Wall clock time and date at job start Mon Mar 30 2020 03:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47451 * 2 1 4 4 C 1.37186 * 119.99726 * 89.06691 * 3 2 1 5 5 H 1.08001 * 119.99830 * 207.77741 * 4 3 2 6 6 C 1.38879 * 120.00227 * 27.78140 * 4 3 2 7 7 N 1.31470 * 120.00126 * 41.01380 * 6 4 3 8 8 Si 1.86798 * 120.00022 * 221.01617 * 6 4 3 9 9 H 1.48502 * 109.47216 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.47459 * 299.99814 * 8 6 4 11 11 H 1.48500 * 109.47230 * 59.99881 * 8 6 4 12 12 C 1.34771 * 120.00058 * 269.06883 * 3 2 1 13 13 O 1.21582 * 120.00370 * 193.08429 * 12 3 2 14 14 N 1.34777 * 120.00214 * 13.08599 * 12 3 2 15 15 C 1.48147 * 127.84110 * 191.64828 * 14 12 3 16 16 C 1.54392 * 104.61669 * 140.41485 * 15 14 12 17 17 H 1.09006 * 117.60989 * 244.78256 * 16 15 14 18 18 C 1.52992 * 118.12538 * 89.21261 * 16 15 14 19 19 C 1.54281 * 104.96337 * 23.86557 * 16 15 14 20 20 H 1.08990 * 121.81903 * 222.17838 * 19 16 15 21 21 C 1.48148 * 127.83624 * 11.32798 * 14 12 3 22 22 H 1.09002 * 109.46834 * 299.99732 * 1 2 3 23 23 H 1.09000 * 109.47101 * 59.99683 * 1 2 3 24 24 H 1.08999 * 109.47603 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46834 * 240.00267 * 2 1 3 26 26 H 1.09000 * 109.47101 * 120.00317 * 2 1 3 27 27 H 0.97005 * 120.00171 * 3.38304 * 7 6 4 28 28 H 1.08995 * 110.40516 * 259.19946 * 15 14 12 29 29 H 1.09007 * 110.40525 * 21.51365 * 15 14 12 30 30 H 1.08999 * 117.44213 * 16.10508 * 18 16 15 31 31 H 1.09000 * 117.44543 * 160.80592 * 18 16 15 32 32 H 1.08998 * 110.40876 * 338.36697 * 21 14 12 33 33 H 1.08995 * 110.40986 * 100.80410 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2288 2.0343 1.1879 5 1 2.1460 3.1101 1.2347 6 6 2.5484 1.3121 2.3303 7 7 3.3880 0.3031 2.2568 8 14 1.7852 1.7743 3.9715 9 1 2.2847 0.8557 5.0259 10 1 2.1564 3.1706 4.3143 11 1 0.3072 1.6636 3.8788 12 6 2.2609 2.0102 -1.1670 13 8 2.8833 3.0546 -1.1768 14 7 1.8136 1.4815 -2.3232 15 6 2.1715 1.8815 -3.7040 16 6 2.2856 0.5505 -4.4781 17 1 3.2657 0.2752 -4.8678 18 6 1.0256 -0.0077 -5.1424 19 6 1.4159 -0.4471 -3.6853 20 1 1.7416 -1.4700 -3.4969 21 6 0.8573 0.3642 -2.5016 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8220 0.0936 1.4149 28 1 1.3880 2.5054 -4.1341 29 1 3.1246 2.4106 -3.7115 30 1 0.1831 0.6716 -5.2722 31 1 1.1596 -0.7454 -5.9336 32 1 0.8209 -0.2521 -1.6033 33 1 -0.1346 0.7473 -2.7411 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885625636.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:08 Heat of formation + Delta-G solvation = 47.120237 kcal Electronic energy + Delta-G solvation = -16286.395776 eV Core-core repulsion = 13736.066902 eV Total energy + Delta-G solvation = -2550.328874 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.72574 -39.38253 -37.44644 -34.88511 -33.43733 -31.92043 -29.12621 -27.50591 -25.71214 -23.98438 -22.42943 -21.39509 -20.86322 -19.47524 -18.19952 -17.36273 -16.70451 -16.48404 -15.62330 -15.45427 -15.29104 -15.08145 -14.62439 -13.94841 -13.49940 -13.16095 -13.07397 -12.82674 -12.70894 -12.49817 -12.10897 -11.91617 -11.79855 -11.75089 -11.16903 -10.92633 -10.73859 -10.57199 -9.90584 -9.51076 -8.85754 -5.92262 1.52225 1.55126 1.82271 1.95017 2.23578 2.53005 2.56988 2.92527 3.34138 3.60416 3.66774 3.90267 4.00412 4.14626 4.24253 4.37755 4.48635 4.54081 4.61623 4.75073 4.87763 4.93213 5.03131 5.04887 5.15965 5.26648 5.29884 5.39896 5.74428 5.91271 6.31273 6.90470 7.02601 7.53731 8.07046 8.40841 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046441 B = 0.008721 C = 0.008041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.770794 B = 3209.910041 C = 3481.113054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.083 3.917 3 N -0.479 5.479 4 C -0.433 4.433 5 H 0.046 0.954 6 C -0.015 4.015 7 N -0.866 5.866 8 Si 1.113 2.887 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.263 1.263 12 C 0.669 3.331 13 O -0.670 6.670 14 N -0.651 5.651 15 C 0.144 3.856 16 C -0.184 4.184 17 H 0.123 0.877 18 C -0.106 4.106 19 C -0.186 4.186 20 H 0.134 0.866 21 C 0.071 3.929 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.260 0.740 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.528 -7.225 -11.136 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.040 4.040 3 N -0.203 5.203 4 C -0.560 4.560 5 H 0.064 0.936 6 C -0.220 4.220 7 N -0.499 5.499 8 Si 0.933 3.067 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.188 1.188 12 C 0.374 3.626 13 O -0.556 6.556 14 N -0.391 5.391 15 C 0.021 3.979 16 C -0.203 4.203 17 H 0.141 0.859 18 C -0.143 4.143 19 C -0.205 4.205 20 H 0.152 0.848 21 C -0.049 4.049 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.116 0.884 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.218 -7.069 -9.391 14.342 hybrid contribution 0.800 0.965 -1.563 2.004 sum -7.418 -6.104 -10.954 14.570 Atomic orbital electron populations 1.22514 0.94150 1.03547 1.02590 1.22084 0.95936 0.83614 1.02367 1.42933 1.61511 1.13243 1.02580 1.19866 1.56252 0.93289 0.86582 0.93578 1.27601 0.93398 0.95442 1.05522 1.70935 1.18660 1.32641 1.27631 0.82987 0.76780 0.76278 0.70653 1.19820 1.20519 1.18832 1.16089 0.81355 0.84616 0.80508 1.90664 1.50482 1.28090 1.86321 1.48260 1.48695 1.38348 1.03778 1.21598 1.00149 0.96023 0.80101 1.23653 0.98430 0.93894 1.04321 0.85930 1.23786 0.96070 1.01783 0.92678 1.24412 1.05697 0.98985 0.91425 0.84790 1.23441 0.91595 0.88795 1.01080 0.93637 0.90944 0.88445 0.89735 0.91387 0.93113 0.90975 0.92916 0.87879 0.85031 0.84856 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.81 8.87 71.98 0.64 -5.17 16 2 C 0.08 3.58 4.96 86.38 0.43 4.01 16 3 N -0.48 -25.98 2.46 -660.70 -1.63 -27.61 16 4 C -0.43 -26.16 8.80 84.01 0.74 -25.42 16 5 H 0.05 3.07 7.87 -2.91 -0.02 3.05 16 6 C -0.01 -0.83 4.49 84.90 0.38 -0.44 16 7 N -0.87 -49.96 12.24 21.65 0.26 -49.70 16 8 Si 1.11 48.66 30.06 68.60 2.06 50.73 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 12 C 0.67 36.81 8.20 179.06 1.47 38.28 16 13 O -0.67 -43.43 16.61 -3.97 -0.07 -43.50 16 14 N -0.65 -27.12 3.24 -826.67 -2.68 -29.80 16 15 C 0.14 4.94 6.82 86.54 0.59 5.53 16 16 C -0.18 -4.50 6.99 -9.89 -0.07 -4.57 16 17 H 0.12 2.78 8.14 -2.38 -0.02 2.76 16 18 C -0.11 -1.78 10.30 32.04 0.33 -1.45 16 19 C -0.19 -4.28 7.28 -8.58 -0.06 -4.35 16 20 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 21 C 0.07 2.16 4.13 86.40 0.36 2.52 16 22 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.07 2.31 5.04 -2.39 -0.01 2.30 16 24 H 0.10 2.48 8.14 -2.39 -0.02 2.47 16 25 H 0.08 3.27 5.46 -2.39 -0.01 3.26 16 26 H 0.07 3.25 5.56 -2.39 -0.01 3.24 16 27 H 0.26 15.58 7.95 -92.70 -0.74 14.84 16 28 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 2.04 8.00 -2.38 -0.02 2.02 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.13 4.10 1.91 -5.77 -0.01 4.09 16 33 H 0.07 2.00 7.61 -2.39 -0.02 1.98 16 Total: -1.00 -77.15 263.17 3.90 -73.25 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 1.14 Total: 17.69 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 4.80 Total: 8.93 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -4.04 Total: -107.11 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.07 Total: -43.50 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.06 Total: 50.73 kcal Total: -77.15 3.90 -73.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885625636.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.373 kcal (2) G-P(sol) polarization free energy of solvation -77.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds