Wall clock time and date at job start Mon Mar 30 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47696 * 2 1 4 4 C 1.53008 * 109.47365 * 119.99841 * 2 1 3 5 5 C 1.50702 * 109.46963 * 185.00066 * 4 2 1 6 6 H 1.07999 * 120.00164 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99441 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99758 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00187 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46690 * 90.00756 * 9 7 5 11 11 H 1.48501 * 109.46952 * 210.00512 * 9 7 5 12 12 H 1.48497 * 109.47142 * 330.00725 * 9 7 5 13 13 N 1.46904 * 109.47376 * 239.99886 * 2 1 3 14 14 C 1.46897 * 110.99971 * 84.99745 * 13 2 1 15 15 C 1.52999 * 109.47159 * 180.02562 * 14 13 2 16 16 C 1.50705 * 109.46991 * 179.97438 * 15 14 13 17 17 C 1.41379 * 128.00562 * 269.95695 * 16 15 14 18 18 N 1.30179 * 106.39170 * 180.02562 * 17 16 15 19 19 O 1.20917 * 111.60766 * 359.97438 * 18 17 16 20 20 C 1.34044 * 111.56675 * 359.97438 * 19 18 17 21 21 H 1.09002 * 109.46815 * 299.99845 * 1 2 3 22 22 H 1.08996 * 109.46947 * 59.99914 * 1 2 3 23 23 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46930 * 305.00160 * 4 2 1 25 25 H 1.09004 * 109.46684 * 65.00075 * 4 2 1 26 26 H 0.96995 * 119.99641 * 179.97438 * 8 7 5 27 27 H 1.00901 * 110.99428 * 321.04567 * 13 2 1 28 28 H 1.08997 * 109.47029 * 60.00161 * 14 13 2 29 29 H 1.08999 * 109.47217 * 300.00516 * 14 13 2 30 30 H 1.09006 * 109.46907 * 60.00181 * 15 14 13 31 31 H 1.08999 * 109.47355 * 300.00282 * 15 14 13 32 32 H 1.07999 * 126.80492 * 0.02562 * 17 16 15 33 33 H 1.07999 * 126.77991 * 179.73774 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1934 2.3578 8 7 5.5412 -1.1002 2.4134 9 14 3.3016 -2.1086 3.6954 10 1 3.1702 -3.5385 3.3169 11 1 4.0454 -2.0018 4.9762 12 1 1.9509 -1.5129 3.8562 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5951 -0.5333 -3.5744 16 6 2.6589 0.4054 -4.7518 17 6 1.6496 0.6778 -5.7036 18 7 2.1513 1.5473 -6.5324 19 8 3.2867 1.8402 -6.2372 20 6 3.6961 1.1839 -5.1424 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6055 -0.2617 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 6.0255 -1.5069 3.1488 27 1 1.4496 -1.4980 -1.4100 28 1 2.7588 1.0461 -2.1182 29 1 1.0871 0.6162 -2.5525 30 1 1.9183 -1.3567 -3.8029 31 1 3.5904 -0.9273 -3.3691 32 1 0.6587 0.2494 -5.7366 33 1 4.6639 1.2571 -4.6688 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718840493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:26 Heat of formation + Delta-G solvation = 50.837071 kcal Electronic energy + Delta-G solvation = -14886.100973 eV Core-core repulsion = 12335.933274 eV Total energy + Delta-G solvation = -2550.167700 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.96701 -37.24477 -35.01959 -32.85058 -32.17490 -30.95410 -28.13839 -27.45340 -23.48904 -22.83524 -22.27820 -20.93922 -19.68316 -17.87975 -17.53754 -16.57439 -15.34868 -15.15129 -14.47419 -14.39608 -13.73105 -13.33426 -13.02591 -12.70551 -12.32164 -12.23026 -11.92488 -11.69108 -11.50130 -11.27083 -10.81709 -10.69424 -10.32474 -10.14600 -9.83538 -9.60544 -9.35130 -9.03263 -8.41816 -7.66760 -5.90618 -3.84324 1.46174 2.20188 3.22664 3.36724 3.44098 3.46450 4.22745 4.55065 4.66842 4.67341 4.96030 5.33280 5.38312 5.44798 5.51608 5.57744 5.61354 5.72452 5.78256 5.87901 6.00601 6.21510 6.25229 6.38274 6.47307 6.79116 7.17133 7.29359 7.77619 7.90405 8.06168 8.17291 8.72678 9.20318 9.72732 11.23553 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041708 B = 0.005302 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.180530 B = 5280.077209 C = 5759.255407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.098 3.902 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.489 4.489 6 H 0.076 0.924 7 C 0.060 3.940 8 N -0.910 5.910 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.269 1.269 13 N -0.663 5.663 14 C 0.067 3.933 15 C -0.044 4.044 16 C -0.191 4.191 17 C -0.010 4.010 18 N -0.372 5.372 19 O 0.093 5.907 20 C -0.057 4.057 21 H 0.056 0.944 22 H 0.040 0.960 23 H 0.051 0.949 24 H 0.016 0.984 25 H 0.011 0.989 26 H 0.259 0.741 27 H 0.330 0.670 28 H 0.071 0.929 29 H 0.019 0.981 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.187 0.813 33 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.701 2.208 -12.566 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.527 4.527 6 H 0.094 0.906 7 C -0.139 4.139 8 N -0.550 5.550 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.293 5.293 14 C -0.063 4.063 15 C -0.082 4.082 16 C -0.196 4.196 17 C -0.188 4.188 18 N -0.076 5.076 19 O 0.028 5.972 20 C -0.139 4.139 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.089 0.911 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.204 0.796 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.346 2.881 -13.383 15.536 hybrid contribution -1.299 -1.013 1.325 2.114 sum -8.645 1.868 -12.058 14.954 Atomic orbital electron populations 1.22594 0.99453 1.01230 1.00936 1.21555 0.89710 0.98318 0.91512 0.91200 1.19617 0.97879 0.95115 0.91611 1.21032 0.89501 1.33737 1.08415 0.90590 1.25018 0.94683 0.96351 0.97877 1.69913 1.06430 1.46320 1.32371 0.86863 0.80325 0.80615 0.81865 1.20569 1.21706 1.19371 1.60469 1.57676 1.08623 1.02539 1.21899 0.98526 0.95922 0.89911 1.19926 1.03926 0.95144 0.89213 1.21525 0.93641 1.03473 1.00919 1.25006 1.02325 0.98198 0.93302 1.73850 0.94269 1.16479 1.23010 1.84791 1.22510 1.52663 1.37266 1.25958 1.02097 0.95816 0.90001 0.92443 0.94044 0.93018 0.96558 0.97026 0.93097 0.85239 0.91059 0.96332 0.90827 0.89116 0.79609 0.76482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.80 9.16 37.16 0.34 -2.46 16 2 C 0.10 1.86 2.53 -67.71 -0.17 1.69 16 3 H 0.07 1.38 7.80 -51.93 -0.40 0.98 16 4 C 0.00 -0.11 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -13.71 9.39 -34.44 -0.32 -14.03 16 6 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 7 C 0.06 1.75 5.47 -17.82 -0.10 1.65 16 8 N -0.91 -28.20 13.96 55.43 0.77 -27.42 16 9 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 N -0.66 -11.45 5.96 -106.72 -0.64 -12.09 16 14 C 0.07 0.96 5.47 -3.83 -0.02 0.93 16 15 C -0.04 -0.52 6.06 -27.88 -0.17 -0.69 16 16 C -0.19 -2.18 5.58 -104.42 -0.58 -2.77 16 17 C -0.01 -0.11 12.16 -17.06 -0.21 -0.32 16 18 N -0.37 -4.88 12.07 30.36 0.37 -4.51 16 19 O 0.09 1.12 11.20 17.17 0.19 1.32 16 20 C -0.06 -0.60 12.26 29.74 0.36 -0.24 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 23 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 24 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.33 5.13 8.47 -39.29 -0.33 4.79 16 28 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 29 H 0.02 0.25 7.44 -51.93 -0.39 -0.14 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.19 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.22 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 282.17 15.07 4.25 4.25 Total: -1.00 -31.79 282.17 -5.51 -37.30 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.82 Total: 0.47 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.97 Total: -16.44 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.50 Total: -44.02 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: 0.19 Total: 1.32 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.79 -5.51 -37.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718840493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.136 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds