Wall clock time and date at job start Mon Mar 30 2020 02:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34129 * 125.99059 * 2 1 4 4 C 1.30503 * 109.25413 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.64576 * 179.97438 * 4 3 2 6 6 O 1.42894 * 109.47262 * 270.00377 * 5 4 3 7 7 N 1.35043 * 108.70077 * 0.02562 * 4 3 2 8 8 C 1.46503 * 126.39568 * 180.25669 * 7 4 3 9 9 C 1.52997 * 109.47382 * 269.69212 * 8 7 4 10 10 C 1.50696 * 109.47370 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99878 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99974 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00305 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99632 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46983 * 90.00147 * 14 12 10 16 16 H 1.48497 * 109.47047 * 209.99539 * 14 12 10 17 17 H 1.48496 * 109.47262 * 329.99779 * 14 12 10 18 18 C 1.34668 * 125.98675 * 179.97438 * 2 1 3 19 19 C 1.50706 * 126.59473 * 0.04416 * 18 2 1 20 20 H 1.08999 * 109.47554 * 270.00529 * 1 2 3 21 21 H 1.09003 * 109.46831 * 30.00662 * 1 2 3 22 22 H 1.09006 * 109.47069 * 149.99887 * 1 2 3 23 23 H 1.09001 * 109.47157 * 30.00953 * 5 4 3 24 24 H 1.09001 * 109.46740 * 150.00187 * 5 4 3 25 25 H 0.96700 * 113.99992 * 180.02562 * 6 5 4 26 26 H 1.08995 * 109.46612 * 29.68964 * 8 7 4 27 27 H 1.09001 * 109.46803 * 149.68860 * 8 7 4 28 28 H 1.09006 * 109.47108 * 300.00218 * 9 8 7 29 29 H 1.09004 * 109.47133 * 59.99336 * 9 8 7 30 30 H 0.96997 * 120.00230 * 180.02562 * 13 12 10 31 31 H 1.09003 * 109.46483 * 269.95682 * 19 18 2 32 32 H 1.08998 * 109.46454 * 29.95494 * 19 18 2 33 33 H 1.08995 * 109.47139 * 149.95503 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7094 0.0006 5 6 4.7386 1.6293 0.0002 6 8 5.1162 1.9192 -1.3471 7 7 3.5912 -0.6402 0.0004 8 6 4.7996 -1.4685 0.0061 9 6 5.2230 -1.7629 -1.4343 10 6 6.4656 -2.6155 -1.4284 11 1 6.9092 -2.9169 -0.4910 12 6 7.0367 -3.0098 -2.6198 13 7 6.4969 -2.6424 -3.7613 14 14 8.5775 -4.0661 -2.6123 15 1 8.1940 -5.5008 -2.6077 16 1 9.3841 -3.7733 -3.8242 17 1 9.3789 -3.7640 -1.3993 18 6 2.2983 -1.0897 0.0005 19 6 1.8471 -2.5276 0.0002 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8900 -0.5140 22 1 -0.3633 -0.8900 -0.5139 23 1 4.4831 2.5563 0.5135 24 1 5.5695 1.1464 0.5145 25 1 5.8800 2.5072 -1.4237 26 1 5.6014 -0.9378 0.5192 27 1 4.5950 -2.4059 0.5235 28 1 4.4211 -2.2936 -1.9476 29 1 5.4275 -0.8255 -1.9517 30 1 6.8985 -2.9201 -4.5994 31 1 1.7385 -2.8744 1.0279 32 1 0.8891 -2.6076 -0.5135 33 1 2.5874 -3.1406 -0.5138 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709059071.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:08 Heat of formation + Delta-G solvation = -35.127201 kcal Electronic energy + Delta-G solvation = -15515.246677 eV Core-core repulsion = 12961.351286 eV Total energy + Delta-G solvation = -2553.895390 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.15598 -37.77021 -36.56012 -34.69392 -33.69313 -31.66459 -29.43706 -29.08747 -26.90245 -24.65156 -23.40976 -21.07942 -20.42696 -18.78180 -18.49693 -17.17246 -16.73291 -16.23078 -15.77425 -15.66864 -14.87981 -14.47487 -14.24814 -13.99578 -13.81110 -13.69013 -13.52058 -12.94891 -12.93362 -12.88218 -12.74795 -12.55187 -12.12641 -11.92271 -11.44002 -11.09594 -10.92649 -10.62818 -10.30938 -9.04439 -8.25280 -6.40110 0.98613 1.40866 1.42137 1.53361 1.90760 2.00498 2.39208 3.08990 3.28636 3.74180 3.86527 3.95831 4.13824 4.24477 4.33346 4.37751 4.47236 4.58955 4.63199 4.72036 4.91798 5.01899 5.10427 5.17390 5.32528 5.36872 5.62599 5.70156 5.93375 6.01782 6.29270 6.76047 6.87575 7.12119 7.30946 8.86814 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030985 B = 0.007659 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.446087 B = 3654.761591 C = 4190.641638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.034 4.034 3 N -0.506 5.506 4 C 0.172 3.828 5 C 0.168 3.832 6 O -0.588 6.588 7 N -0.439 5.439 8 C 0.117 3.883 9 C 0.030 3.970 10 C -0.543 4.543 11 H 0.074 0.926 12 C 0.003 3.997 13 N -0.932 5.932 14 Si 0.972 3.028 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.257 1.257 18 C -0.034 4.034 19 C -0.073 4.073 20 H 0.081 0.919 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.403 0.597 26 H 0.096 0.904 27 H 0.096 0.904 28 H -0.015 1.015 29 H -0.006 1.006 30 H 0.264 0.736 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.234 3.088 9.847 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.164 4.164 3 N -0.228 5.228 4 C -0.089 4.089 5 C 0.089 3.911 6 O -0.397 6.397 7 N -0.121 5.121 8 C -0.004 4.004 9 C -0.008 4.008 10 C -0.581 4.581 11 H 0.092 0.908 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.796 3.204 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.180 1.180 18 C -0.150 4.150 19 C -0.130 4.130 20 H 0.100 0.900 21 H 0.082 0.918 22 H 0.103 0.897 23 H 0.114 0.886 24 H 0.094 0.906 25 H 0.254 0.746 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.004 0.996 29 H 0.012 0.988 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.813 3.431 9.543 11.689 hybrid contribution 1.572 -0.798 -0.525 1.840 sum -4.241 2.633 9.018 10.307 Atomic orbital electron populations 1.20053 0.85177 1.03033 1.02991 1.21146 0.98032 0.87645 1.09576 1.69993 1.00371 1.31614 1.20829 1.23211 0.95250 0.82390 1.08087 1.20237 0.90272 0.96151 0.84457 1.86584 1.54340 1.72321 1.26432 1.45658 1.07524 1.07186 1.51726 1.22083 0.83655 0.94601 1.00073 1.19141 0.95460 0.95567 0.90626 1.21440 1.10830 1.32432 0.93391 0.90753 1.26021 1.01095 0.97461 0.94983 1.70146 1.42154 1.46573 0.98228 0.85344 0.78399 0.78604 0.78066 1.19711 1.21149 1.18040 1.21707 0.83365 0.99052 1.10877 1.20317 1.02133 0.86819 1.03748 0.90034 0.91838 0.89716 0.88583 0.90589 0.74596 0.88577 0.88605 0.99645 0.98799 0.92705 0.88868 0.88238 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.44 10.22 71.23 0.73 -0.71 16 2 C -0.03 -1.25 7.09 41.39 0.29 -0.96 16 3 N -0.51 -20.80 11.25 -176.29 -1.98 -22.78 16 4 C 0.17 6.91 7.53 138.13 1.04 7.95 16 5 C 0.17 5.42 7.35 71.24 0.52 5.94 16 6 O -0.59 -21.10 13.64 -148.98 -2.03 -23.13 16 7 N -0.44 -17.71 2.75 -499.86 -1.38 -19.08 16 8 C 0.12 4.74 5.57 86.38 0.48 5.22 16 9 C 0.03 1.57 5.30 29.85 0.16 1.73 16 10 C -0.54 -29.36 9.11 25.60 0.23 -29.13 16 11 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 12 C 0.00 0.17 5.46 84.65 0.46 0.63 16 13 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 14 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 18 C -0.03 -1.25 6.95 40.95 0.28 -0.96 16 19 C -0.07 -2.08 9.77 71.24 0.70 -1.38 16 20 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.08 1.84 7.17 -2.38 -0.02 1.82 16 23 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.08 2.15 7.06 -2.39 -0.02 2.13 16 25 H 0.40 9.44 9.12 -74.06 -0.68 8.76 16 26 H 0.10 3.53 7.04 -2.39 -0.02 3.51 16 27 H 0.10 3.53 7.82 -2.39 -0.02 3.51 16 28 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 29 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.10 2.36 7.17 -2.39 -0.02 2.34 16 33 H 0.05 1.73 7.88 -2.39 -0.02 1.71 16 Total: -1.00 -74.39 284.31 2.25 -72.14 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.43 Total: 16.24 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.90 Total: -11.67 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -3.07 Total: -98.15 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -2.03 Total: -23.13 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -74.39 2.25 -72.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709059071.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.016 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds