Wall clock time and date at job start Mon Mar 30 2020 02:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35445 * 128.01296 * 2 1 4 4 O 1.34041 * 106.44869 * 180.23429 * 3 2 1 5 5 N 1.20922 * 111.56496 * 359.75222 * 4 3 2 6 6 C 1.30173 * 111.60611 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.80273 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47107 * 90.02735 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 H 1.08994 * 109.46818 * 35.00369 * 9 8 7 11 11 C 1.52993 * 109.47308 * 275.00154 * 9 8 7 12 12 C 1.52998 * 109.46904 * 155.00222 * 9 8 7 13 13 C 1.50699 * 109.47013 * 295.00215 * 12 9 8 14 14 H 1.08000 * 120.00527 * 359.97438 * 13 12 9 15 15 C 1.37882 * 120.00255 * 180.02562 * 13 12 9 16 16 N 1.31517 * 119.99406 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00315 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47228 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47107 * 120.00153 * 17 15 13 20 20 H 1.48506 * 109.47108 * 240.00068 * 17 15 13 21 21 H 1.08997 * 109.47104 * 270.17293 * 1 2 3 22 22 H 1.09001 * 109.46913 * 30.16580 * 1 2 3 23 23 H 1.08995 * 109.47487 * 150.16632 * 1 2 3 24 24 H 1.07998 * 126.77415 * 359.95765 * 3 2 1 25 25 H 1.09002 * 109.47152 * 330.02822 * 7 6 5 26 26 H 1.09001 * 109.46980 * 210.02923 * 7 6 5 27 27 H 1.00908 * 110.99847 * 56.05051 * 8 7 6 28 28 H 1.08999 * 109.47404 * 180.02562 * 11 9 8 29 29 H 1.09004 * 109.47538 * 300.00000 * 11 9 8 30 30 H 1.09001 * 109.46997 * 59.99957 * 11 9 8 31 31 H 1.08996 * 109.47522 * 55.00125 * 12 9 8 32 32 H 1.08999 * 109.46971 * 175.00433 * 12 9 8 33 33 H 0.96997 * 119.99817 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3412 1.0671 0.0000 4 8 3.5878 0.5745 -0.0053 5 7 3.5878 -0.6347 -0.0034 6 6 2.3776 -1.1141 0.0036 7 6 1.9826 -2.5684 0.0074 8 7 1.8611 -3.0393 1.3935 9 6 1.4758 -4.4562 1.4364 10 1 1.9391 -4.9840 0.6029 11 6 -0.0460 -4.5743 1.3322 12 6 1.9460 -5.0729 2.7552 13 6 3.4523 -5.0676 2.8033 14 1 4.0176 -4.6651 1.9759 15 6 4.1087 -5.5777 3.9034 16 7 3.4203 -6.0683 4.9108 17 14 5.9757 -5.5718 3.9627 18 1 6.5088 -4.9702 2.7141 19 1 6.4313 -4.7753 5.1303 20 1 6.4713 -6.9658 4.0907 21 1 -0.3633 0.0031 1.0276 22 1 -0.3633 0.8885 -0.5164 23 1 -0.3634 -0.8914 -0.5112 24 1 2.0578 2.1093 -0.0006 25 1 2.7436 -3.1530 -0.5095 26 1 1.0259 -2.6864 -0.5016 27 1 1.2079 -2.4715 1.9124 28 1 -0.3320 -5.6257 1.3644 29 1 -0.5094 -4.0465 2.1657 30 1 -0.3811 -4.1350 0.3926 31 1 1.5539 -4.4906 3.5889 32 1 1.5839 -6.0985 2.8263 33 1 3.8821 -6.4275 5.6846 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708466334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:07 Heat of formation + Delta-G solvation = 48.793683 kcal Electronic energy + Delta-G solvation = -15252.313520 eV Core-core repulsion = 12702.057213 eV Total energy + Delta-G solvation = -2550.256308 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.77237 -37.08315 -34.83820 -32.76440 -32.09294 -30.14333 -28.11953 -27.24006 -25.42305 -22.90342 -21.49431 -21.01679 -19.73900 -17.40284 -17.29294 -16.17513 -15.21339 -14.69693 -14.45820 -13.92152 -13.73263 -13.37885 -13.13564 -12.61457 -12.49061 -12.11621 -11.89280 -11.73197 -11.45074 -11.05401 -10.81832 -10.59325 -10.40644 -10.05493 -9.78127 -9.29397 -9.27438 -8.92718 -8.21248 -7.62324 -5.83684 -3.80745 1.63169 2.35020 3.39457 3.42880 3.50005 3.57638 4.32243 4.58271 4.62346 4.88466 5.01263 5.13788 5.43682 5.52368 5.54272 5.63888 5.70952 5.74783 5.85886 5.88184 5.94677 6.02455 6.23859 6.41193 6.60479 7.00374 7.52130 7.68699 7.99268 8.06024 8.18387 8.49411 8.64008 9.25011 9.80815 11.28524 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026728 B = 0.007403 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.322640 B = 3781.212329 C = 4573.510361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.200 4.200 3 C -0.075 4.075 4 O 0.100 5.900 5 N -0.344 5.344 6 C 0.029 3.971 7 C 0.136 3.864 8 N -0.655 5.655 9 C 0.089 3.911 10 H 0.066 0.934 11 C -0.180 4.180 12 C 0.033 3.967 13 C -0.487 4.487 14 H 0.059 0.941 15 C 0.049 3.951 16 N -0.905 5.905 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.288 1.288 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.211 0.789 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.332 0.668 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.017 0.983 32 H 0.019 0.981 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 12.608 -10.692 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.205 4.205 3 C -0.157 4.157 4 O 0.032 5.968 5 N -0.046 5.046 6 C -0.131 4.131 7 C 0.006 3.994 8 N -0.287 5.287 9 C -0.020 4.020 10 H 0.085 0.915 11 C -0.239 4.239 12 C -0.004 4.004 13 C -0.525 4.525 14 H 0.077 0.923 15 C -0.150 4.150 16 N -0.547 5.547 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.214 1.214 21 H 0.092 0.908 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.228 0.772 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.150 0.850 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.933 11.828 -10.480 16.880 hybrid contribution -0.752 0.318 -0.017 0.816 sum -6.684 12.145 -10.497 17.389 Atomic orbital electron populations 1.20076 0.87698 1.02801 1.02721 1.21339 0.98503 0.91943 1.08666 1.25676 0.83671 1.00871 1.05462 1.84854 1.28908 1.15931 1.67098 1.73909 1.22451 0.90653 1.17585 1.23514 0.88231 0.98460 1.02892 1.20211 0.99594 0.86692 0.92931 1.60535 1.55089 1.03852 1.09186 1.21837 0.90759 0.87088 1.02268 0.91530 1.22563 0.99365 1.02061 0.99929 1.19119 0.96542 0.94816 0.89956 1.21201 0.91559 1.37079 1.02695 0.92311 1.24998 0.97953 0.96066 0.95965 1.69976 1.34892 1.42427 1.07362 0.86580 0.86542 0.77222 0.77944 1.19770 1.21303 1.21399 0.90781 0.91272 0.91189 0.77226 0.89650 0.94014 0.85003 0.92259 0.92950 0.94382 0.96490 0.96265 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.37 36.01 0.37 -0.31 16 2 C -0.20 -2.48 6.32 -104.42 -0.66 -3.14 16 3 C -0.08 -0.83 12.26 29.74 0.36 -0.46 16 4 O 0.10 1.47 11.20 17.17 0.19 1.66 16 5 N -0.34 -6.11 12.07 33.42 0.40 -5.71 16 6 C 0.03 0.47 6.84 -82.10 -0.56 -0.10 16 7 C 0.14 2.23 5.99 -4.98 -0.03 2.20 16 8 N -0.66 -12.67 5.95 -107.99 -0.64 -13.31 16 9 C 0.09 1.81 2.53 -67.72 -0.17 1.64 16 10 H 0.07 1.37 7.80 -51.93 -0.41 0.97 16 11 C -0.18 -2.93 9.16 37.15 0.34 -2.59 16 12 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 13 C -0.49 -14.21 8.84 -34.44 -0.30 -14.51 16 14 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 15 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 16 N -0.91 -28.09 13.29 55.43 0.74 -27.35 16 17 Si 0.89 23.05 29.54 -169.99 -5.02 18.03 16 18 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.62 7.65 -51.93 -0.40 0.23 16 24 H 0.21 1.26 8.06 -52.49 -0.42 0.83 16 25 H 0.09 1.50 8.06 -51.93 -0.42 1.09 16 26 H 0.04 0.58 6.94 -51.93 -0.36 0.22 16 27 H 0.33 5.99 8.46 -39.29 -0.33 5.66 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 30 H 0.04 0.52 7.45 -51.93 -0.39 0.14 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 285.11 15.07 4.30 4.30 Total: -1.00 -33.42 285.11 -5.71 -39.13 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -4.80 Total: -1.58 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.88 Total: -15.17 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.50 Total: -46.37 kcal Atomic # 8 Polarization: 1.47 SS G_CDS: 0.19 Total: 1.66 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.42 -5.71 -39.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708466334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.925 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds