Wall clock time and date at job start Mon Mar 30 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47475 * 2 1 4 4 C 1.50702 * 109.47042 * 239.99164 * 2 1 3 5 5 H 1.07998 * 120.00308 * 239.99768 * 4 2 1 6 6 C 1.37877 * 119.99561 * 60.00729 * 4 2 1 7 7 N 1.31513 * 120.00292 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99862 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47183 * 89.99687 * 8 6 4 10 10 H 1.48498 * 109.47289 * 209.99952 * 8 6 4 11 11 H 1.48501 * 109.47115 * 329.99926 * 8 6 4 12 12 N 1.46505 * 109.46813 * 119.99752 * 2 1 3 13 13 C 1.34771 * 119.99786 * 275.00023 * 12 2 1 14 14 O 1.21280 * 120.00297 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00088 * 179.97438 * 13 12 2 16 16 H 1.09007 * 113.44606 * 74.46309 * 15 13 12 17 17 C 1.55140 * 114.44182 * 300.63468 * 15 13 12 18 18 H 1.09002 * 120.99419 * 84.79907 * 17 15 13 19 19 C 1.55984 * 81.48811 * 204.98759 * 17 15 13 20 20 C 1.54882 * 114.44518 * 208.34827 * 15 13 12 21 21 H 1.09000 * 119.96130 * 274.06434 * 20 15 13 22 22 N 1.50236 * 103.48309 * 48.13879 * 20 15 13 23 23 C 1.49603 * 100.98540 * 44.02660 * 22 20 15 24 24 H 1.08995 * 109.46638 * 300.00712 * 1 2 3 25 25 H 1.08995 * 109.47028 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46540 * 60.00384 * 1 2 3 27 27 H 0.96999 * 119.99879 * 180.02562 * 7 6 4 28 28 H 0.96997 * 120.00115 * 94.99454 * 12 2 1 29 29 H 1.09001 * 114.52095 * 154.67142 * 19 17 15 30 30 H 1.08998 * 114.52588 * 288.30789 * 19 17 15 31 31 H 1.00897 * 111.00578 * 286.28342 * 22 20 15 32 32 H 1.09000 * 111.44859 * 242.34981 * 23 22 20 33 33 H 1.09006 * 111.44766 * 117.35298 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9430 0.8295 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 1.3448 -2.1619 -4.4122 10 1 2.4875 -0.1407 -5.1120 11 1 3.6309 -1.7570 -3.7118 12 7 2.0184 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1587 2.4114 15 6 2.6487 -0.7286 3.5879 16 1 3.7202 -0.9280 3.5671 17 6 1.7798 -1.9348 4.0319 18 1 1.9240 -2.9221 3.5931 19 6 2.4185 -1.5897 5.4125 20 6 2.1314 -0.1396 4.9236 21 1 2.6571 0.6930 5.3912 22 7 0.6527 -0.0021 4.6965 23 6 0.3424 -1.3098 4.0395 24 1 -0.3632 0.5139 0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 -0.8900 27 1 0.7084 1.1606 -3.4845 28 1 2.2489 -1.6317 1.1528 29 1 1.8287 -1.9017 6.2744 30 1 3.4764 -1.8385 5.4965 31 1 0.4520 0.7697 4.0784 32 1 -0.0356 -1.1674 3.0271 33 1 -0.3471 -1.9036 4.6396 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712086477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:11 Heat of formation + Delta-G solvation = 19.760120 kcal Electronic energy + Delta-G solvation = -15910.642181 eV Core-core repulsion = 13359.126884 eV Total energy + Delta-G solvation = -2551.515298 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.46151 -37.94016 -34.79283 -32.41732 -31.08574 -29.14348 -27.35342 -25.97598 -25.26212 -21.38725 -20.77967 -19.88380 -19.06769 -17.16154 -16.60641 -15.74830 -15.50790 -15.11381 -14.41858 -13.45962 -13.12778 -12.78237 -12.48841 -12.23642 -12.11501 -11.76351 -11.65104 -11.20039 -11.09912 -10.99236 -10.79681 -10.61104 -10.59234 -10.34605 -10.26831 -9.09114 -8.90835 -8.61115 -8.46357 -7.93268 -6.15618 -4.25273 3.21585 3.28272 3.29968 3.31986 3.94717 4.22591 4.28047 4.37941 4.45287 4.59899 4.99564 5.16608 5.32615 5.56627 5.64457 5.69372 5.79309 5.85872 5.93129 6.06823 6.13285 6.55266 6.77300 6.90540 7.10420 7.39496 7.48558 7.52811 7.65760 7.87562 8.11411 8.63352 8.74238 9.08525 9.42636 10.90314 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052333 B = 0.006957 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.908452 B = 4023.745680 C = 4178.209472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.509 3.491 14 O -0.560 6.560 15 C -0.182 4.182 16 H 0.117 0.883 17 C -0.129 4.129 18 H 0.110 0.890 19 C -0.131 4.131 20 C 0.066 3.934 21 H 0.119 0.881 22 N -0.651 5.651 23 C 0.036 3.964 24 H 0.013 0.987 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.265 0.735 28 H 0.388 0.612 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.355 0.645 32 H 0.071 0.929 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 -6.446 11.425 13.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.350 5.350 13 C 0.294 3.706 14 O -0.440 6.440 15 C -0.205 4.205 16 H 0.135 0.865 17 C -0.148 4.148 18 H 0.128 0.872 19 C -0.169 4.169 20 C -0.045 4.045 21 H 0.137 0.863 22 N -0.282 5.282 23 C -0.093 4.093 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.220 0.780 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.174 0.826 32 H 0.089 0.911 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.488 -5.558 11.971 13.281 hybrid contribution 0.924 -0.880 -2.014 2.385 sum 2.412 -6.438 9.956 12.099 Atomic orbital electron populations 1.22066 0.98461 0.99018 1.00842 1.18747 0.91001 0.93964 0.80154 0.93483 1.21217 1.32523 1.13222 0.90374 0.92137 1.24893 0.94800 0.94924 0.99081 1.69900 1.35840 1.22411 1.23921 0.86444 0.79167 0.79287 0.82186 1.20504 1.21016 1.19875 1.46560 1.64487 1.13511 1.10479 1.20317 0.78504 0.87251 0.84573 1.90629 1.52036 1.16008 1.85287 1.24598 1.01664 0.98900 0.95333 0.86507 1.24723 0.94787 0.97632 0.97706 0.87170 1.23851 1.00627 0.95884 0.96506 1.24399 0.89533 0.96952 0.93609 0.86330 1.64575 1.12352 1.05064 1.46203 1.23577 0.95184 0.91492 0.99090 0.96831 0.95514 0.89116 0.92535 0.77979 0.90668 0.88604 0.82573 0.91107 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.68 2.56 -69.07 -0.18 6.50 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.70 -14.53 5.06 -54.93 -0.28 -14.81 16 13 C 0.51 9.99 5.41 -10.99 -0.06 9.93 16 14 O -0.56 -13.12 14.78 5.56 0.08 -13.04 16 15 C -0.18 -2.64 4.04 -96.37 -0.39 -3.03 16 16 H 0.12 1.48 7.86 -51.93 -0.41 1.07 16 17 C -0.13 -1.59 6.21 -91.85 -0.57 -2.16 16 18 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 19 C -0.13 -1.41 7.85 -30.42 -0.24 -1.65 16 20 C 0.07 0.91 6.27 -69.39 -0.44 0.47 16 21 H 0.12 1.54 8.14 -51.93 -0.42 1.11 16 22 N -0.65 -10.08 7.77 -103.76 -0.81 -10.89 16 23 C 0.04 0.51 7.15 -0.29 0.00 0.51 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.39 7.06 8.54 -40.82 -0.35 6.71 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.10 0.84 7.87 -51.93 -0.41 0.43 16 31 H 0.36 6.35 6.94 -39.29 -0.27 6.07 16 32 H 0.07 1.15 7.53 -51.93 -0.39 0.76 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 269.86 15.07 4.07 4.07 Total: -1.00 -29.73 269.86 -7.87 -37.60 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -4.62 Total: 11.24 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.92 Total: -5.48 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.46 Total: -50.00 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.73 -7.87 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712086477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.359 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds