Wall clock time and date at job start Mon Mar 30 2020 03:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.49670 * 110.99702 * 2 1 4 4 C 1.50266 * 104.75755 * 114.05874 * 3 2 1 5 5 H 1.09000 * 110.55433 * 279.45270 * 4 3 2 6 6 C 1.51033 * 125.93127 * 142.68749 * 4 3 2 7 7 N 1.49874 * 101.89814 * 204.89118 * 6 4 3 8 8 C 1.34774 * 126.19598 * 206.24186 * 7 6 4 9 9 O 1.21683 * 120.00444 * 359.97438 * 8 7 6 10 10 C 1.46382 * 119.99501 * 179.97438 * 8 7 6 11 11 H 1.08002 * 119.99760 * 359.97438 * 10 8 7 12 12 C 1.40047 * 119.99800 * 180.27774 * 10 8 7 13 13 N 1.30674 * 120.00002 * 359.72267 * 12 10 8 14 14 Si 1.86801 * 119.99850 * 179.72342 * 12 10 8 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47021 * 119.99739 * 14 12 10 17 17 H 1.48501 * 109.47039 * 240.00155 * 14 12 10 18 18 C 1.49489 * 107.59702 * 26.50791 * 7 6 4 19 19 C 1.50247 * 104.59644 * 6.98982 * 18 7 6 20 20 H 1.08994 * 109.97730 * 79.94095 * 19 18 7 21 21 C 1.50160 * 110.99976 * 119.66605 * 2 1 3 22 22 H 1.09005 * 109.47035 * 300.33602 * 1 2 3 23 23 H 1.08998 * 109.47212 * 60.33357 * 1 2 3 24 24 H 1.09000 * 109.46996 * 180.33148 * 1 2 3 25 25 H 1.08998 * 110.38577 * 355.23695 * 3 2 1 26 26 H 1.09002 * 110.38291 * 232.87675 * 3 2 1 27 27 H 1.08999 * 110.94673 * 86.74041 * 6 4 3 28 28 H 1.09008 * 110.97470 * 323.05404 * 6 4 3 29 29 H 0.96995 * 119.99831 * 179.97438 * 13 12 10 30 30 H 1.08999 * 110.41946 * 125.88113 * 18 7 6 31 31 H 1.09003 * 110.41267 * 248.34026 * 18 7 6 32 32 H 1.08997 * 110.87685 * 94.80974 * 21 2 1 33 33 H 1.09006 * 111.05303 * 331.19778 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0054 1.3973 0.0000 4 6 2.6956 1.5424 1.3269 5 1 1.9713 1.7512 2.1142 6 6 3.9773 2.2998 1.5810 7 7 4.5012 1.6176 2.8084 8 6 5.3141 2.1614 3.7356 9 8 5.6903 3.3123 3.6151 10 6 5.7445 1.3675 4.8876 11 1 5.4103 0.3461 4.9947 12 6 6.5846 1.9344 5.8541 13 7 6.9886 3.1703 5.7248 14 14 7.1276 0.9236 7.3282 15 1 6.5363 -0.4357 7.2413 16 1 8.6090 0.8198 7.3386 17 1 6.6688 1.5835 8.5770 18 6 3.9638 0.2226 2.8142 19 6 3.2755 0.0764 1.4867 20 1 4.0097 -0.1247 0.7067 21 6 2.0072 -0.6938 1.2181 22 1 -0.3633 0.5191 0.8870 23 1 -0.3633 0.5086 -0.8929 24 1 -0.3633 -1.0277 0.0059 25 1 1.1908 2.1166 -0.0848 26 1 2.7171 1.5308 -0.8147 27 1 3.7755 3.3528 1.7767 28 1 4.6696 2.1862 0.7467 29 1 7.5701 3.5631 6.3944 30 1 4.7768 -0.4978 2.9041 31 1 3.2489 0.0940 3.6271 32 1 2.2261 -1.7400 1.0043 33 1 1.3153 -0.6070 2.0559 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706204896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:12 Heat of formation + Delta-G solvation = -28.330990 kcal Electronic energy + Delta-G solvation = -15676.871968 eV Core-core repulsion = 13123.271283 eV Total energy + Delta-G solvation = -2553.600685 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.54539 -38.92943 -36.54751 -34.67447 -32.20786 -31.43982 -28.89697 -27.43343 -27.02713 -23.88133 -21.44248 -21.32726 -21.01556 -18.60948 -17.58239 -17.50148 -16.23801 -15.98549 -15.83523 -15.41223 -15.01260 -14.72974 -14.24318 -13.75341 -13.64993 -13.31383 -13.11697 -12.86132 -12.74865 -12.61559 -12.43788 -12.31401 -12.03495 -11.97787 -11.76878 -11.11340 -10.98136 -9.93575 -9.38723 -9.19266 -8.33302 -6.89580 1.38170 1.38502 1.56936 2.19920 2.41007 2.61806 2.87358 2.91573 3.51939 3.75642 4.02350 4.21321 4.27654 4.32149 4.45919 4.54606 4.57742 4.64670 4.71162 4.76918 4.80463 4.94614 5.05010 5.10863 5.18468 5.28800 5.30259 5.45408 5.75689 5.95559 6.05544 6.32792 6.82607 7.39953 8.39996 8.62931 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052714 B = 0.006661 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.039333 B = 4202.528269 C = 4603.033584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.535 5.535 3 C 0.067 3.933 4 C -0.134 4.134 5 H 0.068 0.932 6 C 0.133 3.867 7 N -0.662 5.662 8 C 0.551 3.449 9 O -0.634 6.634 10 C -0.563 4.563 11 H 0.087 0.913 12 C 0.027 3.973 13 N -0.823 5.823 14 Si 1.001 2.999 15 H -0.246 1.246 16 H -0.267 1.267 17 H -0.267 1.267 18 C 0.141 3.859 19 C -0.118 4.118 20 H 0.086 0.914 21 C 0.069 3.931 22 H 0.025 0.975 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.276 0.724 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.449 -9.944 -7.688 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.259 5.259 3 C -0.060 4.060 4 C -0.154 4.154 5 H 0.086 0.914 6 C 0.010 3.990 7 N -0.402 5.402 8 C 0.358 3.642 9 O -0.521 6.521 10 C -0.600 4.600 11 H 0.105 0.895 12 C -0.188 4.188 13 N -0.453 5.453 14 Si 0.819 3.181 15 H -0.168 1.168 16 H -0.191 1.191 17 H -0.192 1.192 18 C 0.018 3.982 19 C -0.138 4.138 20 H 0.104 0.896 21 C -0.058 4.058 22 H 0.044 0.956 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.969 -9.413 -8.113 16.576 hybrid contribution 0.243 0.661 1.413 1.578 sum -10.726 -8.752 -6.701 15.380 Atomic orbital electron populations 1.22617 0.86528 1.03003 1.01113 1.65310 1.09384 1.13232 1.38018 1.22074 0.99157 0.90031 0.94786 1.22608 0.95848 0.97036 0.99892 0.91378 1.21175 0.93803 0.95991 0.88062 1.49978 1.52375 1.13474 1.24327 1.18473 0.77116 0.86197 0.82394 1.90548 1.61175 1.21111 1.79313 1.21417 1.31905 1.00204 1.06442 0.89477 1.27052 0.93788 0.95855 1.02100 1.70202 1.26248 1.15071 1.33749 0.84934 0.78487 0.78943 0.75703 1.16846 1.19134 1.19199 1.20917 0.97122 0.83660 0.96456 1.22330 0.98163 0.96018 0.97250 0.89577 1.22312 0.93013 0.98890 0.91594 0.95609 0.90257 0.90048 0.90475 0.89541 0.93845 0.92437 0.91455 0.91841 0.92591 0.87915 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.24 127.69 1.18 1.44 16 2 N -0.54 -11.37 5.58 -915.12 -5.11 -16.47 16 3 C 0.07 1.55 6.71 84.88 0.57 2.12 16 4 C -0.13 -4.01 2.97 -10.36 -0.03 -4.04 16 5 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 6 C 0.13 5.35 6.79 85.08 0.58 5.93 16 7 N -0.66 -31.97 3.43 -818.87 -2.81 -34.78 16 8 C 0.55 33.70 7.81 86.36 0.67 34.37 16 9 O -0.63 -44.58 15.36 -4.29 -0.07 -44.64 16 10 C -0.56 -32.88 9.09 24.83 0.23 -32.65 16 11 H 0.09 4.59 7.14 -2.91 -0.02 4.57 16 12 C 0.03 1.53 5.50 85.30 0.47 2.00 16 13 N -0.82 -51.48 11.83 21.84 0.26 -51.22 16 14 Si 1.00 41.40 29.56 68.60 2.03 43.43 16 15 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 16 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 18 C 0.14 5.19 6.04 84.91 0.51 5.70 16 19 C -0.12 -3.34 2.91 -10.44 -0.03 -3.37 16 20 H 0.09 2.49 8.13 -2.39 -0.02 2.47 16 21 C 0.07 1.50 6.55 84.95 0.56 2.06 16 22 H 0.03 0.43 8.12 -2.38 -0.02 0.41 16 23 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.56 7.65 -2.39 -0.02 1.54 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 1.92 8.09 -2.39 -0.02 1.90 16 28 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.28 15.48 8.29 -92.71 -0.77 14.71 16 30 H 0.06 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.22 7.88 -2.38 -0.02 1.20 16 Total: -1.00 -77.14 271.06 0.09 -77.05 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 1.08 Total: 13.09 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 4.71 Total: 13.56 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -7.66 Total: -102.48 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.07 Total: -44.64 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -77.14 0.09 -77.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706204896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.718 kcal (2) G-P(sol) polarization free energy of solvation -77.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds