Wall clock time and date at job start Mon Mar 30 2020 03:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.49642 * 111.18650 * 2 1 4 4 C 1.50808 * 102.35985 * 146.78316 * 3 2 1 5 5 H 1.09003 * 110.17858 * 69.59324 * 4 3 2 6 6 C 1.50327 * 126.16306 * 205.95900 * 4 3 2 7 7 N 1.49489 * 104.55943 * 143.97587 * 6 4 3 8 8 C 1.34772 * 126.19771 * 172.66881 * 7 6 4 9 9 O 1.21691 * 120.00008 * 359.97438 * 8 7 6 10 10 C 1.46376 * 120.00212 * 179.97438 * 8 7 6 11 11 H 1.08004 * 119.99627 * 6.93668 * 10 8 7 12 12 C 1.40046 * 120.00148 * 186.92854 * 10 8 7 13 13 N 1.30671 * 119.99995 * 7.10708 * 12 10 8 14 14 Si 1.86802 * 120.00008 * 186.82509 * 12 10 8 15 15 H 1.48499 * 109.46907 * 84.99207 * 14 12 10 16 16 H 1.48495 * 109.47369 * 204.99348 * 14 12 10 17 17 H 1.48504 * 109.46920 * 324.99584 * 14 12 10 18 18 C 1.49871 * 107.59903 * 352.92781 * 7 6 4 19 19 C 1.51312 * 101.76492 * 333.36482 * 18 7 6 20 20 H 1.09001 * 110.47197 * 292.28851 * 19 18 7 21 21 C 1.49677 * 110.99678 * 119.87682 * 2 1 3 22 22 H 1.09000 * 109.47011 * 300.12842 * 1 2 3 23 23 H 1.09006 * 109.46892 * 60.12276 * 1 2 3 24 24 H 1.08998 * 109.47379 * 180.12161 * 1 2 3 25 25 H 1.08995 * 110.46164 * 28.67148 * 3 2 1 26 26 H 1.09005 * 111.04745 * 265.14876 * 3 2 1 27 27 H 1.08997 * 110.41579 * 25.20369 * 6 4 3 28 28 H 1.08998 * 110.51404 * 262.79320 * 6 4 3 29 29 H 0.96997 * 119.99690 * 179.71919 * 13 12 10 30 30 H 1.08998 * 110.94069 * 91.60838 * 18 7 6 31 31 H 1.08997 * 110.93997 * 215.30247 * 18 7 6 32 32 H 1.09003 * 110.37857 * 127.12310 * 21 2 1 33 33 H 1.08998 * 110.37869 * 4.76389 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0098 1.3953 0.0000 4 6 3.2756 1.2509 0.8070 5 1 4.0146 0.6770 0.2478 6 6 3.9518 2.3356 1.5982 7 7 4.4926 1.6389 2.8052 8 6 5.2992 2.1779 3.7407 9 8 5.6529 3.3383 3.6437 10 6 5.7498 1.3677 4.8734 11 1 5.5299 0.3107 4.9026 12 6 6.4662 1.9631 5.9191 13 7 6.6130 3.2610 5.9546 14 14 7.2054 0.9024 7.2675 15 1 8.5340 0.4024 6.8315 16 1 7.3618 1.7105 8.5034 17 1 6.3080 -0.2492 7.5392 18 6 3.9804 0.2306 2.7830 19 6 2.6955 0.3820 1.9984 20 1 1.9667 0.9588 2.5678 21 6 2.0053 -0.6961 1.2117 22 1 -0.3633 0.5158 0.8888 23 1 -0.3633 0.5120 -0.8911 24 1 -0.3634 -1.0276 0.0022 25 1 1.3121 2.0744 0.4899 26 1 2.2315 1.7292 -1.0137 27 1 3.2306 3.0987 1.8907 28 1 4.7623 2.7807 1.0210 29 1 7.1057 3.6737 6.6811 30 1 4.6785 -0.4298 2.2686 31 1 3.7801 -0.1270 3.7930 32 1 2.7170 -1.4690 0.9215 33 1 1.1907 -1.1279 1.7930 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706204895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:10 Heat of formation + Delta-G solvation = -28.690224 kcal Electronic energy + Delta-G solvation = -15679.319128 eV Core-core repulsion = 13125.702866 eV Total energy + Delta-G solvation = -2553.616262 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.55291 -38.94416 -36.56081 -34.68160 -32.23490 -31.39548 -28.93598 -27.37790 -27.07531 -23.87793 -21.70745 -21.16264 -20.91918 -18.63602 -17.57526 -17.48397 -16.24745 -16.01491 -15.88711 -15.41639 -14.99870 -14.70977 -14.23467 -13.80134 -13.58336 -13.39736 -13.07449 -12.97439 -12.73210 -12.53365 -12.46588 -12.25983 -12.05789 -12.01497 -11.79013 -11.09158 -10.95650 -9.93937 -9.37660 -9.21389 -8.36234 -6.88397 1.38256 1.40991 1.55396 2.19832 2.40880 2.61237 2.86927 2.91939 3.51376 3.76119 4.02231 4.24326 4.28080 4.31033 4.41288 4.52928 4.57726 4.64218 4.68658 4.79436 4.79842 4.96545 5.04349 5.11087 5.16481 5.28477 5.29545 5.47023 5.76784 5.95495 6.05910 6.32462 6.82663 7.39304 8.39365 8.62041 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052403 B = 0.006671 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.188574 B = 4196.125527 C = 4586.059421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.537 5.537 3 C 0.069 3.931 4 C -0.118 4.118 5 H 0.090 0.910 6 C 0.135 3.865 7 N -0.662 5.662 8 C 0.553 3.447 9 O -0.637 6.637 10 C -0.566 4.566 11 H 0.089 0.911 12 C 0.029 3.971 13 N -0.825 5.825 14 Si 1.001 2.999 15 H -0.261 1.261 16 H -0.272 1.272 17 H -0.246 1.246 18 C 0.140 3.860 19 C -0.134 4.134 20 H 0.064 0.936 21 C 0.069 3.931 22 H 0.024 0.976 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.276 0.724 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 -10.390 -8.117 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.261 5.261 3 C -0.059 4.059 4 C -0.137 4.137 5 H 0.109 0.891 6 C 0.012 3.988 7 N -0.401 5.401 8 C 0.360 3.640 9 O -0.525 6.525 10 C -0.602 4.602 11 H 0.107 0.893 12 C -0.186 4.186 13 N -0.454 5.454 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.169 1.169 18 C 0.018 3.982 19 C -0.155 4.155 20 H 0.083 0.917 21 C -0.059 4.059 22 H 0.043 0.957 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.069 0.931 26 H 0.117 0.883 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.200 -9.837 -8.502 16.525 hybrid contribution 0.243 0.731 1.369 1.571 sum -9.958 -9.106 -7.133 15.263 Atomic orbital electron populations 1.22613 0.86481 1.03018 1.01062 1.65062 1.09321 1.13486 1.38191 1.22201 0.93114 0.90084 1.00466 1.22269 0.98198 0.97088 0.96188 0.89144 1.20802 0.96374 0.94733 0.86931 1.49986 1.52554 1.12627 1.24931 1.18479 0.77169 0.86332 0.81990 1.90540 1.62238 1.20759 1.78943 1.21369 1.37881 0.96553 1.04436 0.89270 1.27039 0.94218 0.96246 1.01111 1.70157 1.32040 1.12857 1.30383 0.84997 0.79147 0.78307 0.75621 1.18575 1.19634 1.16926 1.21384 0.93218 0.83496 1.00145 1.22742 0.96361 0.99721 0.96632 0.91723 1.22094 0.99321 0.95226 0.89233 0.95719 0.90369 0.89881 0.93074 0.88277 0.94349 0.93875 0.91382 0.91251 0.91275 0.88977 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.24 127.69 1.18 1.46 16 2 N -0.54 -11.42 5.56 -916.66 -5.09 -16.51 16 3 C 0.07 1.60 6.55 85.06 0.56 2.16 16 4 C -0.12 -3.48 2.92 -10.42 -0.03 -3.51 16 5 H 0.09 2.66 8.13 -2.39 -0.02 2.64 16 6 C 0.13 5.49 6.80 84.94 0.58 6.07 16 7 N -0.66 -31.98 3.43 -818.26 -2.81 -34.79 16 8 C 0.55 33.83 7.78 86.36 0.67 34.50 16 9 O -0.64 -44.89 15.49 -4.32 -0.07 -44.96 16 10 C -0.57 -32.93 8.98 24.83 0.22 -32.71 16 11 H 0.09 4.65 6.79 -2.91 -0.02 4.63 16 12 C 0.03 1.64 5.48 85.30 0.47 2.10 16 13 N -0.83 -51.53 11.91 21.83 0.26 -51.27 16 14 Si 1.00 41.29 29.56 68.60 2.03 43.32 16 15 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 17 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 18 C 0.14 5.10 6.39 85.17 0.54 5.64 16 19 C -0.13 -3.87 2.98 -10.28 -0.03 -3.90 16 20 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 21 C 0.07 1.48 6.72 84.87 0.57 2.05 16 22 H 0.02 0.42 8.11 -2.39 -0.02 0.40 16 23 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.05 1.20 7.84 -2.39 -0.02 1.18 16 26 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.28 15.56 8.29 -92.71 -0.77 14.79 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.07 2.56 7.29 -2.39 -0.02 2.54 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 1.48 7.65 -2.39 -0.02 1.47 16 Total: -1.00 -77.26 270.36 0.14 -77.12 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.08 Total: 13.23 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 4.73 Total: 13.86 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -7.64 Total: -102.57 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -0.07 Total: -44.96 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -77.26 0.14 -77.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706204895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.430 kcal (2) G-P(sol) polarization free energy of solvation -77.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds