Wall clock time and date at job start Mon Mar 30 2020 03:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47451 * 2 1 4 4 C 1.37186 * 119.99726 * 89.06691 * 3 2 1 5 5 H 1.08001 * 119.99830 * 207.77741 * 4 3 2 6 6 C 1.38879 * 120.00227 * 27.78140 * 4 3 2 7 7 N 1.31470 * 120.00126 * 41.01380 * 6 4 3 8 8 Si 1.86798 * 120.00022 * 221.01617 * 6 4 3 9 9 H 1.48502 * 109.47216 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47459 * 299.99814 * 8 6 4 11 11 H 1.48500 * 109.47230 * 59.99881 * 8 6 4 12 12 C 1.34771 * 120.00058 * 269.06883 * 3 2 1 13 13 O 1.21582 * 120.00370 * 193.08429 * 12 3 2 14 14 N 1.34777 * 120.00214 * 13.08599 * 12 3 2 15 15 C 1.48147 * 127.84110 * 191.64828 * 14 12 3 16 16 C 1.54392 * 104.61669 * 140.41485 * 15 14 12 17 17 H 1.09006 * 117.60989 * 244.78256 * 16 15 14 18 18 C 1.52992 * 118.12538 * 89.21261 * 16 15 14 19 19 C 1.54281 * 104.96337 * 23.86557 * 16 15 14 20 20 H 1.08990 * 121.81903 * 222.17838 * 19 16 15 21 21 C 1.48148 * 127.83624 * 11.32798 * 14 12 3 22 22 H 1.09002 * 109.46834 * 299.99732 * 1 2 3 23 23 H 1.09000 * 109.47101 * 59.99683 * 1 2 3 24 24 H 1.08999 * 109.47603 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46834 * 240.00267 * 2 1 3 26 26 H 1.09000 * 109.47101 * 120.00317 * 2 1 3 27 27 H 0.97005 * 120.00171 * 3.38304 * 7 6 4 28 28 H 1.08995 * 110.40516 * 259.19946 * 15 14 12 29 29 H 1.09007 * 110.40525 * 21.51365 * 15 14 12 30 30 H 1.08999 * 117.44213 * 16.10508 * 18 16 15 31 31 H 1.09000 * 117.44543 * 160.80592 * 18 16 15 32 32 H 1.08998 * 110.40876 * 338.36697 * 21 14 12 33 33 H 1.08995 * 110.40986 * 100.80410 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2288 2.0343 1.1879 5 1 2.1460 3.1101 1.2347 6 6 2.5484 1.3121 2.3303 7 7 3.3880 0.3031 2.2568 8 14 1.7852 1.7743 3.9715 9 1 2.2847 0.8557 5.0259 10 1 2.1564 3.1706 4.3143 11 1 0.3072 1.6636 3.8788 12 6 2.2609 2.0102 -1.1670 13 8 2.8833 3.0546 -1.1768 14 7 1.8136 1.4815 -2.3232 15 6 2.1715 1.8815 -3.7040 16 6 2.2856 0.5505 -4.4781 17 1 3.2657 0.2752 -4.8678 18 6 1.0256 -0.0077 -5.1424 19 6 1.4159 -0.4471 -3.6853 20 1 1.7416 -1.4700 -3.4969 21 6 0.8573 0.3642 -2.5016 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8220 0.0936 1.4149 28 1 1.3880 2.5054 -4.1341 29 1 3.1246 2.4106 -3.7115 30 1 0.1831 0.6716 -5.2722 31 1 1.1596 -0.7454 -5.9336 32 1 0.8209 -0.2521 -1.6033 33 1 -0.1346 0.7473 -2.7411 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885625636.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:08 Heat of formation + Delta-G solvation = 68.875941 kcal Electronic energy + Delta-G solvation = -16285.452378 eV Core-core repulsion = 13736.066902 eV Total energy + Delta-G solvation = -2549.385476 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13913 -37.79302 -35.44587 -33.19017 -31.67130 -30.07189 -27.77363 -25.78262 -23.95145 -22.27057 -21.27927 -20.02468 -19.27463 -17.48168 -16.44975 -15.84441 -14.97397 -14.83475 -13.97992 -13.77803 -13.68177 -13.39956 -13.00346 -12.42094 -11.91317 -11.79043 -11.37976 -11.35875 -11.14748 -10.82840 -10.57074 -10.32239 -10.16447 -9.98261 -9.88199 -9.63271 -8.83010 -8.62952 -8.01296 -7.64503 -6.63610 -3.70271 3.35798 3.39822 3.55268 3.58523 3.64888 4.18980 4.42398 4.69945 4.77156 4.92236 5.04333 5.21177 5.31031 5.31735 5.61979 5.68767 5.78067 5.91197 5.98176 6.03481 6.08866 6.11949 6.24474 6.29388 6.36633 6.68548 6.81833 6.92942 7.69095 8.19407 8.37016 8.93932 9.12164 9.57106 10.12795 10.64694 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046441 B = 0.008721 C = 0.008041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.770794 B = 3209.910041 C = 3481.113054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.082 3.918 3 N -0.466 5.466 4 C -0.404 4.404 5 H 0.084 0.916 6 C 0.013 3.987 7 N -0.859 5.859 8 Si 1.061 2.939 9 H -0.282 1.282 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.682 3.318 13 O -0.609 6.609 14 N -0.647 5.647 15 C 0.154 3.846 16 C -0.174 4.174 17 H 0.113 0.887 18 C -0.147 4.147 19 C -0.180 4.180 20 H 0.117 0.883 21 C 0.077 3.923 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.275 0.725 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.138 0.862 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 -5.164 -9.957 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.042 4.042 3 N -0.190 5.190 4 C -0.530 4.530 5 H 0.101 0.899 6 C -0.195 4.195 7 N -0.492 5.492 8 Si 0.888 3.112 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.212 1.212 12 C 0.388 3.612 13 O -0.490 6.490 14 N -0.388 5.388 15 C 0.030 3.970 16 C -0.194 4.194 17 H 0.131 0.869 18 C -0.184 4.184 19 C -0.200 4.200 20 H 0.135 0.865 21 C -0.045 4.045 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.155 0.845 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.229 -4.947 -8.150 11.388 hybrid contribution 0.157 0.320 -1.832 1.866 sum -6.072 -4.627 -9.981 12.566 Atomic orbital electron populations 1.22607 0.97361 1.00952 1.03077 1.21886 0.93367 0.86360 1.02608 1.42752 1.61176 1.11796 1.03284 1.19964 1.54175 0.94373 0.84505 0.89860 1.26153 0.94392 0.96377 1.02616 1.70803 1.17909 1.31940 1.28563 0.83624 0.76485 0.76324 0.74802 1.20731 1.20994 1.21193 1.15731 0.81498 0.84945 0.78981 1.90739 1.47852 1.25474 1.84985 1.48253 1.48669 1.37591 1.04293 1.21367 1.00989 0.93505 0.81145 1.23735 0.96257 0.96298 1.03062 0.86925 1.23618 0.98181 1.02505 0.94081 1.24393 1.05425 0.98973 0.91187 0.86504 1.23293 0.91812 0.89835 0.99561 0.91652 0.91983 0.92696 0.91636 0.89081 0.91497 0.92349 0.90288 0.88814 0.88348 0.84482 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 8.87 37.16 0.33 -2.94 16 2 C 0.08 1.78 4.96 -4.04 -0.02 1.76 16 3 N -0.47 -12.24 2.46 -122.80 -0.30 -12.55 16 4 C -0.40 -11.69 8.80 -14.92 -0.13 -11.82 16 5 H 0.08 2.60 7.87 -52.49 -0.41 2.19 16 6 C 0.01 0.36 4.49 -17.47 -0.08 0.28 16 7 N -0.86 -24.38 12.24 55.49 0.68 -23.70 16 8 Si 1.06 24.08 30.06 -169.99 -5.11 18.97 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.68 18.04 8.20 -86.92 -0.71 17.32 16 13 O -0.61 -18.60 16.61 5.29 0.09 -18.51 16 14 N -0.65 -13.43 3.24 -175.26 -0.57 -14.00 16 15 C 0.15 2.66 6.82 -2.41 -0.02 2.64 16 16 C -0.17 -2.37 6.99 -89.22 -0.62 -3.00 16 17 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 18 C -0.15 -1.60 10.30 -24.50 -0.25 -1.86 16 19 C -0.18 -2.42 7.28 -87.20 -0.64 -3.06 16 20 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 21 C 0.08 1.26 4.13 -2.62 -0.01 1.25 16 22 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 23 H 0.06 1.06 5.04 -51.93 -0.26 0.80 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 1.30 5.46 -51.93 -0.28 1.01 16 26 H 0.09 2.17 5.56 -51.93 -0.29 1.88 16 27 H 0.27 7.99 7.95 -40.82 -0.32 7.67 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.46 8.00 -51.93 -0.42 1.05 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.14 2.27 1.91 -55.53 -0.11 2.17 16 33 H 0.06 0.87 7.61 -51.93 -0.40 0.48 16 LS Contribution 263.17 15.07 3.97 3.97 Total: -1.00 -33.21 263.17 -7.64 -40.85 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.24 Total: 4.38 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.15 Total: 0.59 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.19 Total: -50.24 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.09 Total: -18.51 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.11 Total: 18.97 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.21 -7.64 -40.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885625636.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.729 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds