Wall clock time and date at job start Mon Mar 30 2020 02:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 N 1.46496 * 109.47484 * 295.00296 * 4 2 1 6 6 C 1.34946 * 126.04407 * 124.71864 * 5 4 2 7 7 C 1.35308 * 107.74924 * 179.84189 * 6 5 4 8 8 C 1.50698 * 126.04005 * 180.15993 * 7 6 5 9 9 H 1.08997 * 109.47509 * 340.27866 * 8 7 6 10 10 O 1.42905 * 109.47343 * 220.27964 * 8 7 6 11 11 C 1.50698 * 109.47449 * 100.28332 * 8 7 6 12 12 H 1.07999 * 119.99684 * 359.97438 * 11 8 7 13 13 C 1.37881 * 120.00171 * 180.02562 * 11 8 7 14 14 N 1.31509 * 119.99897 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99845 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46564 * 90.00130 * 15 13 11 17 17 H 1.48500 * 109.47144 * 209.99918 * 15 13 11 18 18 H 1.48498 * 109.47497 * 330.00201 * 15 13 11 19 19 C 1.39867 * 107.92274 * 0.41714 * 7 6 5 20 20 N 1.30846 * 108.20091 * 359.74194 * 19 7 6 21 21 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 29 29 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 30 30 H 1.08009 * 126.12123 * 359.97438 * 6 5 4 31 31 H 0.96703 * 113.99883 * 300.00081 * 10 8 7 32 32 H 0.97003 * 120.00215 * 179.97438 * 14 13 11 33 33 H 1.08000 * 125.90290 * 179.71372 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6523 -2.1327 -1.1907 6 6 0.9537 -2.8039 -2.1302 7 6 0.8070 -4.0792 -1.7024 8 6 0.0937 -5.1845 -2.4377 9 1 -0.5783 -4.7529 -3.1793 10 8 -0.6607 -5.9653 -1.5085 11 6 1.1051 -6.0634 -3.1274 12 1 2.1590 -5.8433 -3.0421 13 6 0.6849 -7.1478 -3.8680 14 7 -0.5985 -7.4154 -3.9721 15 14 1.9386 -8.2368 -4.7235 16 1 2.3467 -9.3338 -3.8095 17 1 1.3363 -8.8142 -5.9519 18 1 3.1293 -7.4282 -5.0890 19 6 1.4292 -4.1889 -0.4546 20 7 1.9363 -3.0227 -0.1468 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6053 -0.2617 -2.1370 29 1 3.1263 -0.6443 -1.2952 30 1 0.5806 -2.3966 -3.0583 31 1 -0.1257 -6.3806 -0.8182 32 1 -0.8941 -8.1781 -4.4935 33 1 1.4817 -5.0819 0.1506 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535766682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:23 Heat of formation + Delta-G solvation = 12.604606 kcal Electronic energy + Delta-G solvation = -15278.723991 eV Core-core repulsion = 12726.898407 eV Total energy + Delta-G solvation = -2551.825584 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52713 -36.51803 -35.26883 -32.06913 -31.40185 -29.84562 -27.26671 -26.84768 -25.42738 -22.48746 -21.07140 -19.97696 -18.98132 -16.86512 -16.60338 -15.41193 -14.67486 -14.52720 -14.16357 -13.96569 -13.33479 -13.02201 -12.85142 -12.61758 -12.40124 -12.08739 -11.67947 -11.28851 -11.22296 -11.07132 -10.88055 -10.84948 -10.84425 -10.17016 -10.07782 -9.08135 -8.72296 -8.57421 -8.24254 -7.43941 -5.94379 -4.12080 2.56178 3.06683 3.31386 3.38198 3.41501 3.68481 4.45950 4.56100 4.76515 4.94066 5.17177 5.31319 5.36072 5.48796 5.53985 5.58191 5.70598 5.74844 5.83509 5.94609 6.18116 6.24232 6.41396 6.43146 6.55557 6.86522 7.38025 7.69889 7.80889 7.91544 8.26041 8.40920 8.91428 9.44288 9.64632 11.08630 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.050972 B = 0.006071 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.193507 B = 4611.235663 C = 4803.728424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.144 3.856 5 N -0.382 5.382 6 C 0.032 3.968 7 C -0.212 4.212 8 C 0.293 3.707 9 H 0.060 0.940 10 O -0.561 6.561 11 C -0.558 4.558 12 H 0.055 0.945 13 C 0.078 3.922 14 N -0.862 5.862 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.052 3.948 20 N -0.312 5.312 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.163 0.837 31 H 0.345 0.655 32 H 0.260 0.740 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 13.726 5.277 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.202 4.202 4 C 0.022 3.978 5 N -0.167 5.167 6 C -0.111 4.111 7 C -0.223 4.223 8 C 0.234 3.766 9 H 0.077 0.923 10 O -0.363 6.363 11 C -0.596 4.596 12 H 0.073 0.927 13 C -0.128 4.128 14 N -0.499 5.499 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.134 4.134 20 N -0.134 5.134 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.181 0.819 31 H 0.188 0.812 32 H 0.070 0.930 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.691 14.630 5.642 16.109 hybrid contribution 0.786 -1.266 -0.937 1.760 sum 4.477 13.364 4.706 14.859 Atomic orbital electron populations 1.21799 0.94650 1.02435 1.01373 1.21415 0.96708 0.95927 0.98743 1.21788 1.01037 0.95339 1.02077 1.21616 1.00289 0.76792 0.99091 1.48370 1.44425 1.08677 1.15192 1.22173 0.99867 0.93284 0.95801 1.21659 1.07075 0.96291 0.97310 1.17771 0.89231 0.84146 0.85424 0.92268 1.86575 1.38277 1.68424 1.43068 1.21631 0.93354 1.12086 1.32507 0.92672 1.25050 0.94947 0.97316 0.95439 1.70073 1.13540 1.27510 1.38751 0.86681 0.81691 0.80876 0.79173 1.20537 1.21194 1.19952 1.23583 0.97393 0.95656 0.96742 1.77105 1.25069 1.00434 1.10778 0.92741 0.92861 0.92197 0.89783 0.92238 0.92491 0.92530 0.89350 0.90697 0.81941 0.81155 0.93032 0.80860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.08 37.16 0.34 -1.36 16 2 C -0.11 -1.22 3.00 -90.62 -0.27 -1.49 16 3 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 4 C 0.14 1.80 5.90 -4.05 -0.02 1.78 16 5 N -0.38 -6.55 3.13 -61.37 -0.19 -6.74 16 6 C 0.03 0.61 11.36 -17.23 -0.20 0.41 16 7 C -0.21 -4.63 5.05 -105.06 -0.53 -5.16 16 8 C 0.29 7.51 3.28 -29.04 -0.10 7.41 16 9 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 10 O -0.56 -14.60 12.65 -35.23 -0.45 -15.04 16 11 C -0.56 -15.39 8.75 -34.44 -0.30 -15.69 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 14 N -0.86 -25.44 12.84 55.43 0.71 -24.72 16 15 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.05 1.05 11.44 -17.36 -0.20 0.85 16 20 N -0.31 -6.00 12.34 30.63 0.38 -5.62 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 24 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.16 2.67 8.06 -52.48 -0.42 2.25 16 31 H 0.34 7.87 8.35 45.56 0.38 8.25 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.17 3.13 7.76 -52.49 -0.41 2.72 16 LS Contribution 285.34 15.07 4.30 4.30 Total: -1.00 -31.90 285.34 -5.49 -37.40 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.19 Total: 6.18 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.03 Total: -12.03 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.90 Total: -37.08 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.45 Total: -15.04 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.90 -5.49 -37.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535766682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.000 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds