Wall clock time and date at job start Mon Mar 30 2020 02:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47250 * 2 1 4 4 H 1.09001 * 109.47228 * 179.82353 * 3 2 1 5 5 C 1.50697 * 109.47242 * 299.82997 * 3 2 1 6 6 H 1.08000 * 120.00174 * 119.99795 * 5 3 2 7 7 C 1.37878 * 119.99800 * 299.99577 * 5 3 2 8 8 N 1.31510 * 120.00432 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99830 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47242 * 90.00094 * 9 7 5 11 11 H 1.48503 * 109.46975 * 209.99960 * 9 7 5 12 12 H 1.48498 * 109.47146 * 329.99924 * 9 7 5 13 13 N 1.46909 * 109.46918 * 59.82781 * 3 2 1 14 14 C 1.46899 * 110.99562 * 85.92768 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.54549 * 14 13 3 16 16 N 1.30178 * 126.80097 * 90.02988 * 15 14 13 17 17 O 1.20922 * 111.60399 * 179.97438 * 16 15 14 18 18 C 1.34043 * 111.56647 * 0.02562 * 17 16 15 19 19 C 1.35446 * 106.44799 * 359.74657 * 18 17 16 20 20 C 1.50698 * 128.01064 * 180.23913 * 19 18 17 21 21 H 1.09001 * 109.46747 * 175.58715 * 1 2 3 22 22 H 1.08994 * 109.47027 * 55.59197 * 1 2 3 23 23 H 1.08996 * 109.46826 * 295.58351 * 1 2 3 24 24 H 1.08998 * 109.47101 * 120.00717 * 2 1 3 25 25 H 1.09004 * 109.46923 * 239.99875 * 2 1 3 26 26 H 0.96993 * 120.00766 * 179.97438 * 8 7 5 27 27 H 1.00896 * 110.99633 * 209.88491 * 13 3 2 28 28 H 1.08995 * 109.47219 * 295.54380 * 14 13 3 29 29 H 1.08999 * 109.47280 * 55.55056 * 14 13 3 30 30 H 1.08006 * 126.77110 * 180.02562 * 18 17 16 31 31 H 1.09000 * 109.46762 * 270.16763 * 20 19 18 32 32 H 1.09004 * 109.46937 * 30.16265 * 20 19 18 33 33 H 1.08997 * 109.47383 * 150.15912 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1301 1.4424 0.0032 5 6 1.5412 2.1517 -1.2325 6 1 0.9200 3.0299 -1.1361 7 6 1.8779 1.6794 -2.4834 8 7 2.6339 0.6098 -2.6009 9 14 1.2601 2.5589 -4.0112 10 1 2.2398 3.5998 -4.4133 11 1 1.0981 1.5789 -5.1151 12 1 -0.0487 3.1972 -3.7198 13 7 1.5470 2.1362 1.1974 14 6 2.4393 1.9093 2.3421 15 6 1.9632 2.7217 3.5187 16 7 1.1196 2.3453 4.4360 17 8 0.9329 3.2164 5.2536 18 6 1.6491 4.3148 4.9755 19 6 2.3483 4.0415 3.8482 20 6 3.3116 4.9378 3.1134 21 1 -0.3633 -1.0246 -0.0791 22 1 -0.3633 0.5807 -0.8478 23 1 -0.3633 0.4438 0.9269 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 2.8705 0.2773 -3.4809 27 1 1.4287 3.1225 1.0209 28 1 2.4322 0.8514 2.6042 29 1 3.4528 2.2115 2.0782 30 1 1.6685 5.2345 5.5416 31 1 2.7694 5.5217 2.3697 32 1 3.7945 5.6106 3.8221 33 1 4.0677 4.3293 2.6172 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708424637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:41 Heat of formation + Delta-G solvation = 30.851617 kcal Electronic energy + Delta-G solvation = -15463.323612 eV Core-core repulsion = 12912.289278 eV Total energy + Delta-G solvation = -2551.034334 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.87738 -38.41716 -36.15224 -34.30806 -33.21490 -32.20806 -29.13883 -28.69017 -26.45586 -25.03790 -22.51963 -22.15137 -20.99168 -18.76126 -18.50986 -18.00223 -16.95053 -16.24227 -15.55157 -15.30965 -15.15381 -14.55012 -14.08810 -14.00777 -13.96138 -13.62445 -13.23534 -13.00435 -12.81128 -12.66371 -12.45268 -12.11749 -11.84378 -11.69539 -11.39451 -10.97526 -10.76439 -10.54642 -10.21693 -9.10419 -8.11062 -6.23666 0.67915 1.25309 1.41766 1.44119 1.53640 2.42168 2.53146 3.17900 3.22704 3.55847 3.86741 4.06065 4.23428 4.47400 4.56707 4.69482 4.74296 4.78722 4.85547 4.89964 4.93393 5.01515 5.24855 5.34124 5.38287 5.50450 5.69004 5.75834 5.82382 6.23706 6.41750 6.70694 6.96669 7.44733 7.45030 8.94391 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035888 B = 0.006975 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.007217 B = 4013.555512 C = 4405.662667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.101 4.101 3 C 0.224 3.776 4 H -0.027 1.027 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.956 3.044 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.674 5.674 14 C 0.141 3.859 15 C 0.006 3.994 16 N -0.387 5.387 17 O 0.097 5.903 18 C -0.050 4.050 19 C -0.211 4.211 20 C -0.075 4.075 21 H 0.033 0.967 22 H 0.039 0.961 23 H 0.043 0.957 24 H 0.016 0.984 25 H 0.063 0.937 26 H 0.262 0.738 27 H 0.334 0.666 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.266 0.734 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 9.191 11.876 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.140 4.140 3 C 0.116 3.884 4 H -0.009 1.009 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.306 5.306 14 C 0.012 3.988 15 C -0.153 4.153 16 N -0.091 5.091 17 O 0.030 5.970 18 C -0.131 4.131 19 C -0.215 4.215 20 C -0.132 4.132 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.151 0.849 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.282 0.718 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.312 7.412 12.131 14.220 hybrid contribution 1.102 1.075 -1.540 2.178 sum 0.790 8.487 10.592 13.596 Atomic orbital electron populations 1.21299 0.96188 0.98388 1.00566 1.21351 0.96166 0.97919 0.98534 1.18958 0.91174 0.91941 0.86306 1.00938 1.21391 1.31673 1.12086 0.91153 0.92433 1.25615 0.95135 0.95599 1.01694 1.70004 1.37534 1.23795 1.24175 0.85589 0.78855 0.78300 0.79104 1.20014 1.21089 1.19427 1.60635 1.48902 1.15932 1.05173 1.20055 0.94132 0.97627 0.87028 1.23584 0.97808 0.95844 0.98023 1.73845 1.18334 1.13988 1.02939 1.84768 1.52754 1.18881 1.40594 1.26595 0.93871 0.94211 0.98423 1.21686 1.05136 0.95118 0.99570 1.20157 0.95936 0.97274 0.99823 0.94809 0.94183 0.93785 0.96536 0.91851 0.92881 0.84878 0.91801 0.93489 0.71824 0.90621 0.87995 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.99 9.52 71.98 0.69 -4.30 16 2 C -0.10 -5.09 5.59 30.59 0.17 -4.92 16 3 C 0.22 11.38 2.30 44.17 0.10 11.48 16 4 H -0.03 -1.50 7.71 -2.39 -0.02 -1.51 16 5 C -0.52 -28.19 7.26 25.60 0.19 -28.01 16 6 H 0.06 3.05 7.60 -2.91 -0.02 3.03 16 7 C 0.02 1.03 5.30 84.66 0.45 1.48 16 8 N -0.92 -52.13 11.32 21.45 0.24 -51.89 16 9 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 N -0.67 -29.47 5.64 -499.45 -2.82 -32.28 16 14 C 0.14 5.45 6.04 85.56 0.52 5.97 16 15 C 0.01 0.19 6.79 43.58 0.30 0.49 16 16 N -0.39 -13.53 12.07 -49.55 -0.60 -14.13 16 17 O 0.10 2.67 11.20 71.60 0.80 3.47 16 18 C -0.05 -0.98 12.26 67.17 0.82 -0.15 16 19 C -0.21 -5.31 6.32 -19.74 -0.12 -5.43 16 20 C -0.07 -1.49 10.37 71.24 0.74 -0.75 16 21 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.04 1.97 7.07 -2.39 -0.02 1.95 16 23 H 0.04 2.00 7.74 -2.39 -0.02 1.98 16 24 H 0.02 0.77 7.60 -2.39 -0.02 0.75 16 25 H 0.06 3.52 6.07 -2.39 -0.01 3.50 16 26 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.33 14.21 8.13 -89.70 -0.73 13.48 16 28 H 0.06 2.62 7.61 -2.39 -0.02 2.60 16 29 H 0.05 1.75 7.45 -2.39 -0.02 1.74 16 30 H 0.27 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 Total: -1.00 -63.98 278.30 3.88 -60.11 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.38 Total: 13.87 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 3.84 Total: -24.14 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -3.17 Total: -98.30 kcal Atomic # 8 Polarization: 2.67 SS G_CDS: 0.80 Total: 3.47 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -63.98 3.88 -60.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708424637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.959 kcal (2) G-P(sol) polarization free energy of solvation -63.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds