Wall clock time and date at job start Mon Mar 30 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47696 * 2 1 4 4 C 1.53008 * 109.47365 * 119.99841 * 2 1 3 5 5 C 1.50702 * 109.46963 * 185.00066 * 4 2 1 6 6 H 1.07999 * 120.00164 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99441 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99758 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00187 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46690 * 90.00756 * 9 7 5 11 11 H 1.48501 * 109.46952 * 210.00512 * 9 7 5 12 12 H 1.48497 * 109.47142 * 330.00725 * 9 7 5 13 13 N 1.46904 * 109.47376 * 239.99886 * 2 1 3 14 14 C 1.46897 * 110.99971 * 84.99745 * 13 2 1 15 15 C 1.52999 * 109.47159 * 180.02562 * 14 13 2 16 16 C 1.50705 * 109.46991 * 179.97438 * 15 14 13 17 17 C 1.41379 * 128.00562 * 269.95695 * 16 15 14 18 18 N 1.30179 * 106.39170 * 180.02562 * 17 16 15 19 19 O 1.20917 * 111.60766 * 359.97438 * 18 17 16 20 20 C 1.34044 * 111.56675 * 359.97438 * 19 18 17 21 21 H 1.09002 * 109.46815 * 299.99845 * 1 2 3 22 22 H 1.08996 * 109.46947 * 59.99914 * 1 2 3 23 23 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.46930 * 305.00160 * 4 2 1 25 25 H 1.09004 * 109.46684 * 65.00075 * 4 2 1 26 26 H 0.96995 * 119.99641 * 179.97438 * 8 7 5 27 27 H 1.00901 * 110.99428 * 321.04567 * 13 2 1 28 28 H 1.08997 * 109.47029 * 60.00161 * 14 13 2 29 29 H 1.08999 * 109.47217 * 300.00516 * 14 13 2 30 30 H 1.09006 * 109.46907 * 60.00181 * 15 14 13 31 31 H 1.08999 * 109.47355 * 300.00282 * 15 14 13 32 32 H 1.07999 * 126.80492 * 0.02562 * 17 16 15 33 33 H 1.07999 * 126.77991 * 179.73774 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1934 2.3578 8 7 5.5412 -1.1002 2.4134 9 14 3.3016 -2.1086 3.6954 10 1 3.1702 -3.5385 3.3169 11 1 4.0454 -2.0018 4.9762 12 1 1.9509 -1.5129 3.8562 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5951 -0.5333 -3.5744 16 6 2.6589 0.4054 -4.7518 17 6 1.6496 0.6778 -5.7036 18 7 2.1513 1.5473 -6.5324 19 8 3.2867 1.8402 -6.2372 20 6 3.6961 1.1839 -5.1424 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6055 -0.2617 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 6.0255 -1.5069 3.1488 27 1 1.4496 -1.4980 -1.4100 28 1 2.7588 1.0461 -2.1182 29 1 1.0871 0.6162 -2.5525 30 1 1.9183 -1.3567 -3.8029 31 1 3.5904 -0.9273 -3.3691 32 1 0.6587 0.2494 -5.7366 33 1 4.6639 1.2571 -4.6688 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718840493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:26 Heat of formation + Delta-G solvation = 29.061446 kcal Electronic energy + Delta-G solvation = -14887.045235 eV Core-core repulsion = 12335.933274 eV Total energy + Delta-G solvation = -2551.111962 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.86667 -38.58868 -36.13590 -34.64226 -33.44099 -32.22514 -29.80940 -28.67247 -24.90919 -24.02337 -23.55148 -21.98090 -21.22093 -18.75258 -18.73563 -18.45740 -16.65667 -16.38130 -16.06824 -15.55384 -15.26161 -14.65656 -14.19269 -14.14723 -13.76556 -13.60698 -13.36672 -13.04160 -12.76627 -12.51993 -12.49606 -11.86033 -11.80260 -11.65254 -11.43071 -11.24664 -11.10314 -10.63915 -10.28442 -8.98355 -8.14057 -6.12487 0.58834 1.31806 1.41007 1.42409 1.53223 2.38804 2.45825 3.18711 3.32213 3.56941 3.81232 4.05631 4.18646 4.32618 4.36678 4.45649 4.55279 4.60544 4.70717 4.81102 4.95241 5.07125 5.15674 5.18678 5.22044 5.32419 5.35352 5.56082 5.80095 6.35689 6.53658 6.79912 6.95740 7.29423 7.48213 9.03397 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041708 B = 0.005302 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.180530 B = 5280.077209 C = 5759.255407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 H 0.052 0.948 4 C -0.004 4.004 5 C -0.488 4.488 6 H 0.034 0.966 7 C -0.005 4.005 8 N -0.960 5.960 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.248 1.248 13 N -0.685 5.685 14 C 0.074 3.926 15 C -0.031 4.031 16 C -0.205 4.205 17 C -0.005 4.005 18 N -0.399 5.399 19 O 0.082 5.918 20 C -0.050 4.050 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.018 0.982 25 H 0.017 0.983 26 H 0.260 0.740 27 H 0.342 0.658 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.211 0.789 33 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 1.467 -12.593 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.008 4.008 3 H 0.070 0.930 4 C -0.042 4.042 5 C -0.527 4.527 6 H 0.053 0.947 7 C -0.200 4.200 8 N -0.603 5.603 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.171 1.171 13 N -0.317 5.317 14 C -0.055 4.055 15 C -0.070 4.070 16 C -0.210 4.210 17 C -0.183 4.183 18 N -0.106 5.106 19 O 0.020 5.980 20 C -0.131 4.131 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.160 0.840 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.227 0.773 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -9.526 2.151 -13.431 16.606 hybrid contribution -0.552 -0.736 1.273 1.570 sum -10.078 1.416 -12.158 15.855 Atomic orbital electron populations 1.22434 0.96028 1.02392 1.02157 1.21324 0.92338 0.96668 0.90474 0.92998 1.19592 0.94466 0.95990 0.94121 1.21319 0.92148 1.32282 1.06929 0.94735 1.25959 0.95503 0.97708 1.00812 1.70085 1.08469 1.48152 1.33594 0.85728 0.79629 0.79388 0.78201 1.19661 1.21779 1.17145 1.60312 1.58471 1.09730 1.03144 1.21832 0.98905 0.95120 0.89682 1.19754 1.03535 0.95365 0.88311 1.21515 0.94201 1.04107 1.01132 1.25421 1.03171 0.97280 0.92454 1.73850 0.94833 1.17738 1.24168 1.84773 1.22448 1.53009 1.37795 1.26488 1.02862 0.94584 0.89139 0.92080 0.92020 0.91844 0.96374 0.96467 0.93138 0.83957 0.93149 0.94826 0.89103 0.90304 0.77270 0.74135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 9.16 71.98 0.66 -4.02 16 2 C 0.10 3.70 2.53 44.92 0.11 3.82 16 3 H 0.05 2.05 7.80 -2.39 -0.02 2.03 16 4 C 0.00 -0.18 3.72 29.85 0.11 -0.06 16 5 C -0.49 -27.79 9.39 25.60 0.24 -27.55 16 6 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 7 C -0.01 -0.31 5.47 84.65 0.46 0.15 16 8 N -0.96 -60.95 13.96 21.45 0.30 -60.65 16 9 Si 0.95 44.58 27.47 68.60 1.88 46.46 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 13 N -0.69 -22.85 5.96 -491.56 -2.93 -25.78 16 14 C 0.07 2.01 5.47 86.30 0.47 2.48 16 15 C -0.03 -0.70 6.06 29.85 0.18 -0.52 16 16 C -0.20 -4.37 5.58 -19.73 -0.11 -4.48 16 17 C 0.00 -0.10 12.16 85.71 1.04 0.94 16 18 N -0.40 -10.03 12.07 -59.25 -0.72 -10.74 16 19 O 0.08 1.92 11.20 71.60 0.80 2.72 16 20 C -0.05 -0.99 12.26 67.17 0.82 -0.16 16 21 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.06 1.45 7.45 -2.39 -0.02 1.43 16 23 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 24 H 0.02 0.81 7.20 -2.39 -0.02 0.80 16 25 H 0.02 0.76 7.57 -2.38 -0.02 0.74 16 26 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.34 9.85 8.47 -89.69 -0.76 9.09 16 28 H 0.05 1.57 8.05 -2.39 -0.02 1.55 16 29 H 0.03 0.82 7.44 -2.39 -0.02 0.81 16 30 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.21 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.24 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -69.10 282.17 3.61 -65.49 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.28 Total: 11.91 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 4.00 Total: -29.40 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -3.35 Total: -97.18 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: 0.80 Total: 2.72 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -69.10 3.61 -65.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718840493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.549 kcal (2) G-P(sol) polarization free energy of solvation -69.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds