Wall clock time and date at job start Mon Mar 30 2020 02:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 N 1.46496 * 109.47484 * 295.00296 * 4 2 1 6 6 C 1.34946 * 126.04059 * 125.00060 * 5 4 2 7 7 C 1.35314 * 107.74555 * 179.97438 * 6 5 4 8 8 C 1.50702 * 126.04014 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.46708 * 25.00606 * 8 7 6 10 10 O 1.42903 * 109.46992 * 144.99945 * 8 7 6 11 11 C 1.50698 * 109.47470 * 265.00282 * 8 7 6 12 12 H 1.08001 * 119.99657 * 359.97438 * 11 8 7 13 13 C 1.37882 * 119.99827 * 179.97438 * 11 8 7 14 14 N 1.31506 * 120.00193 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99747 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47348 * 89.99816 * 15 13 11 17 17 H 1.48499 * 109.47185 * 210.00123 * 15 13 11 18 18 H 1.48504 * 109.47307 * 330.00091 * 15 13 11 19 19 C 1.39872 * 107.92484 * 359.97438 * 7 6 5 20 20 N 1.30847 * 108.19628 * 359.74128 * 19 7 6 21 21 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 23 23 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 29 29 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 30 30 H 1.07995 * 126.12567 * 359.97438 * 6 5 4 31 31 H 0.96699 * 113.99842 * 60.00891 * 10 8 7 32 32 H 0.97003 * 120.00372 * 180.02562 * 14 13 11 33 33 H 1.07997 * 125.90037 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6523 -2.1327 -1.1907 6 6 0.9583 -2.8052 -2.1326 7 6 0.8073 -4.0793 -1.7026 8 6 0.0933 -5.1844 -2.4375 9 1 0.1007 -4.9734 -3.5068 10 8 0.7573 -6.4259 -2.1924 11 6 -1.3308 -5.2721 -1.9525 12 1 -1.6835 -4.5955 -1.1881 13 6 -2.1833 -6.2161 -2.4845 14 7 -1.7537 -7.0403 -3.4149 15 14 -3.9488 -6.3243 -1.8839 16 1 -4.8087 -5.4419 -2.7128 17 1 -4.4247 -7.7265 -1.9959 18 1 -4.0165 -5.8905 -0.4652 19 6 1.4308 -4.1894 -0.4554 20 7 1.9428 -3.0246 -0.1503 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6053 -0.2617 -2.1370 29 1 3.1263 -0.6443 -1.2952 30 1 0.5896 -2.3993 -3.0629 31 1 0.7886 -6.6776 -1.2593 32 1 -2.3536 -7.7042 -3.7895 33 1 1.4840 -5.0826 0.1494 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535766681.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:22 Heat of formation + Delta-G solvation = -9.297423 kcal Electronic energy + Delta-G solvation = -15335.632872 eV Core-core repulsion = 12782.857545 eV Total energy + Delta-G solvation = -2552.775327 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.00850 -37.80862 -36.94974 -34.21233 -32.71326 -31.53500 -28.55320 -28.07568 -26.90424 -24.39603 -22.27367 -21.37853 -20.33570 -18.98078 -18.04846 -16.63304 -16.53437 -16.11838 -15.48240 -15.37872 -14.96157 -14.64301 -14.33269 -13.80094 -13.39835 -13.28750 -13.15013 -12.97576 -12.82768 -12.74924 -12.21806 -12.10474 -11.95565 -11.88393 -11.53800 -11.03825 -10.69608 -10.27345 -10.13574 -9.06225 -8.05966 -6.32446 1.07511 1.41744 1.42913 1.53544 1.78128 2.04770 2.45700 3.16729 3.55784 3.88187 4.00273 4.10563 4.19225 4.40796 4.45434 4.56949 4.65741 4.76232 4.80066 4.86800 4.95534 5.01204 5.18569 5.19224 5.33969 5.40766 5.68705 5.78320 5.91107 6.15778 6.32239 6.77350 6.88460 7.38450 7.60350 8.95729 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035728 B = 0.006927 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.505587 B = 4041.085287 C = 4523.047417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.137 4.137 4 C 0.131 3.869 5 N -0.369 5.369 6 C 0.043 3.957 7 C -0.249 4.249 8 C 0.298 3.702 9 H 0.028 0.972 10 O -0.578 6.578 11 C -0.565 4.565 12 H 0.049 0.951 13 C 0.028 3.972 14 N -0.900 5.900 15 Si 0.956 3.044 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.270 1.270 19 C 0.041 3.959 20 N -0.319 5.319 21 H 0.021 0.979 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.187 0.813 31 H 0.357 0.643 32 H 0.262 0.738 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.394 15.198 4.808 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.194 4.194 4 C 0.011 3.989 5 N -0.152 5.152 6 C -0.102 4.102 7 C -0.260 4.260 8 C 0.240 3.760 9 H 0.046 0.954 10 O -0.381 6.381 11 C -0.603 4.603 12 H 0.067 0.933 13 C -0.174 4.174 14 N -0.538 5.538 15 Si 0.781 3.219 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.195 1.195 19 C -0.144 4.144 20 N -0.142 5.142 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.110 0.890 30 H 0.204 0.796 31 H 0.202 0.798 32 H 0.071 0.929 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.132 15.906 4.879 17.731 hybrid contribution -1.591 -1.008 0.106 1.886 sum 4.541 14.899 4.984 16.353 Atomic orbital electron populations 1.21788 0.95302 1.00354 1.02666 1.21358 0.96021 0.97650 0.97174 1.21734 1.01590 0.92939 1.03183 1.22141 1.01606 0.74226 1.00948 1.48717 1.42605 1.09890 1.14009 1.22436 0.98473 0.92691 0.96623 1.21322 1.08532 0.97448 0.98713 1.17453 0.87836 0.78029 0.92695 0.95373 1.86495 1.80173 1.42113 1.29366 1.21871 0.97259 1.18128 1.23049 0.93321 1.25837 1.02296 0.94807 0.94427 1.70195 1.36718 1.19517 1.27343 0.85623 0.80102 0.77346 0.78865 1.19829 1.20741 1.19472 1.23729 0.97818 0.96676 0.96147 1.77057 1.25219 1.00232 1.11719 0.95925 0.91759 0.91367 0.91983 0.91613 0.91513 0.91025 0.86571 0.89005 0.79636 0.79828 0.92939 0.79822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.08 71.98 0.65 -2.66 16 2 C -0.10 -2.13 3.01 -10.79 -0.03 -2.16 16 3 C -0.14 -1.86 9.19 71.98 0.66 -1.19 16 4 C 0.13 2.89 5.90 86.38 0.51 3.40 16 5 N -0.37 -12.07 3.13 -348.07 -1.09 -13.16 16 6 C 0.04 1.61 11.36 83.54 0.95 2.56 16 7 C -0.25 -10.94 5.09 -20.14 -0.10 -11.04 16 8 C 0.30 15.68 3.28 29.10 0.10 15.77 16 9 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 10 O -0.58 -30.79 12.62 -148.98 -1.88 -32.67 16 11 C -0.57 -31.52 8.75 25.60 0.22 -31.29 16 12 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 13 C 0.03 1.60 5.40 84.66 0.46 2.05 16 14 N -0.90 -53.83 12.84 21.45 0.28 -53.56 16 15 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 C 0.04 1.65 11.40 85.24 0.97 2.63 16 20 N -0.32 -12.06 12.35 -57.02 -0.70 -12.76 16 21 H 0.02 0.68 7.75 -2.39 -0.02 0.66 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.57 8.06 -2.39 -0.02 1.55 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.12 1.97 8.07 -2.39 -0.02 1.95 16 29 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.19 5.84 8.06 -2.91 -0.02 5.82 16 31 H 0.36 16.67 8.24 -74.06 -0.61 16.06 16 32 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.18 6.68 7.64 -2.91 -0.02 6.66 16 Total: -1.00 -68.71 285.11 3.49 -65.21 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.48 Total: 23.03 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 4.39 Total: -21.93 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -1.52 Total: -79.48 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.88 Total: -32.67 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -68.71 3.49 -65.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535766681.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.918 kcal (2) G-P(sol) polarization free energy of solvation -68.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds