Wall clock time and date at job start Mon Mar 30 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47475 * 2 1 4 4 C 1.50702 * 109.47042 * 239.99164 * 2 1 3 5 5 H 1.07998 * 120.00308 * 239.99768 * 4 2 1 6 6 C 1.37877 * 119.99561 * 60.00729 * 4 2 1 7 7 N 1.31513 * 120.00292 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99862 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47183 * 89.99687 * 8 6 4 10 10 H 1.48498 * 109.47289 * 209.99952 * 8 6 4 11 11 H 1.48501 * 109.47115 * 329.99926 * 8 6 4 12 12 N 1.46505 * 109.46813 * 119.99752 * 2 1 3 13 13 C 1.34771 * 119.99786 * 275.00023 * 12 2 1 14 14 O 1.21280 * 120.00297 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00088 * 179.97438 * 13 12 2 16 16 H 1.09007 * 113.44606 * 74.46309 * 15 13 12 17 17 C 1.55140 * 114.44182 * 300.63468 * 15 13 12 18 18 H 1.09002 * 120.99419 * 84.79907 * 17 15 13 19 19 C 1.55984 * 81.48811 * 204.98759 * 17 15 13 20 20 C 1.54882 * 114.44518 * 208.34827 * 15 13 12 21 21 H 1.09000 * 119.96130 * 274.06434 * 20 15 13 22 22 N 1.50236 * 103.48309 * 48.13879 * 20 15 13 23 23 C 1.49603 * 100.98540 * 44.02660 * 22 20 15 24 24 H 1.08995 * 109.46638 * 300.00712 * 1 2 3 25 25 H 1.08995 * 109.47028 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46540 * 60.00384 * 1 2 3 27 27 H 0.96999 * 119.99879 * 180.02562 * 7 6 4 28 28 H 0.96997 * 120.00115 * 94.99454 * 12 2 1 29 29 H 1.09001 * 114.52095 * 154.67142 * 19 17 15 30 30 H 1.08998 * 114.52588 * 288.30789 * 19 17 15 31 31 H 1.00897 * 111.00578 * 286.28342 * 22 20 15 32 32 H 1.09000 * 111.44859 * 242.34981 * 23 22 20 33 33 H 1.09006 * 111.44766 * 117.35298 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9430 0.8295 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 1.3448 -2.1619 -4.4122 10 1 2.4875 -0.1407 -5.1120 11 1 3.6309 -1.7570 -3.7118 12 7 2.0184 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1587 2.4114 15 6 2.6487 -0.7286 3.5879 16 1 3.7202 -0.9280 3.5671 17 6 1.7798 -1.9348 4.0319 18 1 1.9240 -2.9221 3.5931 19 6 2.4185 -1.5897 5.4125 20 6 2.1314 -0.1396 4.9236 21 1 2.6571 0.6930 5.3912 22 7 0.6527 -0.0021 4.6965 23 6 0.3424 -1.3098 4.0395 24 1 -0.3632 0.5139 0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5138 -0.8900 27 1 0.7084 1.1606 -3.4845 28 1 2.2489 -1.6317 1.1528 29 1 1.8287 -1.9017 6.2744 30 1 3.4764 -1.8385 5.4965 31 1 0.4520 0.7697 4.0784 32 1 -0.0356 -1.1674 3.0271 33 1 -0.3471 -1.9036 4.6396 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712086477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:11 Heat of formation + Delta-G solvation = -2.880892 kcal Electronic energy + Delta-G solvation = -15911.623969 eV Core-core repulsion = 13359.126884 eV Total energy + Delta-G solvation = -2552.497085 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.62813 -39.54115 -36.69720 -34.34690 -32.25090 -30.99449 -28.42469 -27.46387 -27.14385 -23.10292 -21.85594 -21.42182 -20.42532 -18.84387 -17.65093 -17.48161 -17.24859 -16.61993 -16.12866 -15.12459 -14.71107 -14.38322 -13.85150 -13.70337 -13.49870 -13.12195 -13.05473 -12.89756 -12.79508 -12.64499 -12.32739 -12.22557 -12.13253 -11.76023 -11.56902 -11.14814 -10.66791 -10.41025 -9.84101 -9.58429 -8.21013 -6.39283 1.42536 1.43374 1.54008 1.77175 2.32983 2.60481 3.07407 3.10421 3.22981 3.41678 3.54642 3.90458 4.14736 4.38662 4.53512 4.63615 4.70200 4.80203 4.87170 4.91980 5.04013 5.05066 5.08989 5.15120 5.39423 5.50491 5.57702 5.64352 5.86392 6.06022 6.14807 6.69064 6.94142 7.28907 7.53004 8.85259 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.052333 B = 0.006957 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.908452 B = 4023.745680 C = 4178.209472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.271 3.729 3 H -0.006 1.006 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.263 1.263 12 N -0.700 5.700 13 C 0.504 3.496 14 O -0.604 6.604 15 C -0.181 4.181 16 H 0.146 0.854 17 C -0.117 4.117 18 H 0.137 0.863 19 C -0.103 4.103 20 C 0.049 3.951 21 H 0.122 0.878 22 N -0.662 5.662 23 C 0.029 3.971 24 H 0.009 0.991 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.266 0.734 28 H 0.403 0.597 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.335 0.665 32 H 0.041 0.959 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 -9.130 12.335 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.167 3.833 3 H 0.012 0.988 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.348 5.348 13 C 0.292 3.708 14 O -0.487 6.487 15 C -0.203 4.203 16 H 0.164 0.836 17 C -0.136 4.136 18 H 0.154 0.846 19 C -0.140 4.140 20 C -0.062 4.062 21 H 0.140 0.860 22 N -0.291 5.291 23 C -0.101 4.101 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.238 0.762 29 H 0.104 0.896 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.060 0.940 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.897 -8.290 12.919 15.621 hybrid contribution 0.462 0.029 -2.247 2.295 sum 3.359 -8.260 10.672 13.907 Atomic orbital electron populations 1.21858 0.98340 0.99268 0.99350 1.18309 0.91037 0.91734 0.82207 0.98809 1.21555 1.32693 1.13577 0.90869 0.90891 1.25830 0.94835 0.95542 1.02432 1.70055 1.36992 1.23957 1.24663 0.85322 0.79013 0.78041 0.77835 1.19522 1.21208 1.18763 1.46308 1.64711 1.14087 1.09661 1.21332 0.77147 0.86844 0.85509 1.90606 1.53692 1.18381 1.86020 1.24818 1.03391 0.99829 0.92289 0.83645 1.24798 0.92493 0.97510 0.98790 0.84566 1.23852 1.02474 0.92154 0.95539 1.24719 0.88366 0.99430 0.93673 0.86046 1.64631 1.14006 1.04893 1.45577 1.23653 0.97201 0.91483 0.97729 0.97224 0.94174 0.91616 0.92513 0.76216 0.89645 0.85391 0.84850 0.94005 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.62 9.26 71.98 0.67 -5.96 16 2 C 0.27 14.16 2.56 44.25 0.11 14.27 16 3 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 4 C -0.55 -29.18 8.73 25.60 0.22 -28.96 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -53.12 11.32 21.45 0.24 -52.88 16 8 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 12 N -0.70 -28.91 5.06 -446.08 -2.26 -31.16 16 13 C 0.50 19.85 5.41 87.66 0.47 20.32 16 14 O -0.60 -29.48 14.78 -3.03 -0.04 -29.53 16 15 C -0.18 -4.81 4.04 -14.52 -0.06 -4.87 16 16 H 0.15 3.09 7.86 -2.38 -0.02 3.08 16 17 C -0.12 -2.47 6.21 -11.59 -0.07 -2.54 16 18 H 0.14 2.23 8.14 -2.39 -0.02 2.22 16 19 C -0.10 -1.74 7.85 28.21 0.22 -1.51 16 20 C 0.05 1.24 6.27 41.96 0.26 1.50 16 21 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 22 N -0.66 -20.24 7.77 -482.19 -3.75 -23.99 16 23 C 0.03 0.78 7.15 87.09 0.62 1.40 16 24 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 27 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.40 14.09 8.54 -92.71 -0.79 13.30 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.13 1.44 7.87 -2.39 -0.02 1.42 16 31 H 0.34 12.45 6.94 -89.70 -0.62 11.83 16 32 H 0.04 1.37 7.53 -2.39 -0.02 1.35 16 33 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -67.05 269.86 -1.17 -68.22 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: -0.29 Total: 30.52 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 2.90 Total: -5.16 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -5.76 Total: -108.03 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.04 Total: -29.53 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -67.05 -1.17 -68.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712086477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.337 kcal (2) G-P(sol) polarization free energy of solvation -67.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds