Wall clock time and date at job start Mon Mar 30 2020 03:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.49642 * 111.18650 * 2 1 4 4 C 1.50808 * 102.35985 * 146.78316 * 3 2 1 5 5 H 1.09003 * 110.17858 * 69.59324 * 4 3 2 6 6 C 1.50327 * 126.16306 * 205.95900 * 4 3 2 7 7 N 1.49489 * 104.55943 * 143.97587 * 6 4 3 8 8 C 1.34772 * 126.19771 * 172.66881 * 7 6 4 9 9 O 1.21691 * 120.00008 * 359.97438 * 8 7 6 10 10 C 1.46376 * 120.00212 * 179.97438 * 8 7 6 11 11 H 1.08004 * 119.99627 * 6.93668 * 10 8 7 12 12 C 1.40046 * 120.00148 * 186.92854 * 10 8 7 13 13 N 1.30671 * 119.99995 * 7.10708 * 12 10 8 14 14 Si 1.86802 * 120.00008 * 186.82509 * 12 10 8 15 15 H 1.48499 * 109.46907 * 84.99207 * 14 12 10 16 16 H 1.48495 * 109.47369 * 204.99348 * 14 12 10 17 17 H 1.48504 * 109.46920 * 324.99584 * 14 12 10 18 18 C 1.49871 * 107.59903 * 352.92781 * 7 6 4 19 19 C 1.51312 * 101.76492 * 333.36482 * 18 7 6 20 20 H 1.09001 * 110.47197 * 292.28851 * 19 18 7 21 21 C 1.49677 * 110.99678 * 119.87682 * 2 1 3 22 22 H 1.09000 * 109.47011 * 300.12842 * 1 2 3 23 23 H 1.09006 * 109.46892 * 60.12276 * 1 2 3 24 24 H 1.08998 * 109.47379 * 180.12161 * 1 2 3 25 25 H 1.08995 * 110.46164 * 28.67148 * 3 2 1 26 26 H 1.09005 * 111.04745 * 265.14876 * 3 2 1 27 27 H 1.08997 * 110.41579 * 25.20369 * 6 4 3 28 28 H 1.08998 * 110.51404 * 262.79320 * 6 4 3 29 29 H 0.96997 * 119.99690 * 179.71919 * 13 12 10 30 30 H 1.08998 * 110.94069 * 91.60838 * 18 7 6 31 31 H 1.08997 * 110.93997 * 215.30247 * 18 7 6 32 32 H 1.09003 * 110.37857 * 127.12310 * 21 2 1 33 33 H 1.08998 * 110.37869 * 4.76389 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0098 1.3953 0.0000 4 6 3.2756 1.2509 0.8070 5 1 4.0146 0.6770 0.2478 6 6 3.9518 2.3356 1.5982 7 7 4.4926 1.6389 2.8052 8 6 5.2992 2.1779 3.7407 9 8 5.6529 3.3383 3.6437 10 6 5.7498 1.3677 4.8734 11 1 5.5299 0.3107 4.9026 12 6 6.4662 1.9631 5.9191 13 7 6.6130 3.2610 5.9546 14 14 7.2054 0.9024 7.2675 15 1 8.5340 0.4024 6.8315 16 1 7.3618 1.7105 8.5034 17 1 6.3080 -0.2492 7.5392 18 6 3.9804 0.2306 2.7830 19 6 2.6955 0.3820 1.9984 20 1 1.9667 0.9588 2.5678 21 6 2.0053 -0.6961 1.2117 22 1 -0.3633 0.5158 0.8888 23 1 -0.3633 0.5120 -0.8911 24 1 -0.3634 -1.0276 0.0022 25 1 1.3121 2.0744 0.4899 26 1 2.2315 1.7292 -1.0137 27 1 3.2306 3.0987 1.8907 28 1 4.7623 2.7807 1.0210 29 1 7.1057 3.6737 6.6811 30 1 4.6785 -0.4298 2.2686 31 1 3.7801 -0.1270 3.7930 32 1 2.7170 -1.4690 0.9215 33 1 1.1907 -1.1279 1.7930 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706204895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:10 Heat of formation + Delta-G solvation = -2.652975 kcal Electronic energy + Delta-G solvation = -15678.190068 eV Core-core repulsion = 13125.702866 eV Total energy + Delta-G solvation = -2552.487202 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22823 -37.03519 -34.93576 -32.50722 -30.74257 -30.09256 -27.17911 -26.08934 -25.40065 -22.55099 -20.25630 -19.98048 -19.07985 -16.75353 -16.07093 -15.51653 -15.03811 -14.61253 -14.28402 -13.82244 -13.68340 -13.29045 -12.66133 -12.48730 -12.00119 -11.73235 -11.61268 -11.49778 -11.19097 -11.06725 -10.99726 -10.75724 -10.49075 -10.39725 -10.20001 -9.75575 -8.85779 -8.42707 -7.63874 -7.26128 -6.24200 -4.64926 3.13926 3.20052 3.22664 3.88782 4.01944 4.16005 4.36724 4.54256 4.90818 5.21777 5.27601 5.35298 5.38057 5.56839 5.66231 5.72068 5.76300 5.80614 5.81027 5.92790 6.03627 6.22894 6.34100 6.41702 6.57386 6.66020 6.76109 6.98252 7.18427 7.42510 8.07119 8.38216 9.00457 9.46184 10.55732 10.74140 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052403 B = 0.006671 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.188574 B = 4196.125527 C = 4586.059421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.062 3.938 4 C -0.130 4.130 5 H 0.086 0.914 6 C 0.138 3.862 7 N -0.651 5.651 8 C 0.574 3.426 9 O -0.578 6.578 10 C -0.541 4.541 11 H 0.070 0.930 12 C 0.088 3.912 13 N -0.771 5.771 14 Si 0.909 3.091 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.143 3.857 19 C -0.149 4.149 20 H 0.077 0.923 21 C 0.061 3.939 22 H 0.026 0.974 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.270 0.730 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 -7.734 -7.902 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.065 4.065 4 C -0.149 4.149 5 H 0.105 0.895 6 C 0.014 3.986 7 N -0.392 5.392 8 C 0.381 3.619 9 O -0.461 6.461 10 C -0.577 4.577 11 H 0.088 0.912 12 C -0.131 4.131 13 N -0.399 5.399 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.190 1.190 18 C 0.019 3.981 19 C -0.169 4.169 20 H 0.095 0.905 21 C -0.066 4.066 22 H 0.045 0.955 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.097 -7.128 -8.239 14.193 hybrid contribution -0.031 -0.124 1.373 1.379 sum -9.128 -7.252 -6.866 13.529 Atomic orbital electron populations 1.22511 0.88145 1.01792 1.00559 1.65010 1.07754 1.14350 1.38663 1.22196 0.94802 0.89327 1.00180 1.22419 0.97180 0.99328 0.96023 0.89521 1.20723 0.96782 0.93496 0.87593 1.50122 1.53862 1.10188 1.25049 1.18061 0.76540 0.86718 0.80575 1.90604 1.59817 1.18495 1.77190 1.20861 1.37216 0.95601 1.04067 0.91189 1.25718 0.94434 0.94792 0.98188 1.69987 1.30973 1.10095 1.28854 0.86368 0.79982 0.80360 0.79936 1.19547 1.20496 1.18953 1.21203 0.91298 0.86181 0.99438 1.22882 0.98101 0.98506 0.97396 0.90457 1.22060 0.98808 0.96195 0.89551 0.95528 0.91517 0.91443 0.93139 0.89847 0.93346 0.92394 0.91965 0.92787 0.90805 0.89967 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.24 60.06 0.55 0.74 16 2 N -0.53 -6.59 5.56 -241.09 -1.34 -7.93 16 3 C 0.06 0.80 6.55 -3.39 -0.02 0.78 16 4 C -0.13 -2.00 2.92 -90.04 -0.26 -2.26 16 5 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 6 C 0.14 2.73 6.80 -3.71 -0.03 2.70 16 7 N -0.65 -15.32 3.43 -172.62 -0.59 -15.91 16 8 C 0.57 16.88 7.78 -12.99 -0.10 16.78 16 9 O -0.58 -19.32 15.49 5.20 0.08 -19.24 16 10 C -0.54 -15.46 8.98 -35.63 -0.32 -15.78 16 11 H 0.07 1.83 6.79 -52.48 -0.36 1.48 16 12 C 0.09 2.49 5.48 -17.37 -0.10 2.39 16 13 N -0.77 -23.31 11.91 55.55 0.66 -22.65 16 14 Si 0.91 20.22 29.56 -169.99 -5.03 15.19 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 C 0.14 2.65 6.39 -3.01 -0.02 2.63 16 19 C -0.15 -2.27 2.98 -89.83 -0.27 -2.53 16 20 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 21 C 0.06 0.77 6.72 -3.64 -0.02 0.74 16 22 H 0.03 0.27 8.11 -51.93 -0.42 -0.15 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.64 7.84 -51.93 -0.41 0.24 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.39 7.29 -51.93 -0.38 1.01 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 LS Contribution 270.36 15.07 4.07 4.07 Total: -1.00 -34.08 270.36 -7.62 -41.70 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.90 Total: -1.43 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -0.58 Total: 6.20 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -1.27 Total: -46.50 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.08 Total: -19.24 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.08 -7.62 -41.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706204895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.047 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds