Wall clock time and date at job start Mon Mar 30 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47185 * 2 1 4 4 N 1.46493 * 109.47189 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00031 * 265.77773 * 4 3 2 6 6 H 1.07997 * 119.99939 * 146.21010 * 5 4 3 7 7 C 1.38811 * 119.99668 * 326.20722 * 5 4 3 8 8 N 1.31613 * 120.00224 * 337.69289 * 7 5 4 9 9 Si 1.86798 * 119.99504 * 157.69143 * 7 5 4 10 10 H 1.48507 * 109.47193 * 90.00086 * 9 7 5 11 11 H 1.48501 * 109.46875 * 209.99876 * 9 7 5 12 12 H 1.48496 * 109.47457 * 329.99976 * 9 7 5 13 13 C 1.46503 * 120.00114 * 85.77870 * 4 3 2 14 14 C 1.50694 * 109.47507 * 89.99637 * 13 4 3 15 15 C 1.34335 * 126.16448 * 94.99760 * 14 13 4 16 16 O 1.34751 * 107.11143 * 180.26609 * 15 14 13 17 17 C 1.33964 * 107.75771 * 359.57931 * 16 15 14 18 18 C 1.50698 * 125.62192 * 180.17956 * 17 16 15 19 19 N 1.30254 * 108.76068 * 0.43169 * 17 16 15 20 20 H 1.09000 * 109.46940 * 299.99773 * 1 2 3 21 21 H 1.08995 * 109.47145 * 59.99846 * 1 2 3 22 22 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46560 * 240.00608 * 2 1 3 24 24 H 1.08992 * 109.47567 * 120.00427 * 2 1 3 25 25 H 1.09000 * 109.46997 * 60.00261 * 3 2 1 26 26 H 1.09004 * 109.47136 * 300.00306 * 3 2 1 27 27 H 0.96997 * 119.99795 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.46608 * 329.99597 * 13 4 3 29 29 H 1.08999 * 109.47168 * 210.00458 * 13 4 3 30 30 H 1.07994 * 126.44478 * 0.02562 * 15 14 13 31 31 H 1.08997 * 109.47847 * 270.28957 * 18 17 16 32 32 H 1.09003 * 109.46916 * 30.28940 * 18 17 16 33 33 H 1.09007 * 109.47012 * 150.28492 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5296 1.1818 6 1 5.1334 1.0167 1.2984 7 6 3.6724 2.2773 2.2305 8 7 2.7989 3.2320 1.9897 9 14 4.2154 1.9285 3.9834 10 1 5.4045 2.7570 4.3075 11 1 3.1109 2.2605 4.9190 12 1 4.5623 0.4909 4.1174 13 6 4.2370 1.3493 -1.2662 14 6 4.4879 2.7342 -1.8047 15 6 5.6003 3.4654 -1.6242 16 8 5.4123 4.6372 -2.2624 17 6 4.1989 4.6039 -2.8291 18 6 3.5814 5.7088 -3.6468 19 7 3.6386 3.4610 -2.5523 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 2.4374 3.7546 2.7225 28 1 3.6475 0.7810 -1.9858 29 1 5.1894 0.8464 -1.0989 30 1 6.4783 3.1712 -1.0685 31 1 3.0275 6.3804 -2.9909 32 1 4.3672 6.2658 -4.1572 33 1 2.9028 5.2795 -4.3840 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723619361.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:44 Heat of formation + Delta-G solvation = 30.840041 kcal Electronic energy + Delta-G solvation = -15665.324659 eV Core-core repulsion = 13114.289823 eV Total energy + Delta-G solvation = -2551.034836 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.46089 -36.23254 -34.02330 -32.45571 -31.98660 -30.60587 -27.61018 -25.51055 -25.46330 -22.18648 -20.80128 -20.61622 -19.50133 -16.77017 -16.21869 -15.97560 -14.87659 -14.08392 -14.04615 -13.84153 -13.41073 -13.11431 -12.78972 -12.72804 -12.27584 -12.07555 -11.38546 -11.23255 -10.91809 -10.80238 -10.61531 -10.40126 -10.18778 -9.99740 -9.82972 -9.69635 -9.41527 -8.47182 -7.92161 -6.63185 -5.78110 -3.32312 2.25072 3.34164 3.42351 3.44133 3.48286 3.55018 4.48993 4.69124 5.31626 5.44868 5.58980 5.64344 5.76456 5.89213 5.93704 5.95286 6.02972 6.29744 6.41663 6.55837 6.65378 6.70098 6.74111 6.79324 6.95362 7.03780 7.16724 7.38503 7.77159 7.89499 8.49841 8.57665 9.18576 9.81727 10.39444 11.21401 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.010145 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.420572 B = 2759.379116 C = 3478.261032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.145 3.855 4 N -0.571 5.571 5 C -0.261 4.261 6 H 0.064 0.936 7 C 0.011 3.989 8 N -0.881 5.881 9 Si 0.896 3.104 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.214 3.786 14 C 0.000 4.000 15 C -0.086 4.086 16 O -0.217 6.217 17 C 0.160 3.840 18 C -0.048 4.048 19 N -0.471 5.471 20 H 0.049 0.951 21 H 0.045 0.955 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.026 0.974 27 H 0.254 0.746 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.205 0.795 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.068 0.464 -7.754 7.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.019 3.981 4 N -0.290 5.290 5 C -0.391 4.391 6 H 0.081 0.919 7 C -0.190 4.190 8 N -0.523 5.523 9 Si 0.725 3.275 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.202 1.202 13 C 0.086 3.914 14 C -0.123 4.123 15 C -0.156 4.156 16 O -0.104 6.104 17 C -0.047 4.047 18 C -0.105 4.105 19 N -0.203 5.203 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.222 0.778 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.401 0.437 -7.824 7.846 hybrid contribution 0.959 0.240 1.415 1.726 sum 1.359 0.677 -6.409 6.586 Atomic orbital electron populations 1.21683 0.97537 0.99834 1.01134 1.22069 0.93720 1.01641 1.00467 1.21023 0.82792 0.92095 1.02158 1.44050 1.01383 1.83467 1.00061 1.19104 1.06221 1.24395 0.89341 0.91876 1.25144 0.99691 0.94958 0.99196 1.70024 1.32663 1.18919 1.30734 0.86411 0.77798 0.78316 0.84932 1.21364 1.21491 1.20233 1.19465 0.96645 0.86789 0.88452 1.23302 0.89499 1.02222 0.97303 1.24593 1.03333 0.84087 1.03587 1.84302 1.35050 1.37432 1.53598 1.26068 0.82157 0.96896 0.99540 1.20062 0.99975 0.92833 0.97654 1.70291 1.31163 1.03363 1.15469 0.93175 0.93562 0.94192 0.94112 0.92624 0.88561 0.95515 0.93596 0.92900 0.92107 0.77829 0.89659 0.90274 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.91 37.16 0.37 -2.17 16 2 C -0.14 -2.90 6.26 -26.73 -0.17 -3.06 16 3 C 0.15 3.57 5.25 -4.05 -0.02 3.55 16 4 N -0.57 -14.44 2.44 -174.61 -0.43 -14.86 16 5 C -0.26 -7.05 9.49 -15.06 -0.14 -7.20 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.30 4.93 -17.43 -0.09 0.21 16 8 N -0.88 -25.77 11.32 55.49 0.63 -25.14 16 9 Si 0.90 21.52 29.61 -169.99 -5.03 16.49 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 C 0.21 4.72 6.23 -5.19 -0.03 4.69 16 14 C 0.00 -0.01 6.69 -82.81 -0.55 -0.56 16 15 C -0.09 -1.75 12.08 29.36 0.35 -1.40 16 16 O -0.22 -4.31 10.77 5.37 0.06 -4.26 16 17 C 0.16 3.06 8.34 -12.95 -0.11 2.95 16 18 C -0.05 -0.61 10.51 36.00 0.38 -0.24 16 19 N -0.47 -10.41 11.29 -7.36 -0.08 -10.49 16 20 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.10 2.67 5.32 -51.93 -0.28 2.40 16 26 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 28 H 0.05 1.10 8.07 -51.93 -0.42 0.68 16 29 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 30 H 0.21 3.58 8.06 -52.49 -0.42 3.15 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -31.74 285.41 -5.45 -37.20 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.89 Total: -0.01 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.01 Total: -3.23 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.12 Total: -50.50 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: 0.06 Total: -4.26 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.74 -5.45 -37.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723619361.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.038 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds