Wall clock time and date at job start Mon Mar 30 2020 03:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.49670 * 110.99702 * 2 1 4 4 C 1.50266 * 104.75755 * 114.05874 * 3 2 1 5 5 H 1.09000 * 110.55433 * 279.45270 * 4 3 2 6 6 C 1.51033 * 125.93127 * 142.68749 * 4 3 2 7 7 N 1.49874 * 101.89814 * 204.89118 * 6 4 3 8 8 C 1.34774 * 126.19598 * 206.24186 * 7 6 4 9 9 O 1.21683 * 120.00444 * 359.97438 * 8 7 6 10 10 C 1.46382 * 119.99501 * 179.97438 * 8 7 6 11 11 H 1.08002 * 119.99760 * 359.97438 * 10 8 7 12 12 C 1.40047 * 119.99800 * 180.27774 * 10 8 7 13 13 N 1.30674 * 120.00002 * 359.72267 * 12 10 8 14 14 Si 1.86801 * 119.99850 * 179.72342 * 12 10 8 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47021 * 119.99739 * 14 12 10 17 17 H 1.48501 * 109.47039 * 240.00155 * 14 12 10 18 18 C 1.49489 * 107.59702 * 26.50791 * 7 6 4 19 19 C 1.50247 * 104.59644 * 6.98982 * 18 7 6 20 20 H 1.08994 * 109.97730 * 79.94095 * 19 18 7 21 21 C 1.50160 * 110.99976 * 119.66605 * 2 1 3 22 22 H 1.09005 * 109.47035 * 300.33602 * 1 2 3 23 23 H 1.08998 * 109.47212 * 60.33357 * 1 2 3 24 24 H 1.09000 * 109.46996 * 180.33148 * 1 2 3 25 25 H 1.08998 * 110.38577 * 355.23695 * 3 2 1 26 26 H 1.09002 * 110.38291 * 232.87675 * 3 2 1 27 27 H 1.08999 * 110.94673 * 86.74041 * 6 4 3 28 28 H 1.09008 * 110.97470 * 323.05404 * 6 4 3 29 29 H 0.96995 * 119.99831 * 179.97438 * 13 12 10 30 30 H 1.08999 * 110.41946 * 125.88113 * 18 7 6 31 31 H 1.09003 * 110.41267 * 248.34026 * 18 7 6 32 32 H 1.08997 * 110.87685 * 94.80974 * 21 2 1 33 33 H 1.09006 * 111.05303 * 331.19778 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0054 1.3973 0.0000 4 6 2.6956 1.5424 1.3269 5 1 1.9713 1.7512 2.1142 6 6 3.9773 2.2998 1.5810 7 7 4.5012 1.6176 2.8084 8 6 5.3141 2.1614 3.7356 9 8 5.6903 3.3123 3.6151 10 6 5.7445 1.3675 4.8876 11 1 5.4103 0.3461 4.9947 12 6 6.5846 1.9344 5.8541 13 7 6.9886 3.1703 5.7248 14 14 7.1276 0.9236 7.3282 15 1 6.5363 -0.4357 7.2413 16 1 8.6090 0.8198 7.3386 17 1 6.6688 1.5835 8.5770 18 6 3.9638 0.2226 2.8142 19 6 3.2755 0.0764 1.4867 20 1 4.0097 -0.1247 0.7067 21 6 2.0072 -0.6938 1.2181 22 1 -0.3633 0.5191 0.8870 23 1 -0.3633 0.5086 -0.8929 24 1 -0.3633 -1.0277 0.0059 25 1 1.1908 2.1166 -0.0848 26 1 2.7171 1.5308 -0.8147 27 1 3.7755 3.3528 1.7767 28 1 4.6696 2.1862 0.7467 29 1 7.5701 3.5631 6.3944 30 1 4.7768 -0.4978 2.9041 31 1 3.2489 0.0940 3.6271 32 1 2.2261 -1.7400 1.0043 33 1 1.3153 -0.6070 2.0559 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706204896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:12 Heat of formation + Delta-G solvation = -2.327970 kcal Electronic energy + Delta-G solvation = -15675.744392 eV Core-core repulsion = 13123.271283 eV Total energy + Delta-G solvation = -2552.473109 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.21981 -37.02125 -34.92919 -32.49802 -30.71266 -30.14101 -27.13505 -26.13108 -25.37975 -22.54859 -20.13565 -20.02513 -19.15341 -16.70992 -16.13572 -15.50062 -15.03281 -14.59922 -14.23511 -13.82565 -13.66899 -13.28707 -12.80867 -12.35614 -11.92187 -11.85135 -11.59555 -11.48981 -11.14473 -11.07397 -10.97356 -10.77923 -10.49889 -10.38980 -10.16611 -9.78074 -8.87531 -8.44031 -7.64070 -7.24743 -6.20930 -4.65573 3.12055 3.20051 3.24690 3.88432 4.03342 4.14073 4.37483 4.54820 4.90091 5.20992 5.27895 5.35109 5.37717 5.56401 5.66600 5.73214 5.76623 5.80093 5.81487 5.92892 6.03889 6.22571 6.34795 6.41432 6.57878 6.65999 6.75081 6.97202 7.18738 7.42788 8.07507 8.38704 9.00855 9.46910 10.56237 10.75238 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052714 B = 0.006661 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.039333 B = 4202.528269 C = 4603.033584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.061 3.939 4 C -0.146 4.146 5 H 0.077 0.923 6 C 0.137 3.863 7 N -0.651 5.651 8 C 0.572 3.428 9 O -0.576 6.576 10 C -0.538 4.538 11 H 0.070 0.930 12 C 0.086 3.914 13 N -0.769 5.769 14 Si 0.909 3.091 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.276 1.276 18 C 0.144 3.856 19 C -0.132 4.132 20 H 0.086 0.914 21 C 0.062 3.938 22 H 0.026 0.974 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.268 0.732 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 -7.451 -7.599 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.256 5.256 3 C -0.067 4.067 4 C -0.167 4.167 5 H 0.095 0.905 6 C 0.013 3.987 7 N -0.393 5.393 8 C 0.379 3.621 9 O -0.459 6.459 10 C -0.574 4.574 11 H 0.088 0.912 12 C -0.133 4.133 13 N -0.397 5.397 14 Si 0.733 3.267 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.201 1.201 18 C 0.019 3.981 19 C -0.151 4.151 20 H 0.104 0.896 21 C -0.066 4.066 22 H 0.045 0.955 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.625 -6.872 -7.976 14.265 hybrid contribution -0.116 -0.133 1.461 1.472 sum -9.741 -7.005 -6.515 13.653 Atomic orbital electron populations 1.22517 0.88233 1.01819 1.00533 1.65261 1.07772 1.14106 1.38449 1.22067 0.98810 0.88989 0.96835 1.22784 0.97975 0.97819 0.98084 0.90480 1.21068 0.91395 0.96858 0.89359 1.50119 1.53637 1.11098 1.24411 1.18074 0.76490 0.86568 0.81003 1.90610 1.58735 1.18893 1.77639 1.20925 1.31215 0.99366 1.05940 0.91220 1.25741 0.94465 0.94652 0.98470 1.70033 1.25306 1.12470 1.31928 0.86300 0.78775 0.80561 0.81061 1.18726 1.20087 1.20138 1.20768 0.96832 0.86476 0.93995 1.22445 0.97154 0.95777 0.99767 0.89550 1.22285 0.94782 0.98315 0.91181 0.95522 0.91484 0.91478 0.92054 0.89981 0.91475 0.93044 0.92105 0.91847 0.93002 0.89834 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.24 60.07 0.56 0.74 16 2 N -0.53 -6.56 5.58 -240.60 -1.34 -7.90 16 3 C 0.06 0.77 6.71 -3.64 -0.02 0.75 16 4 C -0.15 -2.27 2.97 -89.96 -0.27 -2.54 16 5 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 6 C 0.14 2.69 6.79 -3.15 -0.02 2.67 16 7 N -0.65 -15.32 3.43 -172.81 -0.59 -15.91 16 8 C 0.57 16.81 7.81 -12.99 -0.10 16.70 16 9 O -0.58 -19.21 15.36 5.20 0.08 -19.13 16 10 C -0.54 -15.42 9.09 -35.63 -0.32 -15.74 16 11 H 0.07 1.84 7.14 -52.49 -0.37 1.47 16 12 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 13 N -0.77 -23.29 11.83 55.55 0.66 -22.63 16 14 Si 0.91 20.24 29.56 -169.99 -5.02 15.22 16 15 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 C 0.14 2.68 6.04 -3.75 -0.02 2.66 16 19 C -0.13 -1.99 2.91 -90.08 -0.26 -2.25 16 20 H 0.09 1.34 8.13 -51.93 -0.42 0.91 16 21 C 0.06 0.77 6.55 -3.10 -0.02 0.75 16 22 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 23 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 28 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 29 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 30 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.64 7.88 -51.93 -0.41 0.23 16 LS Contribution 271.06 15.07 4.08 4.08 Total: -1.00 -34.07 271.06 -7.68 -41.75 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.96 Total: -1.56 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.58 Total: 6.07 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -1.28 Total: -46.44 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.08 Total: -19.13 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.07 -7.68 -41.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706204896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.424 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds