Wall clock time and date at job start Mon Mar 30 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30259 * 125.61896 * 2 1 4 4 C 1.34474 * 108.70085 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.16683 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47008 * 274.99630 * 5 4 3 7 7 C 1.36929 * 120.00079 * 269.99821 * 6 5 4 8 8 H 1.08004 * 119.99899 * 144.78688 * 7 6 5 9 9 C 1.38807 * 120.00253 * 324.79154 * 7 6 5 10 10 N 1.31624 * 120.00452 * 157.30184 * 9 7 6 11 11 Si 1.86798 * 119.99973 * 337.30022 * 9 7 6 12 12 H 1.48505 * 109.47424 * 95.35149 * 11 9 7 13 13 H 1.48501 * 109.47623 * 215.35440 * 11 9 7 14 14 H 1.48505 * 109.47118 * 335.35134 * 11 9 7 15 15 C 1.46503 * 119.99680 * 89.99879 * 6 5 4 16 16 C 1.53004 * 109.46767 * 121.60271 * 15 6 5 17 17 C 1.52995 * 109.47258 * 241.60251 * 15 6 5 18 18 C 1.34330 * 107.67041 * 359.97438 * 4 3 2 19 19 O 1.33962 * 125.61996 * 180.28684 * 2 1 3 20 20 H 1.09000 * 109.47254 * 89.99661 * 1 2 3 21 21 H 1.08998 * 109.47431 * 210.00143 * 1 2 3 22 22 H 1.09004 * 109.47285 * 330.00058 * 1 2 3 23 23 H 1.08998 * 109.47302 * 34.99936 * 5 4 3 24 24 H 1.09000 * 109.47225 * 154.99793 * 5 4 3 25 25 H 0.96994 * 120.00098 * 179.97438 * 10 9 7 26 26 H 1.08999 * 109.47194 * 1.60403 * 15 6 5 27 27 H 1.09000 * 109.46769 * 65.32272 * 16 15 6 28 28 H 1.09001 * 109.46618 * 185.31495 * 16 15 6 29 29 H 1.08990 * 109.47306 * 305.31867 * 16 15 6 30 30 H 1.09003 * 109.46728 * 55.15792 * 17 15 6 31 31 H 1.08995 * 109.47548 * 175.16469 * 17 15 6 32 32 H 1.09005 * 109.46858 * 295.16626 * 17 15 6 33 33 H 1.08003 * 126.44410 * 180.02562 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6676 0.0006 5 6 4.7570 1.5727 0.0013 6 7 5.0759 1.9624 -1.3745 7 6 5.9345 1.2001 -2.1205 8 1 5.7726 1.0869 -3.1823 9 6 7.0129 0.5726 -1.5121 10 7 7.5649 -0.4810 -2.0756 11 14 7.6808 1.2236 0.1064 12 1 7.0717 0.4704 1.2321 13 1 9.1557 1.0535 0.1376 14 1 7.3459 2.6646 0.2363 15 6 4.4760 3.1678 -1.9520 16 6 5.5832 4.1277 -2.3921 17 6 3.6234 2.7833 -3.1627 18 6 3.5698 -0.6756 0.0015 19 8 2.2872 -1.0890 -0.0055 20 1 -0.3634 0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 4.5416 2.4639 0.5908 24 1 5.6067 1.0462 0.4360 25 1 8.3187 -0.9192 -1.6506 26 1 3.8485 3.6548 -1.2056 27 1 6.1528 3.6771 -3.2050 28 1 5.1389 5.0623 -2.7344 29 1 6.2467 4.3274 -1.5508 30 1 2.8890 2.0341 -2.8667 31 1 3.1090 3.6669 -3.5403 32 1 4.2647 2.3746 -3.9437 33 1 4.4469 -1.3057 0.0025 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723620657.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:41 Heat of formation + Delta-G solvation = 42.567671 kcal Electronic energy + Delta-G solvation = -16009.608276 eV Core-core repulsion = 13459.081988 eV Total energy + Delta-G solvation = -2550.526288 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.64474 -36.87322 -34.20128 -32.54380 -31.93341 -30.30967 -27.49623 -26.24291 -25.61445 -23.36907 -20.96917 -20.63938 -19.37679 -16.92585 -16.24382 -15.92740 -15.21320 -14.73956 -14.20683 -13.70889 -13.26752 -13.02928 -12.91475 -12.49669 -12.34467 -12.15663 -11.93401 -11.67707 -11.33855 -10.78530 -10.57243 -10.43683 -10.35269 -10.12221 -9.85882 -9.80362 -9.45232 -8.54151 -8.06936 -6.90301 -6.01413 -3.39455 2.09771 3.23554 3.31939 3.34273 3.45728 3.49796 4.48552 4.52288 5.05535 5.28719 5.34051 5.48883 5.58850 5.72126 5.85185 5.89775 6.14178 6.25557 6.28444 6.38682 6.42407 6.55412 6.61505 6.62897 6.73645 6.76754 6.98171 7.15137 7.22499 8.02610 8.35654 8.42144 8.97057 9.69851 10.11325 11.14168 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024888 B = 0.011691 C = 0.009360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.778895 B = 2394.350317 C = 2990.764292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.157 3.843 3 N -0.473 5.473 4 C -0.010 4.010 5 C 0.210 3.790 6 N -0.591 5.591 7 C -0.255 4.255 8 H 0.081 0.919 9 C 0.033 3.967 10 N -0.899 5.899 11 Si 0.868 3.132 12 H -0.286 1.286 13 H -0.301 1.301 14 H -0.266 1.266 15 C 0.171 3.829 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.067 4.067 19 O -0.213 6.213 20 H 0.085 0.915 21 H 0.080 0.920 22 H 0.094 0.906 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.263 0.737 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 2.576 4.265 11.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.049 4.049 3 N -0.205 5.205 4 C -0.132 4.132 5 C 0.083 3.917 6 N -0.312 5.312 7 C -0.384 4.384 8 H 0.098 0.902 9 C -0.167 4.167 10 N -0.541 5.541 11 Si 0.699 3.301 12 H -0.214 1.214 13 H -0.229 1.229 14 H -0.191 1.191 15 C 0.065 3.935 16 C -0.210 4.210 17 C -0.208 4.208 18 C -0.138 4.138 19 O -0.100 6.100 20 H 0.103 0.897 21 H 0.099 0.901 22 H 0.112 0.888 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -10.342 3.049 4.231 11.583 hybrid contribution 0.912 -0.634 0.760 1.346 sum -9.430 2.415 4.991 10.940 Atomic orbital electron populations 1.20072 0.82304 1.04195 1.03971 1.26106 0.96213 0.79533 1.03084 1.70293 1.02223 1.30149 1.17792 1.23060 0.93573 0.93756 1.02851 1.19684 0.89480 0.94416 0.88121 1.44246 1.50898 1.24908 1.11140 1.18733 1.02288 1.23474 0.93868 0.90176 1.25400 0.96781 0.96969 0.97579 1.69882 1.25082 1.18385 1.40732 0.87078 0.77685 0.80863 0.84506 1.21433 1.22888 1.19082 1.20372 0.92643 0.86659 0.93871 1.22114 0.99592 0.97575 1.01693 1.22092 0.99620 0.99570 0.99540 1.24849 0.83875 0.96814 1.08219 1.84351 1.17465 1.37669 1.70537 0.89672 0.90113 0.88778 0.92480 0.91457 0.92743 0.92827 0.92129 0.94369 0.93416 0.93542 0.94400 0.92785 0.77215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.53 10.51 36.00 0.38 -0.15 16 2 C 0.16 2.74 8.34 -12.95 -0.11 2.63 16 3 N -0.47 -9.53 11.29 -7.36 -0.08 -9.61 16 4 C -0.01 -0.22 6.69 -82.81 -0.55 -0.77 16 5 C 0.21 4.74 5.02 -5.19 -0.03 4.71 16 6 N -0.59 -14.05 2.05 -167.02 -0.34 -14.39 16 7 C -0.25 -6.91 8.75 -15.06 -0.13 -7.04 16 8 H 0.08 2.38 7.16 -52.48 -0.38 2.00 16 9 C 0.03 0.91 5.31 -17.43 -0.09 0.81 16 10 N -0.90 -26.57 13.97 55.49 0.78 -25.79 16 11 Si 0.87 21.46 24.96 -169.99 -4.24 17.21 16 12 H -0.29 -6.80 6.66 56.52 0.38 -6.42 16 13 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.17 3.55 3.36 -67.93 -0.23 3.32 16 16 C -0.15 -2.92 9.05 37.16 0.34 -2.58 16 17 C -0.15 -2.94 9.10 37.16 0.34 -2.61 16 18 C -0.07 -1.38 12.08 29.35 0.35 -1.02 16 19 O -0.21 -4.04 10.78 5.36 0.06 -3.98 16 20 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 1.20 7.91 -51.93 -0.41 0.79 16 24 H 0.07 1.59 2.97 -51.93 -0.15 1.44 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.05 1.07 7.78 -51.93 -0.40 0.67 16 27 H 0.06 1.25 7.80 -51.93 -0.41 0.84 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 1.13 7.24 -51.93 -0.38 0.75 16 33 H 0.21 4.14 8.06 -52.48 -0.42 3.72 16 LS Contribution 276.37 15.07 4.16 4.16 Total: -1.00 -30.79 276.37 -4.07 -34.86 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.67 Total: 0.24 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 0.27 Total: -2.71 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.35 Total: -49.79 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: 0.06 Total: -3.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.24 Total: 17.21 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.79 -4.07 -34.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723620657.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.427 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds