Wall clock time and date at job start Mon Mar 30 2020 02:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46764 * 2 1 4 4 H 1.09007 * 109.47381 * 304.33475 * 3 2 1 5 5 C 1.50704 * 109.47320 * 184.33653 * 3 2 1 6 6 H 1.07996 * 119.99948 * 240.00096 * 5 3 2 7 7 C 1.37877 * 119.99634 * 59.99821 * 5 3 2 8 8 N 1.31508 * 120.00461 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99617 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47269 * 89.99984 * 9 7 5 11 11 H 1.48496 * 109.47084 * 210.00330 * 9 7 5 12 12 H 1.48501 * 109.47191 * 329.99935 * 9 7 5 13 13 N 1.46898 * 109.47259 * 64.33656 * 3 2 1 14 14 C 1.46907 * 111.00344 * 205.79616 * 13 3 2 15 15 C 1.50692 * 109.47289 * 174.88370 * 14 13 3 16 16 N 1.30179 * 126.80387 * 90.02456 * 15 14 13 17 17 O 1.20922 * 111.60685 * 179.97438 * 16 15 14 18 18 C 1.34041 * 111.56683 * 359.97438 * 17 16 15 19 19 C 1.35458 * 106.44504 * 359.74905 * 18 17 16 20 20 C 1.50699 * 128.00601 * 180.22941 * 19 18 17 21 21 H 1.08999 * 109.47041 * 174.10058 * 1 2 3 22 22 H 1.08999 * 109.47328 * 294.09772 * 1 2 3 23 23 H 1.08993 * 109.47612 * 54.09846 * 1 2 3 24 24 H 1.08998 * 109.47365 * 240.00672 * 2 1 3 25 25 H 1.08994 * 109.47412 * 119.99768 * 2 1 3 26 26 H 0.96996 * 120.00361 * 180.02562 * 8 7 5 27 27 H 1.00900 * 111.00217 * 81.83919 * 13 3 2 28 28 H 1.09001 * 109.46523 * 294.88410 * 14 13 3 29 29 H 1.08997 * 109.46845 * 54.87825 * 14 13 3 30 30 H 1.07997 * 126.78089 * 180.02562 * 18 17 16 31 31 H 1.08996 * 109.47789 * 270.17159 * 20 19 18 32 32 H 1.09005 * 109.46769 * 30.17425 * 20 19 18 33 33 H 1.08997 * 109.47076 * 150.16797 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6145 1.9783 -0.8486 5 6 3.5431 1.4440 -0.1074 6 1 4.1398 1.8916 0.6735 7 6 4.1564 0.8739 -1.2028 8 7 3.4298 0.3292 -2.1540 9 14 6.0197 0.8751 -1.3356 10 1 6.5619 -0.3544 -0.7035 11 1 6.4139 0.9111 -2.7668 12 1 6.5647 2.0698 -0.6420 13 7 1.6376 2.1041 1.2483 14 6 1.5422 3.5588 1.0663 15 6 1.0080 4.1888 2.3266 16 7 1.7044 4.6238 3.3368 17 8 0.9949 5.0791 4.2037 18 6 -0.3012 5.0028 3.8703 19 6 -0.3484 4.4311 2.6432 20 6 -1.5654 4.1212 1.8101 21 1 -0.3633 -1.0222 -0.1056 22 1 -0.3634 0.4196 0.9381 23 1 -0.3634 0.6026 -0.8324 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8613 -0.0722 -2.9243 27 1 2.2707 1.8745 1.9996 28 1 2.5308 3.9632 0.8487 29 1 0.8695 3.7778 0.2371 30 1 -1.1416 5.3360 4.4611 31 1 -1.9221 3.1188 2.0465 32 1 -2.3492 4.8467 2.0281 33 1 -1.3051 4.1743 0.7530 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708424634.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:40 Heat of formation + Delta-G solvation = 46.211529 kcal Electronic energy + Delta-G solvation = -15439.290767 eV Core-core repulsion = 12888.922489 eV Total energy + Delta-G solvation = -2550.368278 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.62438 -36.54455 -34.68447 -32.64084 -31.74046 -30.72916 -27.93496 -27.02598 -24.80469 -22.56589 -21.35198 -20.63285 -19.54040 -17.27052 -17.19354 -16.61530 -14.85043 -14.66245 -14.26121 -13.79901 -13.18255 -13.10855 -12.94897 -12.57982 -12.18405 -12.02192 -11.69341 -11.21849 -11.11823 -10.97940 -10.79588 -10.61853 -10.20987 -9.82226 -9.62984 -9.38746 -9.12822 -9.09977 -8.40818 -7.34602 -6.02554 -4.15376 1.75492 2.54023 3.26738 3.33721 3.37558 3.52702 4.38288 4.53306 4.84079 5.10133 5.22992 5.37654 5.63226 5.70801 5.76149 5.90627 6.03378 6.21493 6.34559 6.40831 6.47692 6.51301 6.68213 7.07870 7.14394 7.38692 7.54216 7.75051 8.03206 8.08928 8.26282 8.56722 8.60971 8.95973 9.52626 10.97878 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031623 B = 0.007426 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.213268 B = 3769.781270 C = 4419.913996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.140 3.860 15 C 0.037 3.963 16 N -0.366 5.366 17 O 0.092 5.908 18 C -0.084 4.084 19 C -0.184 4.184 20 C -0.073 4.073 21 H 0.025 0.975 22 H 0.045 0.955 23 H 0.037 0.963 24 H 0.092 0.908 25 H 0.031 0.969 26 H 0.262 0.738 27 H 0.331 0.669 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.210 0.790 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 6.624 7.308 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.588 4.588 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.311 5.311 14 C 0.010 3.990 15 C -0.122 4.122 16 N -0.072 5.072 17 O 0.027 5.973 18 C -0.166 4.166 19 C -0.188 4.188 20 C -0.130 4.130 21 H 0.044 0.956 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.110 0.890 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.226 0.774 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.598 6.482 7.281 12.998 hybrid contribution 1.227 0.089 -0.459 1.313 sum -7.370 6.571 6.822 12.001 Atomic orbital electron populations 1.21683 0.98936 0.98337 1.00316 1.21495 0.92139 0.99010 1.01792 1.19183 0.92877 0.91241 0.85815 0.94811 1.21877 0.92666 1.38274 1.05943 0.92784 1.24915 0.98063 0.94866 0.95554 1.69867 1.34938 1.37968 1.09533 0.86641 0.85964 0.78488 0.77214 1.20581 1.21139 1.20031 1.60919 1.55623 1.04288 1.10287 1.20087 0.99320 0.90307 0.89293 1.23823 0.90464 1.00247 0.97690 1.73852 1.19062 1.14501 0.99741 1.84793 1.14933 1.60296 1.37291 1.25645 0.88169 1.05078 0.97669 1.21325 0.96320 1.04469 0.96646 1.20048 0.92273 1.01781 0.98895 0.95629 0.93556 0.94385 0.89025 0.95052 0.92820 0.85286 0.93566 0.89927 0.77380 0.90631 0.91796 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.72 37.16 0.36 -2.37 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.31 1.98 -68.86 -0.14 5.17 16 4 H 0.03 0.90 7.71 -51.92 -0.40 0.50 16 5 C -0.55 -14.88 8.47 -34.44 -0.29 -15.17 16 6 H 0.05 1.49 7.73 -52.49 -0.41 1.08 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -24.83 11.30 55.43 0.63 -24.21 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.68 -14.53 5.74 -109.22 -0.63 -15.16 16 14 C 0.14 2.74 6.01 -4.98 -0.03 2.71 16 15 C 0.04 0.66 6.88 -82.10 -0.57 0.09 16 16 N -0.37 -6.63 12.07 33.42 0.40 -6.23 16 17 O 0.09 1.39 11.20 17.17 0.19 1.59 16 18 C -0.08 -1.01 12.26 29.74 0.36 -0.65 16 19 C -0.18 -2.60 6.32 -104.42 -0.66 -3.26 16 20 C -0.07 -0.84 10.37 36.01 0.37 -0.46 16 21 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.33 7.36 8.45 -39.29 -0.33 7.03 16 28 H 0.05 0.99 8.11 -51.93 -0.42 0.57 16 29 H 0.08 1.53 7.44 -51.93 -0.39 1.15 16 30 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.88 7.65 -51.93 -0.40 0.49 16 LS Contribution 281.96 15.07 4.25 4.25 Total: -1.00 -29.02 281.96 -5.73 -34.76 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.73 Total: 3.52 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.82 Total: -14.81 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.40 Total: -45.60 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.02 -5.73 -34.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708424634.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.970 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds