Wall clock time and date at job start Mon Mar 30 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48737 * 110.99707 * 2 1 4 4 H 1.08994 * 112.22577 * 43.96627 * 3 2 1 5 5 C 1.54544 * 104.87677 * 281.88881 * 3 2 1 6 6 C 1.55849 * 104.17810 * 335.20821 * 5 3 2 7 7 C 1.48733 * 111.00459 * 245.20745 * 2 1 3 8 8 H 1.08997 * 112.22089 * 316.64202 * 7 2 1 9 9 C 1.53466 * 107.27723 * 192.38727 * 7 2 1 10 10 N 1.47152 * 108.27328 * 301.82310 * 9 7 2 11 11 C 1.34777 * 120.68112 * 227.29128 * 10 9 7 12 12 O 1.21690 * 119.99842 * 184.34117 * 11 10 9 13 13 C 1.46373 * 120.00378 * 4.33805 * 11 10 9 14 14 H 1.08005 * 119.99717 * 354.25670 * 13 11 10 15 15 C 1.40047 * 120.00245 * 174.25987 * 13 11 10 16 16 N 1.30671 * 120.00065 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99992 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47387 * 269.99874 * 17 15 13 19 19 H 1.48503 * 109.46950 * 29.99782 * 17 15 13 20 20 H 1.48497 * 109.47244 * 149.99330 * 17 15 13 21 21 C 1.47155 * 118.63487 * 47.01796 * 10 9 7 22 22 H 1.09002 * 109.46809 * 60.00388 * 1 2 3 23 23 H 1.09003 * 109.46775 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47674 * 300.00057 * 1 2 3 25 25 H 1.08999 * 110.34779 * 93.86792 * 5 3 2 26 26 H 1.09007 * 110.34757 * 216.13429 * 5 3 2 27 27 H 1.08998 * 110.26565 * 241.07120 * 6 5 3 28 28 H 1.09000 * 110.28351 * 118.90463 * 6 5 3 29 29 H 1.09002 * 109.69246 * 182.08254 * 9 7 2 30 30 H 1.08994 * 109.57419 * 61.49663 * 9 7 2 31 31 H 0.97002 * 119.99794 * 180.02562 * 16 15 13 32 32 H 1.08996 * 109.74542 * 72.54389 * 21 10 9 33 33 H 1.08999 * 109.74502 * 193.22008 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3886 0.0000 4 1 1.4717 2.0337 0.7005 5 6 1.8568 1.8693 -1.4616 6 6 1.8570 0.5541 -2.2978 7 6 2.0021 -0.5822 -1.2605 8 1 1.4650 -1.4828 -1.5581 9 6 3.5017 -0.8309 -1.0492 10 7 4.1376 0.4503 -0.7036 11 6 5.2733 0.8413 -1.3150 12 8 5.8316 1.8643 -0.9647 13 6 5.8352 0.0357 -2.4002 14 1 5.3934 -0.9179 -2.6493 15 6 6.9456 0.5012 -3.1154 16 7 7.4798 1.6551 -2.8143 17 14 7.6631 -0.5274 -4.4998 18 1 8.7061 -1.4328 -3.9545 19 1 6.5855 -1.3344 -5.1265 20 1 8.2678 0.3673 -5.5191 21 6 3.5048 1.2985 0.3189 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.9170 2.4056 -1.5927 26 1 2.6984 2.5050 -1.7369 27 1 2.6999 0.5463 -2.9889 28 1 0.9184 0.4525 -2.8425 29 1 3.9413 -1.2249 -1.9655 30 1 3.6427 -1.5432 -0.2364 31 1 8.2487 1.9777 -3.3100 32 1 3.6462 0.8549 1.3044 33 1 3.9472 2.2944 0.2964 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723714876.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:03 Heat of formation + Delta-G solvation = -16.792424 kcal Electronic energy + Delta-G solvation = -16400.735145 eV Core-core repulsion = 13847.634810 eV Total energy + Delta-G solvation = -2553.100335 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.12173 -36.73323 -33.28687 -32.46937 -31.05302 -30.62087 -27.27958 -25.97348 -23.91565 -23.58121 -20.28646 -19.99386 -18.27301 -16.72237 -15.74414 -15.33383 -14.86655 -14.39482 -14.15103 -13.60976 -13.56091 -12.71088 -12.45515 -12.34269 -12.10506 -11.92082 -11.43184 -11.15360 -11.07035 -10.80085 -10.76705 -10.48769 -10.29359 -10.17393 -9.95300 -9.89100 -8.85028 -8.30848 -7.54923 -7.11706 -6.18636 -4.62947 3.13779 3.20800 3.23265 4.08943 4.22949 4.58733 4.60174 5.03711 5.17215 5.30607 5.42752 5.62308 5.63231 5.68838 5.76067 5.86454 5.95344 6.03145 6.08190 6.23164 6.32839 6.44489 6.54308 6.59071 6.73601 6.74759 7.14964 7.32959 7.46376 7.66041 8.16260 8.40261 9.03485 9.48720 10.59650 10.78677 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.043651 B = 0.009045 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.293204 B = 3095.007135 C = 3369.832963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.508 5.508 3 C 0.047 3.953 4 H 0.088 0.912 5 C -0.138 4.138 6 C -0.140 4.140 7 C 0.046 3.954 8 H 0.091 0.909 9 C 0.136 3.864 10 N -0.637 5.637 11 C 0.562 3.438 12 O -0.580 6.580 13 C -0.545 4.545 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.769 5.769 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.265 1.265 20 H -0.280 1.280 21 C 0.135 3.865 22 H 0.026 0.974 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.047 0.953 33 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 -3.861 1.129 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.231 5.231 3 C -0.062 4.062 4 H 0.106 0.894 5 C -0.177 4.177 6 C -0.179 4.179 7 C -0.064 4.064 8 H 0.109 0.891 9 C 0.011 3.989 10 N -0.375 5.375 11 C 0.367 3.633 12 O -0.463 6.463 13 C -0.581 4.581 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.398 5.398 17 Si 0.729 3.271 18 H -0.197 1.197 19 H -0.189 1.189 20 H -0.205 1.205 21 C 0.011 3.989 22 H 0.044 0.956 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.924 -3.458 1.782 11.596 hybrid contribution -0.156 -0.095 -1.432 1.444 sum -11.080 -3.553 0.349 11.641 Atomic orbital electron populations 1.22435 0.89329 1.01370 1.00277 1.65443 1.07050 1.15722 1.34879 1.23487 0.97392 0.89216 0.96139 0.89364 1.22982 1.01146 0.97902 0.95640 1.23011 1.01417 0.94592 0.98847 1.23457 0.97579 0.97112 0.88229 0.89104 1.21504 0.89269 0.87189 1.00903 1.48147 1.27377 1.19861 1.42122 1.18202 0.77904 0.85398 0.81758 1.90591 1.60654 1.27968 1.67064 1.20965 1.14429 1.05925 1.16802 0.91010 1.25718 0.95786 0.94506 0.97139 1.70016 1.17788 1.16870 1.35091 0.86423 0.79644 0.80181 0.80840 1.19715 1.18906 1.20523 1.21306 0.89187 0.96881 0.91574 0.95569 0.91868 0.91960 0.93015 0.90396 0.89894 0.93071 0.88913 0.93439 0.92154 0.93500 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.44 60.06 0.57 0.75 16 2 N -0.51 -7.92 5.26 -221.19 -1.16 -9.08 16 3 C 0.05 0.78 3.62 -65.42 -0.24 0.55 16 4 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 5 C -0.14 -2.34 5.69 -24.40 -0.14 -2.47 16 6 C -0.14 -2.32 5.54 -24.40 -0.14 -2.45 16 7 C 0.05 0.73 3.67 -65.65 -0.24 0.49 16 8 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 9 C 0.14 2.61 5.77 -3.44 -0.02 2.59 16 10 N -0.64 -14.59 2.26 -173.46 -0.39 -14.98 16 11 C 0.56 15.88 7.62 -12.99 -0.10 15.78 16 12 O -0.58 -18.75 14.53 5.20 0.08 -18.67 16 13 C -0.54 -15.09 8.84 -35.63 -0.32 -15.40 16 14 H 0.07 1.81 5.73 -52.48 -0.30 1.51 16 15 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 16 N -0.77 -22.95 11.84 55.55 0.66 -22.29 16 17 Si 0.90 19.96 29.56 -169.99 -5.02 14.93 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 C 0.14 2.75 5.87 -3.22 -0.02 2.73 16 22 H 0.03 0.32 7.01 -51.93 -0.36 -0.05 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.57 7.84 -51.93 -0.41 1.16 16 27 H 0.08 1.60 7.83 -51.93 -0.41 1.19 16 28 H 0.05 0.74 8.05 -51.93 -0.42 0.32 16 29 H 0.09 1.83 5.43 -51.93 -0.28 1.54 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.84 7.14 -51.93 -0.37 1.47 16 LS Contribution 260.56 15.07 3.93 3.93 Total: -1.00 -32.71 260.56 -7.29 -40.00 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.64 Total: 1.26 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.73 Total: 4.90 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: -0.90 Total: -46.35 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.08 Total: -18.67 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.71 -7.29 -40.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723714876.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.205 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds