Wall clock time and date at job start Mon Mar 30 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47250 * 2 1 4 4 H 1.09001 * 109.47228 * 179.82353 * 3 2 1 5 5 C 1.50697 * 109.47242 * 299.82997 * 3 2 1 6 6 H 1.08000 * 120.00174 * 119.99795 * 5 3 2 7 7 C 1.37878 * 119.99800 * 299.99577 * 5 3 2 8 8 N 1.31510 * 120.00432 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99830 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47242 * 90.00094 * 9 7 5 11 11 H 1.48503 * 109.46975 * 209.99960 * 9 7 5 12 12 H 1.48498 * 109.47146 * 329.99924 * 9 7 5 13 13 N 1.46909 * 109.46918 * 59.82781 * 3 2 1 14 14 C 1.46899 * 110.99562 * 85.92768 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.54549 * 14 13 3 16 16 N 1.30178 * 126.80097 * 90.02988 * 15 14 13 17 17 O 1.20922 * 111.60399 * 179.97438 * 16 15 14 18 18 C 1.34043 * 111.56647 * 0.02562 * 17 16 15 19 19 C 1.35446 * 106.44799 * 359.74657 * 18 17 16 20 20 C 1.50698 * 128.01064 * 180.23913 * 19 18 17 21 21 H 1.09001 * 109.46747 * 175.58715 * 1 2 3 22 22 H 1.08994 * 109.47027 * 55.59197 * 1 2 3 23 23 H 1.08996 * 109.46826 * 295.58351 * 1 2 3 24 24 H 1.08998 * 109.47101 * 120.00717 * 2 1 3 25 25 H 1.09004 * 109.46923 * 239.99875 * 2 1 3 26 26 H 0.96993 * 120.00766 * 179.97438 * 8 7 5 27 27 H 1.00896 * 110.99633 * 209.88491 * 13 3 2 28 28 H 1.08995 * 109.47219 * 295.54380 * 14 13 3 29 29 H 1.08999 * 109.47280 * 55.55056 * 14 13 3 30 30 H 1.08006 * 126.77110 * 180.02562 * 18 17 16 31 31 H 1.09000 * 109.46762 * 270.16763 * 20 19 18 32 32 H 1.09004 * 109.46937 * 30.16265 * 20 19 18 33 33 H 1.08997 * 109.47383 * 150.15912 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1301 1.4424 0.0032 5 6 1.5412 2.1517 -1.2325 6 1 0.9200 3.0299 -1.1361 7 6 1.8779 1.6794 -2.4834 8 7 2.6339 0.6098 -2.6009 9 14 1.2601 2.5589 -4.0112 10 1 2.2398 3.5998 -4.4133 11 1 1.0981 1.5789 -5.1151 12 1 -0.0487 3.1972 -3.7198 13 7 1.5470 2.1362 1.1974 14 6 2.4393 1.9093 2.3421 15 6 1.9632 2.7217 3.5187 16 7 1.1196 2.3453 4.4360 17 8 0.9329 3.2164 5.2536 18 6 1.6491 4.3148 4.9755 19 6 2.3483 4.0415 3.8482 20 6 3.3116 4.9378 3.1134 21 1 -0.3633 -1.0246 -0.0791 22 1 -0.3633 0.5807 -0.8478 23 1 -0.3633 0.4438 0.9269 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 2.8705 0.2773 -3.4809 27 1 1.4287 3.1225 1.0209 28 1 2.4322 0.8514 2.6042 29 1 3.4528 2.2115 2.0782 30 1 1.6685 5.2345 5.5416 31 1 2.7694 5.5217 2.3697 32 1 3.7945 5.6106 3.8221 33 1 4.0677 4.3293 2.6172 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708424637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:42 Heat of formation + Delta-G solvation = 49.916304 kcal Electronic energy + Delta-G solvation = -15462.496905 eV Core-core repulsion = 12912.289278 eV Total energy + Delta-G solvation = -2550.207627 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.68752 -36.66955 -34.75950 -32.70251 -31.71392 -30.42340 -28.03667 -26.97849 -24.69357 -23.09799 -21.38838 -20.90941 -19.04993 -17.37183 -17.27263 -16.29497 -15.08843 -14.68183 -13.85979 -13.74759 -13.56824 -13.18686 -13.09644 -12.61044 -12.20865 -12.13469 -11.77438 -11.44850 -10.95814 -10.90038 -10.71953 -10.41360 -10.14075 -9.80122 -9.60342 -9.35360 -9.20319 -8.79651 -8.49114 -7.30395 -6.04255 -4.10048 1.69972 2.46100 3.27397 3.34904 3.38510 3.46764 4.37459 4.47102 4.74183 5.01628 5.26578 5.30005 5.48741 5.62935 5.69366 5.84526 5.92102 6.09444 6.18494 6.38764 6.56059 6.70501 6.86929 7.24861 7.28226 7.47844 7.73998 7.76424 7.81931 8.23376 8.34211 8.55227 8.61385 8.98160 9.54750 11.01689 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035888 B = 0.006975 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.007217 B = 4013.555512 C = 4405.662667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.003 0.997 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.135 3.865 15 C 0.033 3.967 16 N -0.352 5.352 17 O 0.095 5.905 18 C -0.079 4.079 19 C -0.197 4.197 20 C -0.078 4.078 21 H 0.014 0.986 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.010 0.990 25 H 0.088 0.912 26 H 0.261 0.739 27 H 0.332 0.668 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.211 0.789 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 7.272 10.982 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.020 0.980 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.308 5.308 14 C 0.005 3.995 15 C -0.127 4.127 16 N -0.056 5.056 17 O 0.028 5.972 18 C -0.160 4.160 19 C -0.201 4.201 20 C -0.135 4.135 21 H 0.033 0.967 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.029 0.971 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.227 0.773 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.137 5.496 11.233 12.506 hybrid contribution 0.944 1.639 -1.370 2.335 sum 1.081 7.135 9.863 12.221 Atomic orbital electron populations 1.21448 0.97458 0.97482 1.01353 1.21444 0.95145 0.98111 0.99507 1.19181 0.93019 0.91561 0.85251 0.97979 1.21158 1.31772 1.12027 0.90240 0.92280 1.24876 0.95012 0.94973 0.98907 1.69875 1.36608 1.22611 1.23578 0.86568 0.79252 0.79342 0.82689 1.20787 1.21185 1.19852 1.60756 1.48315 1.16068 1.05712 1.20247 0.94253 0.97977 0.87051 1.23703 0.96561 0.94142 0.98259 1.73856 1.17367 1.12335 1.02065 1.84821 1.52668 1.18247 1.41422 1.25650 0.96733 0.94145 0.99483 1.21387 1.03960 0.96273 0.98446 1.20097 0.96694 0.97453 0.99230 0.96715 0.92504 0.93965 0.97144 0.89395 0.92889 0.85113 0.90229 0.93912 0.77289 0.90649 0.91400 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 9.52 37.16 0.35 -2.45 16 2 C -0.10 -2.56 5.59 -26.73 -0.15 -2.71 16 3 C 0.22 5.38 2.30 -68.86 -0.16 5.22 16 4 H 0.00 0.07 7.71 -51.93 -0.40 -0.33 16 5 C -0.51 -13.67 7.26 -34.44 -0.25 -13.92 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.91 11.32 55.43 0.63 -24.29 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.68 -14.57 5.64 -109.22 -0.62 -15.18 16 14 C 0.13 2.55 6.04 -4.97 -0.03 2.52 16 15 C 0.03 0.57 6.79 -82.09 -0.56 0.01 16 16 N -0.35 -6.28 12.07 33.43 0.40 -5.87 16 17 O 0.09 1.40 11.20 17.17 0.19 1.59 16 18 C -0.08 -0.91 12.26 29.74 0.36 -0.55 16 19 C -0.20 -2.69 6.32 -104.42 -0.66 -3.35 16 20 C -0.08 -0.86 10.37 36.00 0.37 -0.49 16 21 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.06 1.41 7.07 -51.93 -0.37 1.04 16 23 H 0.04 0.97 7.74 -51.93 -0.40 0.56 16 24 H 0.01 0.23 7.60 -51.93 -0.39 -0.16 16 25 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.33 7.01 8.13 -39.29 -0.32 6.69 16 28 H 0.08 1.57 7.61 -51.93 -0.40 1.18 16 29 H 0.04 0.77 7.45 -51.93 -0.39 0.39 16 30 H 0.21 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.86 7.65 -51.93 -0.40 0.46 16 LS Contribution 278.30 15.07 4.19 4.19 Total: -1.00 -29.36 278.30 -5.63 -35.00 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.60 Total: 2.67 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.81 Total: -14.07 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.42 Total: -45.34 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.19 Total: 1.59 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.36 -5.63 -35.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708424637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.912 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds