Wall clock time and date at job start Mon Mar 30 2020 02:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 N 1.46496 * 109.47484 * 295.00296 * 4 2 1 6 6 C 1.34946 * 126.04059 * 125.00060 * 5 4 2 7 7 C 1.35314 * 107.74555 * 179.97438 * 6 5 4 8 8 C 1.50702 * 126.04014 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.46708 * 25.00606 * 8 7 6 10 10 O 1.42903 * 109.46992 * 144.99945 * 8 7 6 11 11 C 1.50698 * 109.47470 * 265.00282 * 8 7 6 12 12 H 1.08001 * 119.99657 * 359.97438 * 11 8 7 13 13 C 1.37882 * 119.99827 * 179.97438 * 11 8 7 14 14 N 1.31506 * 120.00193 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99747 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47348 * 89.99816 * 15 13 11 17 17 H 1.48499 * 109.47185 * 210.00123 * 15 13 11 18 18 H 1.48504 * 109.47307 * 330.00091 * 15 13 11 19 19 C 1.39872 * 107.92484 * 359.97438 * 7 6 5 20 20 N 1.30847 * 108.19628 * 359.74128 * 19 7 6 21 21 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 23 23 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 29 29 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 30 30 H 1.07995 * 126.12567 * 359.97438 * 6 5 4 31 31 H 0.96699 * 113.99842 * 60.00891 * 10 8 7 32 32 H 0.97003 * 120.00372 * 180.02562 * 14 13 11 33 33 H 1.07997 * 125.90037 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6523 -2.1327 -1.1907 6 6 0.9583 -2.8052 -2.1326 7 6 0.8073 -4.0793 -1.7026 8 6 0.0933 -5.1844 -2.4375 9 1 0.1007 -4.9734 -3.5068 10 8 0.7573 -6.4259 -2.1924 11 6 -1.3308 -5.2721 -1.9525 12 1 -1.6835 -4.5955 -1.1881 13 6 -2.1833 -6.2161 -2.4845 14 7 -1.7537 -7.0403 -3.4149 15 14 -3.9488 -6.3243 -1.8839 16 1 -4.8087 -5.4419 -2.7128 17 1 -4.4247 -7.7265 -1.9959 18 1 -4.0165 -5.8905 -0.4652 19 6 1.4308 -4.1894 -0.4554 20 7 1.9428 -3.0246 -0.1503 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6053 -0.2617 -2.1370 29 1 3.1263 -0.6443 -1.2952 30 1 0.5896 -2.3993 -3.0629 31 1 0.7886 -6.6776 -1.2593 32 1 -2.3536 -7.7042 -3.7895 33 1 1.4840 -5.0826 0.1494 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535766681.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:22 Heat of formation + Delta-G solvation = 12.578184 kcal Electronic energy + Delta-G solvation = -15334.684274 eV Core-core repulsion = 12782.857545 eV Total energy + Delta-G solvation = -2551.826730 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.52426 -36.50338 -35.27043 -32.07628 -31.39167 -29.85260 -27.23026 -26.82549 -25.44119 -22.48876 -21.05670 -19.96666 -18.97177 -16.89249 -16.59009 -15.37503 -14.68270 -14.52869 -14.16099 -13.98901 -13.26376 -13.04956 -12.80562 -12.67450 -12.36087 -12.04149 -11.67083 -11.36304 -11.12860 -11.05677 -10.90383 -10.84063 -10.81944 -10.18462 -10.06052 -9.09701 -8.72175 -8.57383 -8.25774 -7.42470 -5.94562 -4.12369 2.56242 3.07139 3.30722 3.37836 3.40939 3.68718 4.45682 4.57318 4.78486 4.96181 5.18475 5.30863 5.36659 5.50984 5.55488 5.59379 5.71685 5.77720 5.85553 5.97391 6.20089 6.29937 6.39343 6.43462 6.56869 6.87564 7.37915 7.70258 7.80585 7.91288 8.25753 8.40639 8.91132 9.43993 9.64319 11.08338 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035728 B = 0.006927 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.505587 B = 4041.085287 C = 4523.047417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.144 4.144 4 C 0.144 3.856 5 N -0.382 5.382 6 C 0.033 3.967 7 C -0.212 4.212 8 C 0.293 3.707 9 H 0.060 0.940 10 O -0.561 6.561 11 C -0.557 4.557 12 H 0.055 0.945 13 C 0.078 3.922 14 N -0.862 5.862 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.051 3.949 20 N -0.312 5.312 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.345 0.655 32 H 0.260 0.740 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 13.124 4.367 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.202 4.202 4 C 0.022 3.978 5 N -0.167 5.167 6 C -0.111 4.111 7 C -0.223 4.223 8 C 0.234 3.766 9 H 0.078 0.922 10 O -0.363 6.363 11 C -0.595 4.595 12 H 0.073 0.927 13 C -0.128 4.128 14 N -0.498 5.498 15 Si 0.715 3.285 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.135 4.135 20 N -0.134 5.134 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.181 0.819 31 H 0.189 0.811 32 H 0.070 0.930 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.210 13.801 4.411 15.763 hybrid contribution -1.686 -0.459 0.245 1.765 sum 4.524 13.341 4.656 14.837 Atomic orbital electron populations 1.21805 0.94561 1.02612 1.01368 1.21414 0.96780 0.95892 0.98698 1.21787 1.00970 0.95369 1.02094 1.21613 1.00180 0.76807 0.99158 1.48374 1.44321 1.08574 1.15393 1.22155 0.99637 0.93356 0.95934 1.21670 1.06064 0.97144 0.97470 1.17776 0.87893 0.76923 0.93990 0.92243 1.86573 1.80173 1.41417 1.28169 1.21622 0.96012 1.18416 1.23465 0.92693 1.25049 0.98120 0.95204 0.94386 1.70071 1.35106 1.18688 1.25983 0.86688 0.85211 0.77235 0.79328 1.20658 1.21150 1.19881 1.23576 0.97674 0.95791 0.96426 1.77102 1.25117 1.00294 1.10881 0.92050 0.92766 0.92845 0.89813 0.92240 0.92521 0.92534 0.89345 0.90729 0.81916 0.81150 0.93025 0.80879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.08 37.16 0.34 -1.48 16 2 C -0.11 -1.26 3.01 -90.62 -0.27 -1.53 16 3 C -0.14 -1.24 9.19 37.16 0.34 -0.89 16 4 C 0.14 1.81 5.90 -4.05 -0.02 1.78 16 5 N -0.38 -6.55 3.13 -61.37 -0.19 -6.74 16 6 C 0.03 0.62 11.36 -17.22 -0.20 0.42 16 7 C -0.21 -4.63 5.09 -105.05 -0.53 -5.17 16 8 C 0.29 7.50 3.28 -29.03 -0.10 7.41 16 9 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 10 O -0.56 -14.58 12.62 -35.23 -0.44 -15.03 16 11 C -0.56 -15.32 8.75 -34.44 -0.30 -15.62 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 14 N -0.86 -25.40 12.84 55.43 0.71 -24.69 16 15 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.05 1.03 11.40 -17.36 -0.20 0.83 16 20 N -0.31 -6.00 12.35 30.63 0.38 -5.62 16 21 H 0.06 0.97 7.75 -51.93 -0.40 0.56 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 29 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.16 2.69 8.06 -52.49 -0.42 2.27 16 31 H 0.34 7.85 8.24 45.56 0.38 8.23 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.17 3.11 7.64 -52.49 -0.40 2.71 16 LS Contribution 285.11 15.07 4.30 4.30 Total: -1.00 -31.83 285.11 -5.50 -37.33 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -4.19 Total: 6.38 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.04 Total: -12.17 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.90 Total: -37.05 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.44 Total: -15.03 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.83 -5.50 -37.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535766681.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.904 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds