Wall clock time and date at job start Mon Mar 30 2020 02:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46764 * 2 1 4 4 H 1.09007 * 109.47381 * 304.33475 * 3 2 1 5 5 C 1.50704 * 109.47320 * 184.33653 * 3 2 1 6 6 H 1.07996 * 119.99948 * 240.00096 * 5 3 2 7 7 C 1.37877 * 119.99634 * 59.99821 * 5 3 2 8 8 N 1.31508 * 120.00461 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99617 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47269 * 89.99984 * 9 7 5 11 11 H 1.48496 * 109.47084 * 210.00330 * 9 7 5 12 12 H 1.48501 * 109.47191 * 329.99935 * 9 7 5 13 13 N 1.46898 * 109.47259 * 64.33656 * 3 2 1 14 14 C 1.46907 * 111.00344 * 205.79616 * 13 3 2 15 15 C 1.50692 * 109.47289 * 174.88370 * 14 13 3 16 16 N 1.30179 * 126.80387 * 90.02456 * 15 14 13 17 17 O 1.20922 * 111.60685 * 179.97438 * 16 15 14 18 18 C 1.34041 * 111.56683 * 359.97438 * 17 16 15 19 19 C 1.35458 * 106.44504 * 359.74905 * 18 17 16 20 20 C 1.50699 * 128.00601 * 180.22941 * 19 18 17 21 21 H 1.08999 * 109.47041 * 174.10058 * 1 2 3 22 22 H 1.08999 * 109.47328 * 294.09772 * 1 2 3 23 23 H 1.08993 * 109.47612 * 54.09846 * 1 2 3 24 24 H 1.08998 * 109.47365 * 240.00672 * 2 1 3 25 25 H 1.08994 * 109.47412 * 119.99768 * 2 1 3 26 26 H 0.96996 * 120.00361 * 180.02562 * 8 7 5 27 27 H 1.00900 * 111.00217 * 81.83919 * 13 3 2 28 28 H 1.09001 * 109.46523 * 294.88410 * 14 13 3 29 29 H 1.08997 * 109.46845 * 54.87825 * 14 13 3 30 30 H 1.07997 * 126.78089 * 180.02562 * 18 17 16 31 31 H 1.08996 * 109.47789 * 270.17159 * 20 19 18 32 32 H 1.09005 * 109.46769 * 30.17425 * 20 19 18 33 33 H 1.08997 * 109.47076 * 150.16797 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6145 1.9783 -0.8486 5 6 3.5431 1.4440 -0.1074 6 1 4.1398 1.8916 0.6735 7 6 4.1564 0.8739 -1.2028 8 7 3.4298 0.3292 -2.1540 9 14 6.0197 0.8751 -1.3356 10 1 6.5619 -0.3544 -0.7035 11 1 6.4139 0.9111 -2.7668 12 1 6.5647 2.0698 -0.6420 13 7 1.6376 2.1041 1.2483 14 6 1.5422 3.5588 1.0663 15 6 1.0080 4.1888 2.3266 16 7 1.7044 4.6238 3.3368 17 8 0.9949 5.0791 4.2037 18 6 -0.3012 5.0028 3.8703 19 6 -0.3484 4.4311 2.6432 20 6 -1.5654 4.1212 1.8101 21 1 -0.3633 -1.0222 -0.1056 22 1 -0.3634 0.4196 0.9381 23 1 -0.3634 0.6026 -0.8324 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8613 -0.0722 -2.9243 27 1 2.2707 1.8745 1.9996 28 1 2.5308 3.9632 0.8487 29 1 0.8695 3.7778 0.2371 30 1 -1.1416 5.3360 4.4611 31 1 -1.9221 3.1188 2.0465 32 1 -2.3492 4.8467 2.0281 33 1 -1.3051 4.1743 0.7530 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708424634.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:40 Heat of formation + Delta-G solvation = 27.358205 kcal Electronic energy + Delta-G solvation = -15440.108309 eV Core-core repulsion = 12888.922489 eV Total energy + Delta-G solvation = -2551.185820 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.85194 -38.30595 -36.07773 -34.28842 -33.36049 -32.33589 -29.08620 -28.70940 -26.58162 -24.39720 -22.51855 -21.89502 -21.44133 -18.85962 -18.52169 -18.22377 -16.84508 -16.01202 -15.86984 -15.58330 -14.78288 -14.33971 -14.10757 -13.97134 -13.63743 -13.47518 -13.16038 -13.12572 -12.96192 -12.73122 -12.52303 -12.15126 -11.95602 -11.55022 -11.53806 -11.08017 -10.83637 -10.50587 -10.16922 -9.20254 -8.11243 -6.32692 0.69483 1.30325 1.34782 1.36566 1.45598 2.36605 2.56055 3.09013 3.23895 3.67876 3.83705 4.10328 4.36240 4.48734 4.62317 4.71445 4.76491 4.87118 4.92571 4.94246 4.98504 5.09881 5.14539 5.41513 5.46183 5.47788 5.59293 5.72933 6.04992 6.11044 6.28687 6.63879 6.89937 7.38424 7.45713 8.86104 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031623 B = 0.007426 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.213268 B = 3769.781270 C = 4419.913996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 C 0.224 3.776 4 H 0.009 0.991 5 C -0.567 4.567 6 H 0.042 0.958 7 C 0.025 3.975 8 N -0.906 5.906 9 Si 0.948 3.052 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.278 1.278 13 N -0.666 5.666 14 C 0.148 3.852 15 C 0.009 3.991 16 N -0.401 5.401 17 O 0.095 5.905 18 C -0.055 4.055 19 C -0.198 4.198 20 C -0.070 4.070 21 H 0.044 0.956 22 H 0.056 0.944 23 H 0.036 0.964 24 H 0.064 0.936 25 H 0.024 0.976 26 H 0.264 0.736 27 H 0.325 0.675 28 H 0.018 0.982 29 H 0.087 0.913 30 H 0.266 0.734 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 7.190 8.500 15.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.027 0.973 5 C -0.606 4.606 6 H 0.060 0.940 7 C -0.176 4.176 8 N -0.544 5.544 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.204 1.204 12 H -0.203 1.203 13 N -0.296 5.296 14 C 0.018 3.982 15 C -0.149 4.149 16 N -0.106 5.106 17 O 0.029 5.971 18 C -0.136 4.136 19 C -0.202 4.202 20 C -0.127 4.127 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.036 0.964 29 H 0.106 0.894 30 H 0.282 0.718 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.031 7.044 8.463 14.895 hybrid contribution 1.624 -0.025 -0.772 1.798 sum -8.407 7.019 7.691 13.383 Atomic orbital electron populations 1.21533 0.95928 0.99707 1.00793 1.21355 0.94800 0.97857 1.00047 1.18980 0.91468 0.91791 0.86220 0.97302 1.22141 0.94183 1.38414 1.05911 0.93962 1.25594 1.02073 0.94582 0.95302 1.69972 1.36409 1.38243 1.09826 0.85715 0.81140 0.78339 0.77379 1.19971 1.20357 1.20292 1.60868 1.54630 1.05489 1.08593 1.19916 0.98106 0.89017 0.91194 1.23660 0.92487 1.01667 0.97093 1.73845 1.20534 1.15729 1.00484 1.84742 1.16447 1.59520 1.36401 1.26602 0.87780 1.02240 0.96968 1.21645 0.95399 1.05194 0.98005 1.20113 0.92055 1.02867 0.97660 0.93654 0.92510 0.94522 0.91769 0.95666 0.92631 0.85938 0.96423 0.89446 0.71824 0.90639 0.88270 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 9.72 71.98 0.70 -4.11 16 2 C -0.10 -4.90 5.45 30.59 0.17 -4.73 16 3 C 0.22 11.27 1.98 44.17 0.09 11.36 16 4 H 0.01 0.50 7.71 -2.38 -0.02 0.48 16 5 C -0.57 -31.64 8.47 25.60 0.22 -31.42 16 6 H 0.04 2.40 7.73 -2.91 -0.02 2.38 16 7 C 0.03 1.40 5.29 84.66 0.45 1.85 16 8 N -0.91 -51.63 11.30 21.45 0.24 -51.39 16 9 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 N -0.67 -29.07 5.74 -499.45 -2.87 -31.94 16 14 C 0.15 5.96 6.01 85.55 0.51 6.47 16 15 C 0.01 0.31 6.88 43.57 0.30 0.61 16 16 N -0.40 -14.39 12.07 -49.55 -0.60 -14.99 16 17 O 0.10 2.70 11.20 71.62 0.80 3.50 16 18 C -0.06 -1.11 12.26 67.18 0.82 -0.29 16 19 C -0.20 -5.15 6.32 -19.73 -0.12 -5.28 16 20 C -0.07 -1.42 10.37 71.24 0.74 -0.68 16 21 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.06 2.10 7.90 -2.39 -0.02 2.08 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 3.46 5.97 -2.39 -0.01 3.44 16 25 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.33 14.85 8.45 -89.69 -0.76 14.09 16 28 H 0.02 0.79 8.11 -2.39 -0.02 0.78 16 29 H 0.09 3.36 7.44 -2.39 -0.02 3.34 16 30 H 0.27 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.06 1.37 7.65 -2.39 -0.02 1.35 16 Total: -1.00 -64.09 281.96 3.82 -60.27 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.34 Total: 14.47 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.87 Total: -26.22 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -3.22 Total: -98.31 kcal Atomic # 8 Polarization: 2.70 SS G_CDS: 0.80 Total: 3.50 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -64.09 3.82 -60.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708424634.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.628 kcal (2) G-P(sol) polarization free energy of solvation -64.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds