Wall clock time and date at job start Mon Mar 30 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48737 * 110.99707 * 2 1 4 4 H 1.08994 * 112.22577 * 43.96627 * 3 2 1 5 5 C 1.54544 * 104.87677 * 281.88881 * 3 2 1 6 6 C 1.55849 * 104.17810 * 335.20821 * 5 3 2 7 7 C 1.48733 * 111.00459 * 245.20745 * 2 1 3 8 8 H 1.08997 * 112.22089 * 316.64202 * 7 2 1 9 9 C 1.53466 * 107.27723 * 192.38727 * 7 2 1 10 10 N 1.47152 * 108.27328 * 301.82310 * 9 7 2 11 11 C 1.34777 * 120.68112 * 227.29128 * 10 9 7 12 12 O 1.21690 * 119.99842 * 184.34117 * 11 10 9 13 13 C 1.46373 * 120.00378 * 4.33805 * 11 10 9 14 14 H 1.08005 * 119.99717 * 354.25670 * 13 11 10 15 15 C 1.40047 * 120.00245 * 174.25987 * 13 11 10 16 16 N 1.30671 * 120.00065 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99992 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47387 * 269.99874 * 17 15 13 19 19 H 1.48503 * 109.46950 * 29.99782 * 17 15 13 20 20 H 1.48497 * 109.47244 * 149.99330 * 17 15 13 21 21 C 1.47155 * 118.63487 * 47.01796 * 10 9 7 22 22 H 1.09002 * 109.46809 * 60.00388 * 1 2 3 23 23 H 1.09003 * 109.46775 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47674 * 300.00057 * 1 2 3 25 25 H 1.08999 * 110.34779 * 93.86792 * 5 3 2 26 26 H 1.09007 * 110.34757 * 216.13429 * 5 3 2 27 27 H 1.08998 * 110.26565 * 241.07120 * 6 5 3 28 28 H 1.09000 * 110.28351 * 118.90463 * 6 5 3 29 29 H 1.09002 * 109.69246 * 182.08254 * 9 7 2 30 30 H 1.08994 * 109.57419 * 61.49663 * 9 7 2 31 31 H 0.97002 * 119.99794 * 180.02562 * 16 15 13 32 32 H 1.08996 * 109.74542 * 72.54389 * 21 10 9 33 33 H 1.08999 * 109.74502 * 193.22008 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3886 0.0000 4 1 1.4717 2.0337 0.7005 5 6 1.8568 1.8693 -1.4616 6 6 1.8570 0.5541 -2.2978 7 6 2.0021 -0.5822 -1.2605 8 1 1.4650 -1.4828 -1.5581 9 6 3.5017 -0.8309 -1.0492 10 7 4.1376 0.4503 -0.7036 11 6 5.2733 0.8413 -1.3150 12 8 5.8316 1.8643 -0.9647 13 6 5.8352 0.0357 -2.4002 14 1 5.3934 -0.9179 -2.6493 15 6 6.9456 0.5012 -3.1154 16 7 7.4798 1.6551 -2.8143 17 14 7.6631 -0.5274 -4.4998 18 1 8.7061 -1.4328 -3.9545 19 1 6.5855 -1.3344 -5.1265 20 1 8.2678 0.3673 -5.5191 21 6 3.5048 1.2985 0.3189 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.9170 2.4056 -1.5927 26 1 2.6984 2.5050 -1.7369 27 1 2.6999 0.5463 -2.9889 28 1 0.9184 0.4525 -2.8425 29 1 3.9413 -1.2249 -1.9655 30 1 3.6427 -1.5432 -0.2364 31 1 8.2487 1.9777 -3.3100 32 1 3.6462 0.8549 1.3044 33 1 3.9472 2.2944 0.2964 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723714876.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:03 Heat of formation + Delta-G solvation = -40.918813 kcal Electronic energy + Delta-G solvation = -16401.781343 eV Core-core repulsion = 13847.634810 eV Total energy + Delta-G solvation = -2554.146534 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57794 -38.73191 -35.09637 -34.57307 -32.53845 -31.93443 -29.07064 -27.66419 -25.46817 -24.99109 -21.98117 -21.49892 -19.87283 -18.47138 -17.79280 -16.84720 -16.47220 -15.97812 -15.76413 -15.09820 -15.04264 -14.41330 -14.26450 -13.62512 -13.51398 -13.27012 -13.18897 -12.98667 -12.74869 -12.50500 -12.25762 -12.05349 -11.78991 -11.76097 -11.65662 -11.31978 -10.92777 -9.78840 -9.54115 -8.97084 -8.27918 -6.81803 1.39403 1.41099 1.55739 2.23847 2.47872 2.84226 3.00947 3.61781 3.74775 3.82333 3.98807 4.12454 4.29247 4.46621 4.52041 4.58617 4.66712 4.72690 4.79307 4.94492 4.95975 4.96337 5.04220 5.10389 5.20683 5.37449 5.39875 5.76439 5.86976 6.14892 6.18107 6.45664 6.89386 7.47140 8.49587 8.69382 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.043651 B = 0.009045 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.293204 B = 3095.007135 C = 3369.832963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.514 5.514 3 C 0.060 3.940 4 H 0.116 0.884 5 C -0.137 4.137 6 C -0.137 4.137 7 C 0.056 3.944 8 H 0.127 0.873 9 C 0.130 3.870 10 N -0.637 5.637 11 C 0.545 3.455 12 O -0.636 6.636 13 C -0.567 4.567 14 H 0.093 0.907 15 C 0.028 3.972 16 N -0.825 5.825 17 Si 0.994 3.006 18 H -0.263 1.263 19 H -0.245 1.245 20 H -0.275 1.275 21 C 0.130 3.870 22 H 0.033 0.967 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.273 0.727 32 H 0.051 0.949 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.964 -6.035 0.405 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.237 5.237 3 C -0.050 4.050 4 H 0.134 0.866 5 C -0.176 4.176 6 C -0.176 4.176 7 C -0.053 4.053 8 H 0.145 0.855 9 C 0.006 3.994 10 N -0.373 5.373 11 C 0.351 3.649 12 O -0.524 6.524 13 C -0.603 4.603 14 H 0.111 0.889 15 C -0.186 4.186 16 N -0.455 5.455 17 Si 0.813 3.187 18 H -0.188 1.188 19 H -0.168 1.168 20 H -0.200 1.200 21 C 0.006 3.994 22 H 0.051 0.949 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.398 -5.673 1.082 14.590 hybrid contribution 0.535 0.590 -1.116 1.371 sum -12.864 -5.083 -0.034 13.832 Atomic orbital electron populations 1.22531 0.86438 1.03000 1.01303 1.65358 1.09592 1.14322 1.34400 1.23351 0.94496 0.90789 0.96371 0.86643 1.22946 1.00679 0.97883 0.96088 1.22981 1.01505 0.94583 0.98548 1.23408 0.95293 0.98285 0.88323 0.85495 1.21697 0.91685 0.85327 1.00671 1.47987 1.26302 1.21281 1.41719 1.18608 0.79082 0.84924 0.82324 1.90535 1.62839 1.30206 1.68836 1.21468 1.15111 1.06776 1.16938 0.88927 1.26988 0.95835 0.95688 1.00130 1.70202 1.18708 1.19451 1.37108 0.85080 0.79037 0.78101 0.76497 1.18758 1.16818 1.19983 1.21404 0.92047 0.94762 0.91153 0.94868 0.89987 0.90599 0.90052 0.94940 0.93435 0.89916 0.89782 0.92666 0.91750 0.93119 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.44 127.69 1.21 1.51 16 2 N -0.51 -14.23 5.26 -853.73 -4.49 -18.72 16 3 C 0.06 1.88 3.62 45.39 0.16 2.04 16 4 H 0.12 3.04 8.10 -2.39 -0.02 3.02 16 5 C -0.14 -4.51 5.69 32.10 0.18 -4.33 16 6 C -0.14 -4.29 5.54 32.10 0.18 -4.11 16 7 C 0.06 1.63 3.67 45.24 0.17 1.80 16 8 H 0.13 2.86 8.09 -2.39 -0.02 2.84 16 9 C 0.13 4.86 5.77 86.41 0.50 5.36 16 10 N -0.64 -29.99 2.26 -820.93 -1.85 -31.85 16 11 C 0.54 32.33 7.62 86.36 0.66 32.99 16 12 O -0.64 -43.90 14.53 -4.32 -0.06 -43.96 16 13 C -0.57 -32.22 8.84 24.83 0.22 -32.00 16 14 H 0.09 4.69 5.73 -2.91 -0.02 4.68 16 15 C 0.03 1.59 5.50 85.30 0.47 2.06 16 16 N -0.82 -51.35 11.84 21.83 0.26 -51.09 16 17 Si 0.99 41.16 29.56 68.60 2.03 43.19 16 18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 19 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 C 0.13 5.46 5.87 86.56 0.51 5.97 16 22 H 0.03 0.63 7.01 -2.39 -0.02 0.61 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.03 1.35 7.84 -2.38 -0.02 1.34 16 27 H 0.05 1.83 7.83 -2.39 -0.02 1.81 16 28 H 0.08 2.08 8.05 -2.39 -0.02 2.06 16 29 H 0.08 3.26 5.43 -2.39 -0.01 3.25 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.27 15.40 8.29 -92.71 -0.77 14.64 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 2.35 7.14 -2.39 -0.02 2.33 16 Total: -1.00 -75.66 260.56 1.23 -74.44 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 1.10 Total: 16.72 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 4.25 Total: 11.27 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -6.08 Total: -101.66 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.06 Total: -43.96 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -75.66 1.23 -74.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723714876.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.518 kcal (2) G-P(sol) polarization free energy of solvation -75.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds