Wall clock time and date at job start Mon Mar 30 2020 03:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47185 * 2 1 4 4 N 1.46493 * 109.47189 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00031 * 265.77773 * 4 3 2 6 6 H 1.07997 * 119.99939 * 146.21010 * 5 4 3 7 7 C 1.38811 * 119.99668 * 326.20722 * 5 4 3 8 8 N 1.31613 * 120.00224 * 337.69289 * 7 5 4 9 9 Si 1.86798 * 119.99504 * 157.69143 * 7 5 4 10 10 H 1.48507 * 109.47193 * 90.00086 * 9 7 5 11 11 H 1.48501 * 109.46875 * 209.99876 * 9 7 5 12 12 H 1.48496 * 109.47457 * 329.99976 * 9 7 5 13 13 C 1.46503 * 120.00114 * 85.77870 * 4 3 2 14 14 C 1.50694 * 109.47507 * 89.99637 * 13 4 3 15 15 C 1.34335 * 126.16448 * 94.99760 * 14 13 4 16 16 O 1.34751 * 107.11143 * 180.26609 * 15 14 13 17 17 C 1.33964 * 107.75771 * 359.57931 * 16 15 14 18 18 C 1.50698 * 125.62192 * 180.17956 * 17 16 15 19 19 N 1.30254 * 108.76068 * 0.43169 * 17 16 15 20 20 H 1.09000 * 109.46940 * 299.99773 * 1 2 3 21 21 H 1.08995 * 109.47145 * 59.99846 * 1 2 3 22 22 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46560 * 240.00608 * 2 1 3 24 24 H 1.08992 * 109.47567 * 120.00427 * 2 1 3 25 25 H 1.09000 * 109.46997 * 60.00261 * 3 2 1 26 26 H 1.09004 * 109.47136 * 300.00306 * 3 2 1 27 27 H 0.96997 * 119.99795 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.46608 * 329.99597 * 13 4 3 29 29 H 1.08999 * 109.47168 * 210.00458 * 13 4 3 30 30 H 1.07994 * 126.44478 * 0.02562 * 15 14 13 31 31 H 1.08997 * 109.47847 * 270.28957 * 18 17 16 32 32 H 1.09003 * 109.46916 * 30.28940 * 18 17 16 33 33 H 1.09007 * 109.47012 * 150.28492 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5296 1.1818 6 1 5.1334 1.0167 1.2984 7 6 3.6724 2.2773 2.2305 8 7 2.7989 3.2320 1.9897 9 14 4.2154 1.9285 3.9834 10 1 5.4045 2.7570 4.3075 11 1 3.1109 2.2605 4.9190 12 1 4.5623 0.4909 4.1174 13 6 4.2370 1.3493 -1.2662 14 6 4.4879 2.7342 -1.8047 15 6 5.6003 3.4654 -1.6242 16 8 5.4123 4.6372 -2.2624 17 6 4.1989 4.6039 -2.8291 18 6 3.5814 5.7088 -3.6468 19 7 3.6386 3.4610 -2.5523 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 2.4374 3.7546 2.7225 28 1 3.6475 0.7810 -1.9858 29 1 5.1894 0.8464 -1.0989 30 1 6.4783 3.1712 -1.0685 31 1 3.0275 6.3804 -2.9909 32 1 4.3672 6.2658 -4.1572 33 1 2.9028 5.2795 -4.3840 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723619361.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:43 Heat of formation + Delta-G solvation = 9.465296 kcal Electronic energy + Delta-G solvation = -15666.251538 eV Core-core repulsion = 13114.289823 eV Total energy + Delta-G solvation = -2551.961715 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.02544 -38.10144 -35.65559 -34.18442 -33.65901 -32.25280 -29.13143 -27.43957 -27.08357 -24.00236 -22.38318 -22.24057 -21.24909 -18.71595 -17.83857 -17.54713 -16.80892 -15.91117 -15.68166 -15.52758 -14.94652 -14.78392 -14.43328 -13.82536 -13.71310 -13.39419 -13.18792 -12.95255 -12.73910 -12.61910 -12.34272 -12.18141 -11.84889 -11.84139 -11.63442 -11.34292 -11.28208 -10.52266 -9.50998 -8.65252 -7.83684 -5.41858 0.71170 1.44263 1.47609 1.56937 1.90214 2.04615 2.51563 3.23071 3.34094 3.79473 4.14574 4.26104 4.34285 4.50435 4.56004 4.66009 4.71109 4.74270 4.88117 4.92650 4.99754 5.12387 5.14967 5.22721 5.28636 5.37067 5.55800 5.60454 5.67430 5.91506 6.43738 6.99545 7.14207 7.83072 8.37272 9.13689 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.010145 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.420572 B = 2759.379116 C = 3478.261032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.151 3.849 4 N -0.586 5.586 5 C -0.264 4.264 6 H 0.069 0.931 7 C -0.040 4.040 8 N -0.918 5.918 9 Si 0.959 3.041 10 H -0.284 1.284 11 H -0.295 1.295 12 H -0.268 1.268 13 C 0.215 3.785 14 C -0.029 4.029 15 C -0.090 4.090 16 O -0.220 6.220 17 C 0.165 3.835 18 C -0.047 4.047 19 N -0.511 5.511 20 H 0.041 0.959 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.010 0.990 27 H 0.249 0.751 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.227 0.773 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 0.260 -8.329 8.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.025 3.975 4 N -0.305 5.305 5 C -0.394 4.394 6 H 0.086 0.914 7 C -0.237 4.237 8 N -0.562 5.562 9 Si 0.787 3.213 10 H -0.211 1.211 11 H -0.221 1.221 12 H -0.192 1.192 13 C 0.088 3.912 14 C -0.150 4.150 15 C -0.160 4.160 16 O -0.107 6.107 17 C -0.042 4.042 18 C -0.104 4.104 19 N -0.242 5.242 20 H 0.060 0.940 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.244 0.756 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.825 0.207 -8.419 8.462 hybrid contribution 0.846 0.342 1.463 1.724 sum 1.671 0.550 -6.956 7.175 Atomic orbital electron populations 1.21626 0.95049 1.01741 1.01105 1.21903 0.95887 0.98724 1.00306 1.20869 0.82954 0.93995 0.99672 1.44223 1.01649 1.83808 1.00831 1.19406 1.06190 1.23532 0.90251 0.91367 1.25839 1.00254 0.94977 1.02605 1.70180 1.34475 1.20284 1.31280 0.85428 0.77018 0.78424 0.80476 1.21101 1.22131 1.19232 1.19510 0.97147 0.87267 0.87284 1.23320 0.90555 1.02531 0.98615 1.25001 1.03696 0.83992 1.03296 1.84327 1.35585 1.37123 1.53678 1.27324 0.81463 0.97231 0.98174 1.20411 1.01102 0.91418 0.97490 1.70271 1.32111 1.04911 1.16935 0.93977 0.92872 0.91259 0.92996 0.93863 0.91756 0.97156 0.94225 0.92331 0.90449 0.75638 0.88687 0.86981 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.91 71.98 0.71 -3.95 16 2 C -0.13 -5.27 6.26 30.60 0.19 -5.08 16 3 C 0.15 7.55 5.25 86.38 0.45 8.00 16 4 N -0.59 -29.74 2.44 -706.35 -1.72 -31.46 16 5 C -0.26 -14.24 9.49 84.03 0.80 -13.44 16 6 H 0.07 3.54 7.92 -2.91 -0.02 3.52 16 7 C -0.04 -2.21 4.93 84.86 0.42 -1.79 16 8 N -0.92 -54.80 11.32 21.65 0.25 -54.56 16 9 Si 0.96 44.50 29.61 68.60 2.03 46.53 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.21 9.40 6.23 85.63 0.53 9.94 16 14 C -0.03 -1.27 6.69 41.26 0.28 -0.99 16 15 C -0.09 -3.60 12.08 66.93 0.81 -2.79 16 16 O -0.22 -8.48 10.77 -3.69 -0.04 -8.52 16 17 C 0.17 6.10 8.34 88.34 0.74 6.84 16 18 C -0.05 -1.09 10.51 71.24 0.75 -0.34 16 19 N -0.51 -22.43 11.29 -291.99 -3.30 -25.73 16 20 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 3.68 5.32 -2.39 -0.01 3.67 16 26 H 0.01 0.52 8.10 -2.38 -0.02 0.50 16 27 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.06 2.43 8.07 -2.38 -0.02 2.41 16 29 H 0.08 3.05 8.04 -2.39 -0.02 3.03 16 30 H 0.23 7.66 8.06 -2.91 -0.02 7.64 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -68.49 285.41 3.97 -64.52 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.08 Total: 12.81 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.68 Total: -3.60 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -4.77 Total: -111.74 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.04 Total: -8.52 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.49 3.97 -64.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723619361.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.984 kcal (2) G-P(sol) polarization free energy of solvation -68.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds