 7.47 7.24 88.34 0.64 8.11 16 6 C 0.23 9.85 5.63 85.63 0.48 10.33 16 7 N -0.58 -29.02 2.38 -682.35 -1.62 -30.64 16 8 C -0.28 -15.51 9.53 84.03 0.80 -14.71 16 9 H 0.05 2.94 7.87 -2.91 -0.02 2.91 16 10 C -0.03 -1.42 4.91 84.86 0.42 -1.00 16 11 N -0.91 -50.97 10.17 21.65 0.22 -50.75 16 12 Si 0.96 44.55 29.58 68.60 2.03 46.58 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 16 C 0.18 8.73 2.37 44.99 0.11 8.84 16 17 C -0.13 -5.79 9.04 71.98 0.65 -5.13 16 18 C -0.15 -6.42 8.11 71.98 0.58 -5.83 16 19 O -0.22 -9.00 10.77 -3.68 -0.04 -9.04 16 20 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 22 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.21 4.86 8.06 -2.91 -0.02 4.84 16 24 H 0.10 3.87 6.61 -2.39 -0.02 3.85 16 25 H 0.08 3.20 8.04 -2.38 -0.02 3.18 16 26 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 27 H 0.05 2.93 6.17 -2.39 -0.01 2.92 16 28 H 0.04 1.66 6.79 -2.39 -0.02 1.64 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 2.46 7.03 -2.39 -0.02 2.44 16 31 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 3.10 5.53 -2.39 -0.01 3.08 16 Total: -1.00 -63.87 272.69 4.61 -59.26 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.09 Total: 10.13 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 5.59 Total: -3.14 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -4.06 Total: -103.79 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.04 Total: -9.04 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.87 4.61 -59.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706063751.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.762 kcal (2) G-P(sol) polarization free energy of solvation -63.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds